Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name PTP4A1P2
Plot displaying the genomic locations of a retrocopy (in chr5) and its respective parental gene (in chr6). Each line represents a retrocopy.
Species Microcebus murinus
Coordinates chr5:69585273-69585944  UCSC
Strand +
Parental Sequence XM_020287131.1
Parental seq. overlap 589 bp
Parental seq. overlap (%) 24.5%
Genomic Region Intergenic
Retrocopy Summary PTP4A1P2, located on chr5:69585273-69585944, is a retrocopy of the parental gene PTP4A1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name PTP4A1
Full Name N/A
Also known as -
Coordinate chr6:53514787-53524581
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Green monkey Chlorocebus sabaeus PTP4A1P1
Crab-eating macaque Macaca fascicularis PTP4A1P7
Rhesus Macaca mulatta PTP4A1P7
Baboon Papio anubis PTP4A1P5
Golden snub-nosed monkey Rhinopithecus roxellana PTP4A1P6
Marmoset Callithrix jacchus PTP4A1P6
Rabbit Oryctolagus cuniculus PTP4A1P1
Pig Sus scrofa PTP4A1P1
Cow Bos taurus PTP4A1P4
Sheep Ovis aries PTP4A1P4
Dolphin Tursiops truncatus PTP4A1P4
Horse Equus caballus PTP4A1P3
Dog Canis familiaris PTP4A1P3
Panda Ailuropoda melanoleuca PTP4A1P3
Pale spear-nosed bat Phyllostomus discolor PTP4A1P8
Egyptian rousette Rousettus aegyptiacus PTP4A1P2
Sloth Choloepus didactylus PTP4A2P4
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Cat Felis catus Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>PTP4A1P2
ttaactaaatTAACATGGCTCCAATGAACCACCCAGCTCCTGTGGAAGTCACATACAGGAACATGAGATTTCTTATTACACACAACCCAACCAGTGCAACCTTACACAGATTTATAGAAGAACTTAAGAAATACGGAGTTACCACAATAGTGAGAGTATGTGAAGCAACCTATGATCCTGCTCTTGTGGAGAAAGAAGGCATCCAGGTTCTGGATTGGCCCTTTGATGATGGTTCATCACCATCCAAGGAGATTGTTGATGACTGGTTAAGTCTTGTAAACATTAAGTTTCGTGAAGAACCTGGCTGTTGTATTGCTGTTCACTGTGTTGCAGGTCTTGGGAGAACTCCAGTGCTTGTTGCCCTAGCATTAATTGAAAGtggaatgaaaaatgaagatgCAGTACAGTTTATAAGACAAAAGCGGCGTGGAGCTTTTAACAGCAAGCAACTTTTGTATTTGCAGAAATACCATTCAAAAATGCGGCTGTGCTTCAAAGACTCTGGTGGTCACAGAAACAACTGTTGCATTCAATAAAACTTGGCTGTCTGATACTATTGCCTTGGAAGTGGAACTTGAGACAGGActtaatttattatacatattagcCAACATATAGGTTTAGTGTTTAAGTCTAATGAAGCTTCCATAGGAATATTGAAAAGC
>XM_020287131.1
