Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name SALL4P7
Plot displaying the genomic locations of a retrocopy (in chr14) and its respective parental gene (in chr20). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr14:60494555-60494714  UCSC
Coordinates (T2T) chr14:54700866-54701025  UCSC
Coordinates (hg19) chr14:60961273-60961432  UCSC
Strand -
Parental Sequence NM_020436.5
Parental seq. overlap 133 bp
Parental seq. overlap (%) 2.6%
Genomic Region Intragenic (C14orf39)
Retrocopy Summary SALL4P7, located on chr14:60494555-60494714, is a retrocopy of the parental gene SALL4. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SALL4
Full Name spalt like transcription factor 4
Also known as DRRS|HSAL4|IVIC|ZNF797
Coordinate chr20:51782331-51802521
Strand -
Gene summary This gene encodes a zinc finger transcription factor thought to play a role in the development of abducens motor neurons. Defects in this gene are a cause of Duane-radial ray syndrome (DRRS). Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Dec 2015]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes SALL4P4
Bonobo Pan paniscus SALL4P5
Gorilla Gorilla gorilla SALL4P5
Orangutan Pongo abelii SALL4P5
Green monkey Chlorocebus sabaeus SALL4P3
Crab-eating macaque Macaca fascicularis SALL4P3
Rhesus Macaca mulatta SALL4P3
Baboon Papio anubis SALL4P2
Golden snub-nosed monkey Rhinopithecus roxellana SALL4P4
Mouse lemur Microcebus murinus SALL4P1
Dolphin Tursiops truncatus SALL4P1
Panda Ailuropoda melanoleuca SALL4P1
Pale spear-nosed bat Phyllostomus discolor SALL4BP1
Velvety free-tailed bat Molossus molossus SALL4BP1
Greater mouse-eared bat Myotis myotis SALL4BP2
Sloth Choloepus didactylus SALL4P2
Gibbon Nomascus leucogenys Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Cat Felis catus Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SALL4P7
AGAGCCAAAGTCCAGATGCCGTGGAAACCATGGCCTTCCAGGCACTCTACCCAGCCAATAACCAAGCAGAAGCTATCACATCAGAGTCTCCCAATGCTAGGGCAAAGCTGAGAGCTCTGACAATAGCTGCACCAAGATGGAAGGTCGGAGCAGTCTCCCG
>NM_020436.5
AATTACTGGGACATGCGCGTTCCGGCCGAAGGGGGGTAAATTTCCCAACTCCAGGAATTTGTGGCGGAGAGGGCAAATAACTGCGGCTCTCCCGGCGCCCCGATGCTCGCACCATGTCGAGGCGCAAGCAGGCGAAACCCCAGCACATCAACTCGGAGGAGGACCAGGGCGagcagcagccgcagcagcagACCCCGGAGTTTGCAGATGCGGCCCCAGCGGCGCCCGCGGCGGGGGAGCTGGGTGCTCCAGTGAACCACCCAGGGAATGACGAGGTGGCGAGTGAGGATGAAGCCACAGTAAAGCGGCTTCGTCGGGAGGAGACGCACGTCTGTGAGAAATGCTGTGCGGAGTTCTTCAGCATCTCTGAGTTCCTGGAACATAAGAAAAATTGCACTAAAAATCCACCTGTCCTCATCATGAATGACAGCGAGGGGCCTGTGCCTTCAGAAGACTTCTCCGGAGCTGTACTGAGCCACCAGCCCACCAGTCCCGGCAGTAAGGACTGTCACAGGGAGAATGGCGGCAGCTCAGAGGACATGAAGGAGAAGCCGGATGCGGAGTCTGTGGTGTACCTAAAGACAGAGACAGCCCTGCCACCCACCCCCCAGGACATAAGCTATTTAGCCAAAGGCAAAGTGGCCAACACTAATGTGACCTTGCAGGCACTACGGGGCACCAAGGTGGCGGTGAATCAGCGGAGCGCGGATGCACTCCCTGCCCCCGTGCCTGGTGCCAACAGCATCCCGTGGGTCCTCGAGCAGATCTTGTGTCTgcagcagcagcagctacagcagATCCAGCTCACCGAGCAGATCCGCATCCAGGTGAACATGTGGGCCTCCCACGCCCTCCACTCAAGCGGGGCAGGGGCCGACACTCTGAAGACCTTGGGCAGCCACATGTCTCAGCAGGTTTCTGCAGCTGTGGCTTTGCTCAGCCAGAAAGCTGGAAGCCAAGGTCTGTCTCTGGATGCCTTGAAACAAGCCAAGCTACCTCACGCCAACATCCCTTCTGCCACCAGCTCCCTGTCCCCAGGGCTGGCACCCTTCACTCTGAAGCCGGATGGGACCCGGGTGCTCCCGAACGTCATGTCCCGCCTCCCGAGCGCTTTGCTTCCTCAGGCCCCGGGCTCGGTGCTCTTCCAGAGCCCTTTCTCCACTGTGGCGCTAGACACATCCAAGAAAGGGAAGGGGAAGCCACCGAACATCTCCGCGGTGGATGTCAAACCCAAAGACGAGGCGGCCCTCTACAAGCACAAGTGTAAGTACTGTAGCAAGGTTTTTGGGACTGATAGCTCCTTGCAGATCCACCTCCGCTCCCACACTGGAGAGAGACCCTTCGTGTGCTCTGTCTGTGGTCATCGCTTCACCACCAAGGGCAACCTCAAGGTGCACTTTCACCGACATCCCCAGGTGAAGGCAAACCCCCAGCTGTTTGCCGAGTTCCAGGACAAAGTGGCGGCCGGCAATGGCATCCCCTATGCACTCTCTGTACCTGACCCCATAGATGAACCGAGTCTTTCTTTAGACAGCAAACCTGTCCTTGTAACCACCTCTGTAGGGCTACCTCAGAATCTTTCTTCGGGGACTAATCCCAAGGACCTCACGGGTGGCTCCTTGCCCGGTGACCTGCAGCCTGGGCCTTCTCCAGAAAGTGAGGGTGGACCCACACTCCCTGGGGTGGGACCAAACTATAATTCCCCAAGGGCTGGTGGCTTCCAAGGGAGTGGGACCCCTGAGCCAGGGTCAGAGACCCTGAAATTGCAGCAGTTGGTGGAGAACATTGACAAGGCCACCACTGATCCCAACGAATGTCTCATTTGCCACCGAGTCTTAAGCTGTCAGAGCTCCCTCAAGATGCATTATCGCACCCACACCGGGGAGAGACCGTTCCAGTGTAAGATCTGTGGCCGAGCCTTTTCTACCAAAGGTAACCTGAAGACACACCTTGGGGTTCACCGAACCAACACATCCATTAAGACGCAGCATTCGTGCCCCATCTGCCAGAAGAAGTTCACTAATGCCGTGATGCTGCAGCAACATATTCGGATGCACATGGGCGGTCAGATTCCCAACACGCCCCTGCCAGAGAATCCCTGTGACTTTACGGGTTCTGAGCCAATGACCGTGGGTGAGAACGGCAGCACCGGCGCTATCTGCCATGATGATGTCATCGAAAGCATCGATGTAGAGGAAGTCAGCTCCCAGGAGGCTCCCAGCAGCTCCTCCAAGGTCCCCACGCCTCTTCCCAGCATCCACTCGGCATCACCCACGCTAGGGTTTGCCATGATGGCTTCCTTAGATGCCCCAGGGAAAGTGGGTCCTGCCCCTTTTAACCTGCAGCGCCAGGGCAGCAGAGAAAACGGTTCCGTGGAGAGCGATGGCTTGACCAACGACTCATCCTCGCTGATGGGAGACCAGGAGTATCAGAGCCGAAGCCCAGATATCCTGGAAACCACATCCTTCCAGGCACTCTCCCCGGCCAATAGTCAAGCCGAAAGCATCAAGTCAAAGTCTCCCGATGCTGGGAGCAAAGCAGAGAGCTCCGAGAACAGCCGCACTGAGATGGAAGGTCGGAGCAGTCTCCCTTCCACGTTTATCCGAGCCCCGCCGACCTATGTCAAGGTTGAAGTTCCTGGCACATTTGTGGGACCCTCGACATTGTCCCCAGGGATGACCCCTTTGTTAGCAGCCCAGCCACGCCGACAGGCCAAGCAACATGGCTGCACACGGTGTGGGAAGAACTTCTCGTCTGCTAGCGCTCTTCAGATCCACGAGCGGACTCACACTGGAGAGAAGCCTTTTGTGTGCAACATTTGTGGGCGAGCTTTTACCACCAAAGGCAACTTAAAGGTTCACTACATGACACACGGGGCGAACAATAACTCAGCCCGCCGTGGAAGGAAGTTGGCCATCGAGAACACCATGGCTCTGTTAGGTACGGACGGAAAAAGAGTCTCAGAAATCTTTCCCAAGGAAATCCTGGCCCCTTCAGTGAATGTGGACCCTGTTGTGTGGAACCAGTACACCAGCATGCTCAATGGCGGTCTGGCCGTGAAGACCAATGAGATCTCTGTGATCCAGAGTGGGGGGGTTCCTACCCTCCCGGTTTCCTTGGGGGCCACCTCCGTTGTGAATAACGCCACTGTCTCCAAGATGGATGGCTCCCAGTCGGGTATCAGTGCAGATGTGGAAAAACCAAGTGCTACTGACGGCGTTCCCAAACACCAGTTTCCTCACTTCCTGGAAGAAAACAAGATTGCGGTCAGCTAAGGGAGAACTTGCGTGGAAGGAGCAATGCAGACACAGTGAAATCTCTAGAATCTGCTTTGTTTTGTAAGAACTCATCTCCTCCTGTTTTCTTTTTCTTACTGATATGCAAATGATGTTTACTACGTTGGTTGTGACCACAACCTCAGGCAAGTGCTACAATCACGATTGTTGCTATGCTGCTTTGCAAAAAGTTGAAAAAATAAAAAAAAAATGCATACCAAAACAAATACAGACTCtttttttttgagatggagtctcgctctatcacccaggctggagtgcagtggcatgatctcggctcactgcaacctccccattctgggttcaagtgattctcctgccttagcctccagagtagctgggattacaggcaggtgccaccacgcccggctaattttgtattttgagtagagactgggtttcaccatgttggtcaggctggtctcgaactgctgacctcgtgatccacccgccttggcctcccaaagtgctgggattacaggcatgagctaccacgcctggcACTTTTTTTTTTTTTTTCTAATTTTGGAAAGAAGCGGGTCTTGCAAAGTAGCTTTGTTACTTGTAACAGACGTATACATAGAACCTTTGTACAACCTAGAGTGACTTTTTCCAAAGACTGTTACCTATTTCAAGGTAGAATCGTTGGAACTTACTGAACAACAGTGGAAAAGACAACTACACAGCCTCATTGAGGGGAGATGGGTACTGTATACTTACTGGTAACTGGACACGGGTAAAAGGACAAGGTCTGTCATCTCTTTAGGGACCTGTTTTATATGCCCCAACCCTGTCCCCATCTTATTGTTTTTTTTTGAATGTACTTAAAAAAGGAACAACAAAAAACTAGGGTTGTAGAATTATAAAACTGCTTCAACCTTAGAACCTTAAGTAGGAGGCCCTCAAATGGACTTACGTTAGTCCTTAGGGAGTCAATGTGTGTGTTGCTGCTTATTTAAATACAGTTCAGTTGGAGCCCCGAGAGTGCCAATGTTTTCCCCACACCTCTTGGATGCCTTCCTCTTCCCAAATCCCAGAAGAGGTGGGCACCTGAGCGGGGAATCTCAGGTGACTTAGTTTGCCAGTGCCTACTCTATTGAAGAACTGGGTTTTCATGCTCGAGAAGAAACTCGTGGAAGGGCGTGTTTCCCATCACAGGTTCACATACTGATTGCTTTTGTTGAATTTCCTTGGTGCGACTTATGCCAAGTAATTATGACGATTTTTTGTTTTGTTTTGTTTCCTTGCTGAATATTTCATGAAGGCTACGAAGTTAGAACAGGCACGTCCTGGGTGTGAAAGCTTTAATTTATCTACCTCATTTATTTTTTATTTTTTGTAGCCATAGTGTCTATTTTCCTATTTTAAGACCGCTGAAGTATTCCCAGGCCCTGTCTAAAGCCTAAGAGTTGATGTATTGGTGGGAAGAGGTGAACGTTCAAGATGATTTTGTGATGCCTTTTTTTTTTGTAGTTTCCTTTGTAAATGTGATATTGAGCAAACGAAACATTGCTCTTGGTTTAACAAGAAAGAAAGAAAAAAACTCTAATTTCTGGGAGAAAAGTCTTTCCCCTCTATGTGGAAGGTCCTGACGGAAATATGCATCCAAGACGATTAGCCAAAGTGTTGTCTCTTCATCGTTGCACCTGACTTTAGGATTCCGCCCCCCttttttttttttttttttttttttGCCAAGTTGTGCCTTTCCTTCTGGAATTGTAAGTGAACACGATAATAGTACCTGTTTACACTGTGAAGTGGATATTGTTACAGAAAACACACCAGTGGCTTTCTCACTGTTGAGCTAATAATGCCTTGTGAATGTATGATCTACGGAGAAACCCCTGTAGTTGTACCTGCTGATGCTGTCTGTCTGTTGGAAAATAAAATTTGAATGTTTTTTTTTCTCA

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