Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name RPS6P10
Plot displaying the genomic locations of a retrocopy (in scaffold_m13_p_3) and its respective parental gene (in scaffold_m13_p_3). Each line represents a retrocopy.
Species Rousettus aegyptiacus
Coordinates scaffold_m13_p_3:35389242-35389692  UCSC
Strand +
Parental Sequence RPS6_x1
Parental seq. overlap 360 bp
Parental seq. overlap (%) 3.7%
Genomic Region Intergenic
Retrocopy Summary RPS6P10, located on scaffold_m13_p_3:35389242-35389692, is a retrocopy of the parental gene RPS6. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPS6
Full Name N/A
Also known as NULL
Coordinate scaffold_m13_p_3:60473896-60486004
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPS6P12
Bonobo Pan paniscus RPS6P8
Gorilla Gorilla gorilla LOC101131142P9
Orangutan Pongo abelii RPS6P9
Gibbon Nomascus leucogenys RPS6P1
Rhesus Macaca mulatta LOC712274P19
Golden snub-nosed monkey Rhinopithecus roxellana RPS6P24
Dolphin Tursiops truncatus RPS6P8
Horse Equus caballus RPS6P6
Dog Canis familiaris RPS6P2
Panda Ailuropoda melanoleuca RPS6P30
Greater mouse-eared bat Myotis myotis RPS6P39
Chimpanzee Pan troglodytes Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Baboon Papio anubis Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPS6P10
ACAAGGCTTCCCCATGAAGCAAGCTATTTTGACCCATCACTGTGTCTGCCTGCCACTGGGTAAGGGGCATTTCTGTTATAGGCCAAGGATAACTGGAGGAAGGAAACACAAATCTTTTTAACGTTCCATTGTAGATGCCGCTGAGTGTTCTTAACTTGGTCGTTATTTTTAAAAAAGGAAAAGGATATTCCTGACTTACTGGTAACTATTGTGCCTTGTTGCTATATGAACGTGCAAATGTTCAGTATTGCTAAAGAAGATGATGTTCGTCAGGGTGTTGTGAGAAAGCCCGTGAATAAGGAAGTTAAGAAACCCAGGATTAAAGTGCCCGAGATTCAGTGTTTTGTTATCTCACGTGTCCTGCAACACACACATGAGTGTATTGCTCTGAAGAAACAGTGTACTAAGAAAAATGAGGATGAGGCTATAGATTTTGGTAAACTTTTGGCCA
>RPS6_x1
accatcccttttcatccctgtatctccagcccctaacctggtgctgacataaagtaggtgctcggtacatgtttgttgagtgaTATTGAAGATCCTCCCATGGCTGTTCCCTGTCCGAATTAATCCAGAACACCTCAGCACCAAGGTCAGGCTTCCATCTCCTCCTCGTAGTGAGGTCAGCTTGGGTCAAACTCCTAGGGAAATACTTCCAAAAGCAGCACAACTTAAAACAGATGGAGAGGACATGGGTCATGACAGCGATGATGATGTGGTAGGGAGGATGGGAATAGCTAACATTCACTGAAAGTCTACTGTGCACCAGGAAGTGTTTAACTTTTTTGGCATATTAGTTCATTTATCTCTGACAAGAACTGTATTAGGAAAGTATTGTCACCATTTTAAGATGGAGAAACAAAGGCACAAGGAGAGCAAGTAAGTTGTCCAAGGTCACATAGCTATTACGGAATGAAAATACATGGGACAAAAGAAGATTGCCCTGACACATGACTTGATCTGATTTaaaaaaaaaaaaaaaaaaaaaaaaaGATTTATTCTTGCACTCTTTCTGTCATCCCCTTTCCTTCCTGCCCTCCACGAAATATTTCATAATTATATGCTGGAGCTTATTTTCAACAACTCTGTAAAAACATCCCTTAGTCCCTGACCCGAGGGGTGAGAAATCCATTGTAATTCTTGCTCCTGAATACAGTTACAGAAATAATGCCAAGGAGTTTTCCTAGCTTCATTCCTTTGGTTTAACTTCCTTCCCCAAACACAGTGTGGCATATTTTAAAAATTAGTTTCTTCCTACAAATAGAAATTGCCCTTGACATTTAGTTTTTTGTGTCTAAGGTGATCTTTTTTCTTGTTTCCTTGACCTCAGCCAAATATGAAACAGCTTACTAACATGCACAAACTCATTTCCTCCTTTACTATTTATCTTCCTTTCTGTATTTATACCTCTTTTTGGAAAATATCCCTTTTCTCAAACATACTTGAAAAACTTATTTACCAGTGAGTGAGGGAAAATTTTTACCTTTACTGATTGCTTCTAGAATTACTTTAACTTAATGTTATTGAATACAAAAATGTATTGTTTAGTCAGGATCCTTGTTGTTGAGAGATTCCACCTTTGGGCCCTGTTATAAGCTGAATTGTGTCCTATCCCAGCTCCTCCCCCCATCCCAATTTTTATCTTGAAGAatatcttgaggtcctaacccccaatacttcagaatgtgactgcatttggagatagggtctttaaaggggtaattcagttaaaatgaggttatgagggtgggccctaatccaataggactggtgtccttataaaaagaggagagtagggcacagacacacacagagggaagaccatgtgaagaaacagagagaagatggtcatctgtaagctaaggaagggcctcagaagaaaccagtcctgccaatatcttggtctcaaacttctagctccaaaactatgagaaaataaatttccactatttagccacccagtttgtggcactttgttataggagccctaccaaattaatacaGGCCCCTGCTCAAAGCCCACCTCTTTTACTGTGTCAAATGCTCAGCCTCCAAGCCCATATACCCAACAACCTattagatgtctctacttgtatatcccatagacacttcacactctgtctccaaaatatctccccatttcccccaccccctgcccctggcaatcatgattctaatttctgtttctatgagtttagcactgttttttgtttgtttgtttgtttgtttgttttagattccacatgtgagattataaagtatttgtctttcttcgtctggcttatttcacttagcataatgtcctcaaggtccatccatgttgtggcaaatggcagaatttcctttttatggctgaataatattccattgtatcatatacttttcctttattcatttatccattgattggacacttaggttgtttccatgtcttggctattgtgaataatgctgcagtgaacatggggttacagatatctGtgttagttccccaggctgatgggattacttccagaatcacagtcttgttaggttggtgccagtaataagaatattactgggtctgcagtggtgtccatggtcaaggggcttgttaccaggggcttggaccagcgtggatcccatctggtccctggtagtatgtgactgccatcattactttgttcagtagggtgatgctagaacaaacgttcgcttcaggcatcacagcagggtcctctgacagcctgttaccaggtgtgtggatgtagttcccaccaggtctgtgggaggacctggtaatcggatagatccctgagtggtcagaactggctatggactgtggccgagaaggcctaaaatggaggcccatgcctgtgtcaggtttcacagccaacactgaggtctgcagacctggctctggaggcatgaattggcatttctcctgccaggtccctggatgggctgaactgctccatgaccatggctagagaagcctgaggcaagcatagggccctttcaggatttccaggtgACAAAAGGAGTGTTTTCTGTTGGTCCTTGGAaaaccagagggcaactgagtccggggctgtgctgcctgtgccactcagccaatagaccgacacgggagttgggatatttacaataagtgtttattgtcagagcacaagtgatcttagaaggcaacgggttaacaccttcaaaaactgccttgcattctcagtccggcttaggggtatttaagggaaaatctgggcattaatccagggggcccattatgcttcacagagccggagccattcctctgacaacatggtcctctggtggcatcagtaacccaggaacaaaggtgggaatagtctggaaagaatgctagaccagaaagattgtgatcagtaaacataagggaattaatcataagtttcagggcaaatttctatggcaggggacattccaagctctgggtcaagccaccggggacagtctgttgttaagctatcagacaaggaaaagtgaagccaggaatgctgtgaggtttctaccaccgggggcccaatggggcccttcttcaTTTGTGCTAACAGGACTGTTTGAGGATTACAGCTAGGACAGGCTGGAGCTCAGTTACGGGGCCGTTTCAAAACCTACATTTTGACCAAGTTTAGTAGGCTTTCTTTCAGGggctcccaggtcacagccgaatggctggagccaattcatgtgccacttcagagtccgcagccaggaccgaagtttgtgtgcttactacccaatacacaggtggacatgactcctcctggatcccctagcacatggtgctggtgacagaaccaaagctaaatggggccgtagccaagtcctcaggtttttggagctgtttctaggtctgtagctccaaccatggtaggcagttcagctacttggggggcaggcctgcctccttctcaaaactgctctcctgggtcttggactgcacagggatttcacaatctacctggatctcaaagttctcccaaaggcatttttgtccctggatagatgccaaattattgttggtggggggactatgagcaagggatatcttactctactaactcattgttaccactTAAGAATTCCTTTTATAAAATTTTGACTTCTATATAAAGTTATAAATATTCTTAAAAATAGGATAAAAAAGAAAACCATAAATTTTatatgtagatggccctctgtatctgtgggttctgccttcacagattcaactatccgcagatcaaaagtatttgaaaaaaaatgttaagttgttgctggtgcatactatgtagttaggcctacaatggctacatctgtactgaactctttttttttcttatcattattccctaaataatacagtgtaacaactatttacatagtgtttccattgtattaggtattataagaaatctagagatgatttataataggcatacctcagagttattgtgattttgattccagaccaccacaataaaatgaacatcacgataaagtgagtcacatgatttttttggtttaccagtgcatataaaagttatgtttccactgtaccatagtctaactaaatgtgcaatagtgttacatctaaaaaaaaaacaatgtgtataccttaatttaaattttttttaaaaaatgccaaccatcatctgagccttcggtgagtcataatctttttgccagtggaaagtgttgcctcagtgttggctgctgactgatcagagtagtagttgctgaaagttggggtggctgtggcaatttcttaaaataatacaacaattaagtttgtactattgactcttcctttcacctatgacttctctgtagcatgtgatgctgtttgatagcattttatccacaatagaacttctctcaaaattggagtcgaccctctcaaaccctgccgctactttatcaactaagattatgtaatattccaaatcctttgttgtcatttcaagccttcatagcaacttcaccagtagattccacctcaagaaaccactttctttgttcatccataagaagcaactcctcatctgtgaaagttttatcataagattgtaggaattcagtcacatcttcaagatcaacttctacttctacttgctatttctacaatatctgcatttacttcctccaccaaacttttgaacccttcaaacttatcaatgagggttgaaatcaacttcttccaaactctcattaatgttgatattttgacctcttcccatgaatcacaaatgttcttaatggtatcaggaatggtgaatcccttccagaaggttttcaatttactttgctcagactcatcagaggaatcgctaactatggcagttgtagccttgtgaaatgtatttgttaaataagacctggaagtttaaattactccttgatccatgggctgcagaatggatgctgtgttagcaggcatgaaaacataaatctcattgtacatttccatccgagctctcgggtgaccaggtgcaatgtcaatgagcagtaatattttgaaagggatctttttttctgatcagtgggtctcaacagttagcttagaatattcagtaaaccatgttgtaaaagatgtgccatcatctaggctttgttgctccatttacagagcactggcagagtcaatttagcataattcttaagggccctaggatttttggaacggtaaatgaacattggctttaccttaaactcaccaggtgcattaccccctaataagagagtcaggttgtcctttcaaactttgaaaccaggcattgacttctctctagttatgaaaagttctaagtagcatcttcttccagtacaaggctgtttcatctacattgaaaatctgctgttcagtgtagccaccgtcattaattatcttagatcttctagataacttgctgcagcttctacatcagcagttgatgcttcaccttgcacttttgtgttatggagacagcttctttccttaaacctcatcaagctctgctaacttcaaacttctgcagctttcttacctctctcagccttcatagaattgagagttagggccttgctctggattaggatttggcttaaaggaatgttgtggctggtttgaaacattcctcagcagatgaatgaataagcaaagtacggtatacatatacaatggattattttcagctttgaaaaggaaatcctgtcacatgctacacaacatgggtgaaacttgaggacattatgctaagtgaaataagcttatcacaaaaagacaattattgtatgattccatttatatgaagtgcctgaagtagtaaaattcatagaaacaggaagagggatggctaccaggactgggggtgtggggaagggtgttatttttaatgggtatacagttctagttttgcaagatgaaaaagttagggagatctgtttcacagcaatgtgaatatgcttaacactacggaacttgtatatgtaaaattggttaaATATTATGTTTTTATCATATAAATAAAATGCATAAAAAAAAGAGAAAGAAACCTGAGCAATAGTCCTGGACTTTACTCTTTGCCTCATATAAACTTACTACCACTATGTcaataaaaaataaacagagctaaaaaaaaatgggcaaaggactggaacagacatttctccagaagagatatacaaatggccaacagataaataaaaagatgttcaacatcattagtccttagggaaatgcaaatcaaaaaccataatgaggtatcactttacactcactaggatggctataatttaaaaagaaaataacaaaataagttttgaccaggatatgaagaaactgtactcctcatacattgctggtggaaatgtaatatggttcagctgctgtgaaaatagtttggaattcttccaggagttaaacacagaattaccacatgacccagcaattccactcccaggtatatacccaaaggaattgaaaacaggtactgaaacatgccagcactattcacaatagtcaaaagttggaaacagccaaaagtccatcaatggatgaatggataaaaatattgtggtctatgcatagtggaaaattattcaattataaaaaagaatgaagtattgatatatgctatacaacatgacgaatttgaaaaaaatattagaagccaggtcaggttacatattgattaattctatttacctgaaatatatagaataaataaatccatagagacaacacagactacttgataggtgaggtgaatggggagcaattgctgcaataggtataggatttcctttggggataatgaaaatgttttggaactagatagaggtggtgtttgcacaatattgtgaatgtactaaatgccatttaattgtccacttaaagtgattTTGTTATTTTGCTACAACAACAAAAAAATTATATATGCAAGTTTTAAATgcatttcaccaacattctatatattaacaacaggtgatcaaacaggattagtagaatctttcaactttgaatgtgaagcagacctaagctgaaaatattatgatactaaagcaaatcaaagggatgtaatAACCTTGGAAAGCAAAAATTATTTTTATTTACTTGAAATGCAGTTCTCTTGAAAAAAAATGTAATAGGCAATAAATGTTCTTTCTTTCCAAGTATTGATTGAGAGTGTGGGGTACAGTTAGATCACACGAGTTCGCATTCTCCCAGGCATGTTCTGGAAGACTATCAAATGCATTGTATCTTTCCCACATCTTTCTGTACTAAGAGTTGCATCATTGTTGATTCAAAATTTACCACATACATCCACTTTTCCCTCTGCTGGCTGCCTCCATACTACCACACTCTAATGGACTAAATCTACCAGAGCTGGGGTTATAACCATTTAAAAATATTTACTAAGCATTTATGTATTATGTGCCATACACTTTCCTGGGTTCTGAGTATATCATAGTAAAGACTTAATTTTTCATCTAGTAGAAAGACCATGAACAACCTATTTATATATCATGATTAAGTACTGTAAAATAGTGCTATACCAGAGAATGAGAGGGATATTATTTGAGGCAGTGTTATCAGGCAAGGTTTCTCTTAGGAGGGATATCTAACCCGAAAGACTTGCATGGCATTAACCAACGGCAGTAGTGAGTTTGGGACTGTGTAAAGCTTTTTTTAAGGCCAGTACACTTTTCAAGCTAGCGTTACAGGGCGGCAAAGGATATTATTCTGTGACAGAACAACAATGACTACAGACCGGTTACAGGACAAGCGATGCTCGAGTATTTAAGGGAAAAACAAATAAGGTTTTCGGGGTGTCTTGCTATGACTGCCAGAATTAGGGCGGGCAAGACACGTTCCCGAAATGAAAATCTTCCAACGGAGTCTGAACTACAGGAAAGCCTAAGCGAGCTGAACTCCGGTCTCAGTCTCTTCCTTGGGTAGTATCAAAGGTAGAGTGTCAGACATCGAACTGGGGCTCCGCCCTAGCCCACGGGAACGTGGAAAACCTCAGGCAGGGACGAGTCTAACCTTCCGAGGTGAACCTGTGCCACAGACGGTGCTGACTCGCGGATTACCAGAACCCTCCACCTGACTGCTGGTTATCTCCACCCCCGGAAGTGCCTCCAACCCGATTACTTCCGCTATGCCAGGATTTTTTTTTTTTTGTCTCGCGAGAACTGAAAGTGTCTATGTGATCTCTAAGCGGAAGTCAGGCCTCTTTTTCGTGGCGCCTCGGAGGCGGTCGGCTGCTTCAGGATGAAGGTACGAAATGGTAGCGGGTGTTGAACTAGGCTTGGGGTGCGTCCATCGTACCCCAAAACACGGTGTTGCCGCAGTGGTAGCTCGCCAAAGCCTTGGCTCTAGGTAGAGAAGGGTCTGCGGTAGGAGGAAGCTCGCCCTTAATAGGGCCGGAGCTTCTTGGGAAAGTGGATGGCGAGAGATTGCTGCTGGAGCCGGGCCATGTCGGGAGGCCATGGTGGCGTCCGGACAGATGCGGCCATACTGGCCAGTTGGCGTCCCACGGGTTGGGTTCCTTACTCCGAGAGAGGGTGAATGGCAGCAGATCACCCTTCGCCCCAGCTCCTCCGCAGGGCTTGGAAAAATGTGTCCTATTTTTAGTGCGGTGTTTCTTGCGCGTAATTATGCACACGTGCTTCAGTGAATAAAATCAATATTTCAAGTTTTCTGATTGTATGGAGGTGACATGAAAGGATTTTTGCAATGGAATGCTTTTGTAGGTGGTTCTGCAGTTTTCGTAAAGCTCTTTTTTCCCCCCTGCCCCGCTTAAATTCTTAGCTGAACATCTCTTTCCCAGCCACTGGCTGCCAGAAGCTCATTGAAGTGGACGATGAACGAAAACTTCGTACATTTTATGAGAAGCGTATGGCCACAGAAGTTGCTGCTGACGCTCTGGGTGAAGAATGGAAGGGTTATGTGGTTCGAATCAGTGGTGGAAACGACAAGCAAGGTTTCCCCATGAAGCAGGGTGTCTTGACCCATGGCCGTGTCCGCCTGCTACTGAGTAAGGGGCATTCCTGTTACAGGCCAAGGAGGACTGGAGAAAGAAAGCGCAAATCTGTTCGGGGTTGCATTGTGGATGCCAATCTGAGTGTTCTCAACTTGGTCATTGTGAAAAAAGGGGAGAAAGATATTCCTGGTCTCACTGATACTACTGTGCCTCGTCGCCTGGGGCCCAAAAGAGCTAGCAGAATCCGCAAACTTTTCAATCTCTCTAAAGAAGATGATGTCCGCCAATACGTTGTGAGAAAGCCCCTAAACAAAGAAGGTAAGAAACCTAGGACCAAAGCACCCAAGATTCAGCGTCTTGTTACTCCACGCGTCTTGCAGCATAAACGTCGGCGTATTGCTCTGAAGAAACAGCGTACTAAGAAAAATAAGGAAGAGGCTGCAGAATATGCTAAACTTTTGGCCAAGAGAATGAAGGAGGCCAAAGAGAAACGCCAGGAACAGATTGCCAAGAGACGTAGACTTTCCTCTCTGAGAGCTTCTACCTCTAAGTCTGAGTCCAGTCAAAAATGAGATTTTGTAAGAGT

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