Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name PTP4A1P2
Plot displaying the genomic locations of a retrocopy (in scaffold_m13_p_5) and its respective parental gene (in scaffold_m13_p_1). Each line represents a retrocopy.
Species Rousettus aegyptiacus
Coordinates scaffold_m13_p_5:66533234-66533729  UCSC
Strand -
Parental Sequence PTP4A1_x2
Parental seq. overlap 418 bp
Parental seq. overlap (%) 79.9%
Genomic Region Intergenic
Retrocopy Summary PTP4A1P2, located on scaffold_m13_p_5:66533234-66533729, is a retrocopy of the parental gene PTP4A1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name PTP4A1
Full Name N/A
Also known as NULL
Coordinate scaffold_m13_p_1:112708694-112717358
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Marmoset Callithrix jacchus PTP4A1P6
Mouse lemur Microcebus murinus PTP4A1P2
Rabbit Oryctolagus cuniculus PTP4A1P1
Pig Sus scrofa PTP4A1P1
Cow Bos taurus PTP4A1P4
Sheep Ovis aries PTP4A1P4
Dolphin Tursiops truncatus PTP4A1P4
Horse Equus caballus PTP4A1P3
Dog Canis familiaris PTP4A1P3
Panda Ailuropoda melanoleuca PTP4A1P3
Cat Felis catus PTP4A1P5
Pale spear-nosed bat Phyllostomus discolor PTP4A1P8
Sloth Choloepus didactylus PTP4A2P4
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>PTP4A1P2
GTGGAAGTCACATATGGGAACATGAGATTTCTTATTGCACACAATCCAACCAGCGCAACCTTAAACAAATTTATAGAGGAACTTAAGAAATATGGTGTTACCACAATAGTAAGGATGTGTGAAGCAATGTATGATACTGTTCTTGAGGAGGAAGAAGGCATCCAGGTTCTGGATTGGCCTTTTGATGATGTTTCATCACTGTCTAACTAGATTGTTGATGACTGGTTAAATCTTGTAAACATTAAATTTCGTGAAGAACCTGGTTGTTGTATTGATGTTTACTGTGTTTTAGGTCTGGGGGGAAATCCCGCGCTTGTTGCCCTAGCCTTAATCAAAGGTGGAATGAAAAATAAAGATGTGGTACAGTTTATATGACAAAAACGGTGTGGAGCTTTTAACAGCATTCAACTTTTGTATTTGGAGAAATAGTGTTCTAAGATGTGACTGCACTTCAAAGACTCCAGCGGTCATAGAAACAAATGTTGGATTCAATAAA
>PTP4A1_x2
ATGGCTCGAATGAACCGTCCAGCTCCTGTGGAAGTTACATACAAGAACATGAGATTTCTTATTACACACAATCCAACCAATGCGACCTTAAACAAATTTATAGAGGAACTTAAGAAGTACGGAGTTACCACAATAGTAAGAGTATGTGAAGCAACTTATGACACTACTCTTGTGGAGAAAGAAGGCATCCATGTTCTTGATTGGCCTTTTGATGATGGTGCACCACCATCCAACCAGATTGTTGATGACTGGTTAAGTCTTGTTAAAATTAAGTTTCGTGAAGAACCTGGTTGTTGCATTGCTGTTCATTGTGTTGCAGGCCTTGGGAGAGCTCCAGTACTTGTTGCCCTAGCATTAATTGAAGGTGGAATGAAATATGAAGATGCAGTACAATTCATAAGACAAAAGCGGCGTGGAGCTTTTAACAGCAAGCAACTTTTATATTTAGAGAAGTATCGTCCTAAAATGCGGCTGCGATTCAAAGACTCCAATGGTCATAGAAACAACTGTTGCATTCAATAA

Publications

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