Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name SALL4BP1
Plot displaying the genomic locations of a retrocopy (in scaffold_m16_p_2) and its respective parental gene (in scaffold_m16_p_6). Each line represents a retrocopy.
Species Molossus molossus
Coordinates scaffold_m16_p_2:137759766-137760067  UCSC
Strand -
Parental Sequence SALL4B_x1
Parental seq. overlap 240 bp
Parental seq. overlap (%) 7.7%
Genomic Region Intergenic
Retrocopy Summary SALL4BP1, located on scaffold_m16_p_2:137759766-137760067, is a retrocopy of the parental gene SALL4B. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SALL4B
Full Name N/A
Also known as NULL
Coordinate scaffold_m16_p_6:7528834-7546069
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens SALL4P7
Chimpanzee Pan troglodytes SALL4P4
Bonobo Pan paniscus SALL4P5
Gorilla Gorilla gorilla SALL4P5
Orangutan Pongo abelii SALL4P5
Gibbon Nomascus leucogenys SALL4P5
Green monkey Chlorocebus sabaeus SALL4P3
Crab-eating macaque Macaca fascicularis SALL4P3
Rhesus Macaca mulatta SALL4P3
Baboon Papio anubis SALL4P2
Golden snub-nosed monkey Rhinopithecus roxellana SALL4P4
Dolphin Tursiops truncatus SALL4P1
Dog Canis familiaris SALL4P1
Panda Ailuropoda melanoleuca SALL4P1
Pale spear-nosed bat Phyllostomus discolor SALL4BP1
Greater mouse-eared bat Myotis myotis SALL4BP4
Kuhl's pipistrelle Pipistrellus kuhlii SALL4P2
Sloth Choloepus didactylus SALL4P2
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Horse Equus caballus Without Homology
Cat Felis catus Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SALL4BP1
CTGTGGTCCTGCAGCAGCAGAACAGCAGAGGAAATGGTTTGGTGGAGAGGGGTTGCTTGACCAACAACTCGTCGTCTTCAGTGATGAAAGACCAGGAGTATCAGAGCCAAAGTCCTGATATCCGGGAGATGACGTCCTTTCAGGCCCTCTCCCTAGCAAATAGCCAAGCAGAAAGCATCAAGTCCAAGTCTCCCAATGCTGGTGGCAAAGCAGAGAACTCAGAGAATAGCCACACTGAGGTGGAAGGTTGTAGCAATCTCCCATCAACATTTGTCCACGCCCAGTCAACCTATGTCAAAGTT
>SALL4B_x1
ATGTCGAGGCGCAAGCAGGCGAAACCCCAACACATCAACTCCGAGGAGGACCAGGGCGAGCAGCAGCCGCAGCAGCCGGCCCCGGAGTTTGCAGATgcggccccagcggcgccggcggcgggggagccggGTACTTCAGTGAACCACCCGGCAGCCGGCGATGACATGAATGAGGACCCGGCCGCAGCCAAGAGGCCTCGTCAGGAGGAGACTCACATCTGTGAGAAATGCTGTGGAGAGTTCTTCAGCGTCTCTGAGTTCTTAGAACATAAGAAAAATTGCACTAAACATCCACCTGTCCTCATCATGAACGACAGCGAGGGGCCGGTGCCTTCCGAAGACTTCTCCGGGGCTGTGCTGAGCCACCAGCCACGCAGTCCCAGCTGTAAGGACAGTCACAGGGAGGATGGCGGCAGCTCAGGGGACATGAAGGAGAAGCCAGGGGCGGAGTCTGTCCTGTTCCTAAAGACAGAAACCGCCCTGCCACCCACACCCCAGGACTTAAGCTATTTACCCAAAGGCAAAGTGGCCAACACTAACGTCACTCTACAAGCACTACGGGGCACCAAGGTGGCGGTCAATCAGCGGAGCGCGGACGCgctgcccgcccccctgcccggtgccaacagcatcccgtgggtcttggagcagatcctgtgtctgcagcagcagcagctgcagcAGATCCAGCTCACCGAGCAGATCCGCGTGCAGGTGAACATGTGGGCTGCCCACGCCCTCCACTCCGGCGTGGCGGGAGCCGACACCCTGAAGACCTTAGGCAGCCACATGTCCCAGCAGGTTTCTGCAGCCGTGGCTTTGCTCAGCCAGAAAGCTGGAAGCCAAGGTCTGTCCCTGGACACCTTGAAACAAGCCAAGCTACCTCATGCAAACATCCCTTCCACCACCAGCTCTGTGTCCCCGGGGCTGGTGTCCTTCGCCCTGAGGCCGGACGGGACGAGGGTGCTCCCGAACCGCCTCCCGGGTTTGATACCTCAGGCCCCGGGCTCTGTGCTCTTCCAGAGCCCTTTCTCCACGGTGGCGTTAGACCCGTCCAAGAAAGGGAAGGGGAAGCCACCCAACGTGTCCCCGGTGGATGTCAAACCCAAAGACGAGGCCGCCCTCTACCGGCACAAGTGTAAGTACTGCAGCAAGGTTTTTGGGACTGATAGCTCCTTGCAGATCCACCTCCGTTCCCACACTGGAGAGAGACCCTTCGTGTGCTCGGTCTGTGGCCACCGGTTCACCACCAAGGGCAACCTCAAGGTGCACTTCCATCGACACCCCCAGGTGAAAGCAAACCCCCAGCTGTTTGCCGAGCTCCACGACAGAATGGCCGCAGGCAGCGTCCCCTACGCGCTCCCTGTACCTGTCCCCGTAGATGAATCCAGTCTCTCTTTAGACAGCAAACCCGTCCTGGTCACAGGGACCCCCAGTGCAGGGCTACCTCAGAATCTCTCTTCGGGGACTAACCCCAAGGACCTAATGGGTGGCCCACTGGCCAACGACCTGCAGCCTGGGCCTTCTCCAGAAAGTGAGGACGGACCCCTGCTCTCTGGGGTGGGGCCCAACCATAATCCCCCAAGGGTTGGTGTCTTCCAAGGGAGAGGGACACCCGAGCCAGGGTCGGAGACCCTGAAGTTGCAGCAGCTGGTGGAGAACATTGACAAGGTCACCAGCGACCCCAATGAATGTCACATTTGCCACCGTGTCTTAAGCTGCCAAAGCTCCCTCAAAATGCATTACCGCACCCACACCGGGGAGAGGCCGTTCCGGTGTAAGATCTGTGACCGAGCCTTCTCCACCAAAGGCAACCTGAAGGCACACTTCGGGGTTCACCAAACCAGCACGTCCATAAAGACGCAGCATTCGTGCCCCATCTGCCAGAAGAAGTTCACCAACGCGGTCATGTTGCAGCGGCACATCCGGATGCACATGGGCGGTCAGATTCCCAACACACCGCTGCCGGAGAGTCCCTGCGACTTCACGTGTCCCGAGCTGGTGATGGTCACAGAGAACGGCAGCTCGGGGGCCACCTGTCATGACGACGTCGTCGAAAGCATTGATGTCGATGAGGTGGGCTCCCAGGATGTCCCCAGCAGCTGCTCAAAGGTCCCCGTGCCTCTCTCCAGCATCCACTCGGCATCACCCACGCCAGGGTTCGCCACGGGGAAGGTGGGTTCCGCTCCTGTGGTCCTTCAGCGGCAGAACAGCAGAGAGAACGGTTCTGTGGAGAGCGACGGCTTGACCAACGACTCGTCCTCGGTGATGGGTGACCAGGAGTATCAGAGTCGAAGTCCAGATGTGCTGGAGACCACGTCCCTTCAGGCCCTCTCCCCGGCCAATAGCCAGGCAGAGAGCAGCAAGTCCAAGTCCCCTGACGCTGGCGGCAGAGCGGACAGCTCGGAGAGCAGCCACCCTGAGACGGAAGGTCGCAGCAGCCTGCCGTCAGCATTTGTCCGAGCCCAGCCAACCTACGTCAAAGTGGAGGTCCCCGGTGCGTTCGGCCCCGCGGCCATGACCCCGGGCATGGCGCCCTTGTTGGCCCAGCCCCGCCGCCACGGCAAGCAGCACACGTGCACGCGGTGCGGGAAGAACTTCTCGTCGGCCAGCGCCCTTCAGATTCACGAGCGGACTCACACCGGGGAGAAGCCCTTCGCCTGTAACATATGTACTCGGGCCTTCACCACCAAGGGCAACCTGAAGGTCCACTACATGACCCACGGCACCAACAACAGCTCCACGCGCCGCGGGAGGAAGCTAGCCATCGAGAACACCATGGCTCTTCTGGGAGCAGATGCAAAGAGGGTCCCAGAGGTGTTTCCCAAGGAAACCATAGCCCCTTCGGTGAGTGTGGACCCGGTGGTATGGAACCAGTACACCACCATGCTCAACGGCGGTCTGGCCATGAAGACCAACGAGATCTCAGTGATCCAGAGTGGGGGCATCCCTACTCTCCCTGTGTCCCTTGGGGCCAGCTCCGTCGTCAGTAACGCCACGGCCTCCAAGCTGGATGGCTCTCAGTCGGCTCTGGGTGCCGATGTGGAAAAGCCGGGTGCTGCGGACAGCGTCCCCAAACCCCAGTTCCCCCACTTCCTGGAAGAAAACAAGATTGCGGTCAGCTAA

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