Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RAP2AP1
Plot displaying the genomic locations of a retrocopy (in scaffold_m20_p_2) and its respective parental gene (in scaffold_m20_p_3). Each line represents a retrocopy.
Species Pipistrellus kuhlii
Coordinates scaffold_m20_p_2:14723127-14723633  UCSC
Strand +
Parental Sequence RAP2A_x1
Parental seq. overlap 412 bp
Parental seq. overlap (%) 74.5%
Genomic Region Intergenic
Retrocopy Summary RAP2AP1, located on scaffold_m20_p_2:14723127-14723633, is a retrocopy of the parental gene RAP2A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RAP2A
Full Name N/A
Also known as NULL
Coordinate scaffold_m20_p_3:149844540-149869871
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RAP2AP1
Chimpanzee Pan troglodytes RAP2AP1
Bonobo Pan paniscus RAP2AP1
Gorilla Gorilla gorilla RAP2AP1
Orangutan Pongo abelii RAP2AP1
Gibbon Nomascus leucogenys RAP2AP1
Green monkey Chlorocebus sabaeus RAP2AP1
Crab-eating macaque Macaca fascicularis RAP2AP1
Rhesus Macaca mulatta RAP2AP1
Baboon Papio anubis RAP2AP1
Golden snub-nosed monkey Rhinopithecus roxellana RAP2AP1
Marmoset Callithrix jacchus RAP2AP4
Pig Sus scrofa RAP2AP1
Sheep Ovis aries RAP2AP1
Horse Equus caballus RAP2AP1
Dog Canis familiaris RAP2AP1
Panda Ailuropoda melanoleuca RAP2AP1
Cat Felis catus RAP2AP1
Pale spear-nosed bat Phyllostomus discolor RAP2CP1
Velvety free-tailed bat Molossus molossus RAP2AP2
Greater mouse-eared bat Myotis myotis RAP2AP1
Greater horseshoe bat Rhinolophus ferrumequinum RAP2AP1
Egyptian rousette Rousettus aegyptiacus RAP2AP1
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Cow Bos taurus Without Homology
Dolphin Tursiops truncatus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RAP2AP1
CATGCGAGAGTACAAGGTGGTGGTGCTGGGCTCGGGCGGCGTGGGCAAGTCGGCGCTCACCGTGCAGTTCGTGACGGGCTCGTTCATCGAGAAGTACGACCCGACCATCGAGGACTTCTACCGCAAGGAGATCGAGGTGGACTCGTCGCCGTCGGTGCTGGAGATCCTGGACACGGCGGGCACGGAGCAGTTCGCGTCCATGCGGGACCTGTACATCAAGAACGGCCAGGGCTTCATCCTCGTCTACAGCCTCGTCAACCAGCAGAGCTTCCAGGACATCAAGCCCATGCGGGACCAGATCATCCGCGTGAAGCGCTACGAGCGCGTGCCCATGATCCTGGTGGGCAACAAGGTGGACCTAGTGGAGCTGCCCCTTCATGGAGACGTCGGCCAAAAACAAAGCCTCGGTGGACGAGCTGTTCGCCGAGATCGTGCGGCAGATGAACTACGCGGCGCA
>RAP2A_x1
ATGCGCGAGTACAAAGTGGTGGTGCTGGGCTCGGGCGGGGTCGGCAAATCCGCCCTGACCGTGCAGTTCGTGACCGGCACCTTCATCGAGAAATACGACCCCACCATCGAGGACTTCTACCGCAAGGAGATCGAGGTGGACTCGTCGCCGTCGGTGCTGGAGATCCTGGACACGGCGGGCACGGAGCAGTTCGCGTCCATGCGGGACCTGTACATCAAGAACGGCCAGGGCTTCATCCTCGTCTACAGCCTCGTCAACCAGCAGAGTTTCCAGGACATCAAGCCCATGCGGGACCAGATCATCCGCGTGAAGCGGTATGAGAAAGTGCCAGTCATCTTGGTTGGGAACAAGGTGGACCTGGAAAGTGAGAGAGAAGTGTCATCCGGTGAAGGCAGAGCCCTTGCTGAAGAGTGGGGCTGCCCCTTTATGGAGACTTCTGCTAAGAGCAAAACAATGGTGGACGAACTCTTCGCAGAAATCGTGAGGCAAATGAACTATGCTGCGCAACCTGACAAAGATGACCCGTGCTGTTCTGCATGTAACATACAATAG

Publications

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