CCGCCTGcatcgccgccgccgccgccccgcgaCGACCACCGCcgccccctgccctgcagccgccgccaccgccgccgcctgTGTCGCCGCCGCCTCGGGACCGGCTGTATGATTAGGCCACAATCTTCAATGAGTAAACATATTCCTTTCTGTGGTGTTCTTGGTCACACATTTATGGAGTTTCTGAAGGGCAGTGGAGATTACTGCCAGGCACAGCACGACCTCTATGCAGACAAGTGAACTGTAGAAATTCATTACTACTCCACCAAGAAGCCCCCATAAGAGTGGTTAACCTGGACACAGAAGTGTTGAATTGAAATCCGCAGAGCATTTTTACAAGAGTTCTGACCTGGATGGGGTAAACCTCAGTGCACTTTTCTGTTGCCTCAGTATTACTGGATTGAAGAATTGCTGCTTCTTGTTAGGAGGTTCATTTCATTTACCATTACTTCCAACTTCATACTCAAAGCACTGAGAATTTCAAGTGGAGTATATTGAAGTAGACTTCAGTTTCTTTGCATCATTTctgtattcaattttttaaattctttcataaCCCTATTGAGTGTTTTTTAACTAAATTAACATGGCTCGAATGAACCGCCCAGCTCCTGTAGAAGTCACATACAAGAACATGAGATTTCTTATTACACACAATCCAACCAATGCGACCTTAAACAAATTTATAGAGGAACTTAAGAAATATGGAGTTACCACAATAGTAAGAGTATGTGAAGCAACTTATGACACTACTCTTGTGGAGAAAGAAGGCATCCATGTTCTTGACTGGCCTTTTGATGATGGTGCACCACCGTCTAACCAGATTGTTGATGACTGGTTAAGTCTTGTAAAAATCAAGTTTCGTGAAGAACCTGGTTGTTGTATTGCTGTTCATTGTGTTGCAGGCCTTGGGAGAGCTCCAGTGCTTGTTGCTCTCGCATTAATCGAAGGTGGAATGAAATATGAAGATGCAGTACAATTCATAAGACAAAAGCGGCGTGGAGCTTTTAACAGCAAGCAACTTTTGTATTTGGAGAAGTATCGTCCTAAGATGCGGCTGCGCTTCAAAGACTCCAATGGTCATAGAAACAACTGTTGCATTCAATAAAACTGGGGTGCCTGATGTTACTGCCTTGGAAGGAAAATTTGACACAGGACctaatatgtcatatatattagCCAACATGTTGGCTTGGTGAATAAGTCTAATGAAGCTTCCATAAGAGTATTGTAAAGCGGTTTTACCAGGCCACAAGTTTAACAGAATTGCAACTTATGTGTCTGGGTTACGGTTAGCCTTTTTGGACACTTAGCAAAAGATTCTTGCTGTTCagcatttaaaatgtgcttatCATTTGTACCAATTGACCTTTCCTGAAATCATGCGGTATTGAGTTATGTCTTGTTTAATCTATTCCATGCCAGaatctttatcaaatatatagaaatttagaaagattAGGTGCAAAATACCCAGCACAatacttgtatatttttagtatCATACAGAACTAAAATCCCAGGAACTATGAACACTCTAGACCTTATATGGTTTATCCATTTCAGACATTGAAAGTAGGGCCTACATGGTTATTTGCTGCTCCACTTTGTTTACATCTCCCACATTTATACCAGTATACATCAGGTTTGCTtaaccattgattttttttattattattatttttaccaagtCTTACAGTGATTATTAATGTCTTTCTGTAAATCTATTTTGTGCTGTTATGAAAAacctccattttaaaaatcacattgtacAGAAGCACATGTCTTTAATGTCTTCAGACGAAAACGCCTTACAGTTAATTTAATGTTTGCACTCTGAGGTGCAACTTAACAGGGAGGGCCTGAAAAAAGAATGGGAggagctattaaatatttttagcaaaatgtTGCCTTTGTCTTGTGCAGAACATGTAGAAAATGCTctttaatttagtaaatattttttaaaaggtagagatGCTTTGTTAATTGTAGCTAAAAACAATTCTTAATCataaatttctgaaattcttgtaatttttttccatacttATCAGAAGTTGTTTATcaacttatttttgtttgaagtgtgatttttttttttctctgttcccaacctctcttgcaaaaaaaaaggtttctgcTAATGAATTGAGCAGacatctaattattttatatgcttttgaGCTATGTACTTAATATTTGGATacttgatatttgttttattatgtaattGATAAAATGGTGATGTGTATTAATGTTAGTCAACCATATATTTATACTGTCTGGAATGTGTGTTATAGTTCTGTGGGAGAAATAATTTGTCAGTGTTCACCAGCTTGTAAAAACTTAGTGCGAGAGCTtaaacatctaaataaataatgaaatgcatTTATCATCA

Publications

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