Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name ERO1AP1
Plot displaying the genomic locations of a retrocopy (in scaffold_m19_p_3) and its respective parental gene (in scaffold_m19_p_1). Each line represents a retrocopy.
Species Myotis myotis
Coordinates scaffold_m19_p_3:165449550-165449860  UCSC
Strand -
Parental Sequence ERO1A_x1
Parental seq. overlap 263 bp
Parental seq. overlap (%) 6%
Genomic Region Intergenic
Retrocopy Summary ERO1AP1, located on scaffold_m19_p_3:165449550-165449860, is a retrocopy of the parental gene ERO1A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ERO1A
Full Name N/A
Also known as NULL
Coordinate scaffold_m19_p_1:186461124-186505791
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens ERO1AP1
Gorilla Gorilla gorilla ERO1AP1
Pig Sus scrofa ERO1AP1
Cow Bos taurus ERO1AP1
Horse Equus caballus ERO1AP1
Dog Canis familiaris ERO1AP2
Pale spear-nosed bat Phyllostomus discolor ERO1AP1
Kuhl's pipistrelle Pipistrellus kuhlii ERO1AP1
Egyptian rousette Rousettus aegyptiacus ERO1AP1
Sloth Choloepus didactylus ERO1AP1
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ERO1AP1
GAAATCTTTCTAAAATTATGGATTGTGTTGGTTAGCTTAAATGTCAACTGTGGGGAAATATTCTGACTCCAGGCTTGGGCACTGCTTTGAAGGTCTTGTTTTCAAAGAAATTGACAGCAAATATGCAGAAAGTGGGCCCACGTATGAATACCATCTTACTAGACAAGAAGTAGTATCATTGTTTAATGCATTTGGAACAATTTCAAAGTATAAAAGAATTGGAAAACTTCAGGAACTTGCTGCAAAATATTCATTACAGAAATTAGTTGAAATGTGCCTATTTCTGGAAACAGAGGCCAAAGAGTGGAATA
>ERO1A_x1
GGCGGGGCCGGCGCGGGCTTCATCTGCGGACGCACGGCCTGCTCCCCAGAGCTGGTTCTCCAGGGCGCCGGGCGACGACCGGCTGGATCGGCTATGGACCGCCGCTGGGGCTTCCTGATCGGCCTCCTGAGCGCCGTGTGGCTGCTGCTCCGCTCGGGCCACGACGAGCCGCGGCCCCCGGAGACGGCGGCGCAGAGGTGCTTCTGCCAGGTCAGTGGTTACTTGGATGATTGTACCTGTGATGTTGAAACCATTGATAAATTTAATAACTACAGGCTTTTCCCAAGACTACAAAAACTTCTTGAAAGTGACTACTTTAGATATTACAAGGTAAACCTGAAGAGGCCCTGCCCTTTCTGGAAAGATATCAGCCAGTGTGGAAGAAGAGACTGTGCCGTCAAGCCTTGTCAATCTGATGAAGTTCCTGATGGAATTAAATCTGCAAGCTACAAGTATTCTGAAGAAGGCAATAATCTCATTGAAGAATGTGAACAGGCTGAACGACTTGGAGCTGTGGATGAGTCTCTGAGTGAGGAAACGCAGAAGGCCGTTCTTCAGTGGACCAAGCATGATGATTCCTCAGACAACTTCTGTGAAGCTGATGACATACAGTCTCCTGATGCTGAGTACGTAGATTTGCTCCTTAATCCTGAGCGCTACACAGGTTACAAGGGACCAGATGCTTGGAGGATATGGAATGTCATCTATGAAGAAAACTGTTTTAAGCCACAGACAATTAAAAGACCTTTAAATCCTTTGGCTTCCAGTCAAGGTGAAATTTCAGAGAACACATTTTACAGCTGGCTAGAAGGTCTCTGTGTAGAAAAAAGAGCCTTCTACAGACTGATATCTGGCCTGCATGCAAGCATTAATGTGCACTTGAGCGCACGGTATCTTCTACAAGATACCTGGTTAGAACAGATATGGGGACACAACGTAACAGAATTTCAGCAGCGGTTTGATGGAATTTTGACTGAGGGAGAAGGTCCAAGAAGACTTAAGAATTTGTATTTTCTCTACTTAATAGAATTAAAGGCTTTATCTAAAGTGGTACCATTCTTTGAGCGCCCAGATTTTCAACTCTTTACTGGGAATAAAGTTCAGGATGCAGATAACAAAATGTTACTTCTGGAAATACTTCATGAAATCAAGTCATTTCCTTTGCATTTTGATGAGAATTCGTTTTTTGCTGGGGATAAAAAAGAAGCAAACAAACTAAAGGAGGAATTTCGACTGCATTTTAGAAATATTTCAAGAATCATGGATTGTGTTGGTTGTTTTAAATGTAGACTGTGGGGAAAGCTTCAGACTCAGGGTTTGGGTACTGCTCTGAAGATCTTGTTTTCTGAGAAACTGATAGCAAATATGCCAGAAAGTGGGCCCAGTTACGAATTCCAACTCACCAGACAAGAAATAGTATCATTATTTAATGCATTTGGAAGAATTTCTACAAGTGTGAAAGAATTAGAAAACTTCAGGAACTTGTTGCAAAATGTTCGTTAAAGAAAATGAGTTGAGATGTGCCTGTTTTGGACAATGGAGGTCAAAGAGTGGAATTTCATTCAAAGGCATAACAACGACAGTCTTAAGGCAAATATTTTATAAAGCTGCTTTTGTAAAAGGAGAATTATATTATTTTAAGTAAACATTTTTTAAAATTGTATTGTCTATGTATAATATTGTGAATAAAAGATACTTTGGTAATGTGGTACAAATTTTAAAGTTTAATATTGAATAAATCAGGATTATTAAATTCATATATGTTAGCAGTACCTGATGTTCTAAGTCTCTCAAACTAGAATTTTGTGTAAGATGTAATATAAATAAAACTATGGCCAATGTGACAAGTGTTTAATAAAAAAATACTAAGGAGGCTCATGAATAACCCATAATTAACAGCCTAAAAGTTTTCAATACATTtagacttaactgatttagtaaataaaaatacagaatgcccagttatatttgagtttcagataaacaaaaacttttaaaaatataagtatgttgcatgcaatatttgggacatacttaaaacaaaaaaattattccttatttaaaattcaaatttaactggttagctttgtgttttatctggcaactccaAAATATATTGATATGAAAAAAATGTCACTTTTAGAATTATGTTACTATTTTGATTGGCTTGGTTTTGTTTGTTGAAAGATACAATCAGAACTAAATGGTATAGGGGATTTCTATGCATTGTGAAAAGTTGAAAAGATTTATACATTTATTCTCATAATACTTTACCTAATATTGAATAAATTTAGGAGAAATCttttatttttatataatttcaaatttacaggaaagtttctaggatagtacgaagaacttttatccagattcattgattgttaatatttgctttatctttcttgctctctctatatacacatactatttttaactcaatcatttgaaagtcagtgacaggccctttgaaccctacataccttagtttgtaATACTGAGTAATTTATTTAATATGATTTTTTTCAGGAAAAAAAAATCTGGAACTGTAATGTGATAAGCCTTACAATAAGGAATCATTTTGAGTTTGTTTTGTCGCCCTTTTAATGTTTGATCTGTAAACTCACAGGGATGTCATTTAATTTATTTTTTGGTATTCATTTCCTTTTTCTCCTTAAAAACTGAACTTTTGGAGGTTTTATTAGTGAAAGCTCTTCAATGATAAAAATTTTTGAAGGGGTTTGGGAATTTATATCACATGGTGGTTATAGAGAAAAAAGAAACTATACCTCAAAATTATGTGCCTCTTTATATGTCACATTATTAATGAAGTAGGGTTTATTTATATAATGGTTTAGAAATGTCATTTTACACTGCTGTATtctttttcttctctgtgtccctaagacctggtgtagtgttaaacacatagtgggtatccaataaatatttgttgaatgaatgTATGAATATGTACTCTGTATATTTTAAATGAATAATTTCAGAGCTAAGTTTAACAATATGTTGTATTTCCCTTTTTCCCCTTCATTTGAATAGGGTAGGAAAAGAAAGACATTAACTTACTAGTTAAATCAATATTCTTGGAGACTCAAAGGACTATGAAATAATTACCATATATAAAAGTTTAAGGACATTTGTAGTGCTCTGAAAATGTGGTAGATGGATTTAAATGGTAATTTGCCTGTATACCTCTCTCATGCCCCTGCCCTTTTTTAACAGCCAAAATTTTTTTGAAATAAATTCCTATCTTCACTTTGTCACCTTCCACTTGCTCTTTAGCTAAAATCGGGCTTTTGGCTCTGTAGTTCTTAACAATTTCTTCCTTTGAAGTCTAAACTCCCAGTTCTAAATCCACAGTTCAGGTCAAAAGGCATTTCTTATTTGACTTTATTTTTTATGCATTTGACATTGTTGACAACCCCTTCTTTAAAAATCCCCTTCTAAACCTCTGATTTCCTTATATTTCACTTAATCCTGGATGCCTTTCTTTTACCTGATTTAATTTATACTCCTCAGGCTCTCATTCTTGCTCTCTTAATCACCACCACTTCTTACTTTTGGGTAATTCCAATTCAGTGATTTCTAAATCCTTATCTTTAGCTCAGACTTCTCCATCTGTCTACGACATATCTTTACTTGGTTGTCTTAAAGCATTCATTCTCCCCCAAGCCTACTCTTATACCTATGTTCCTTACTCTGATTAAATTCAGAATCATTATCATCTAAATTCTCTAGGCTCACTCCTTTCCTCCATCTTACCCCTATCCAGTCAGTGTCTAAGTGCTAGGGATTTTATCTCCATATTTCTGATACATCACTGTCTTTTCATTTTAATTGATTGTTCTTACCTAAAGTACTACACTAACCTGTCTTATACCCAGCCTGTTTTTTCTGTTTTGTTCCACGATGCTACTAGAGTGGGTTTTCTAGAAGCACTCTAACAAGGTTCTCTGATGTGTGTCTCCCAGTCCCACGTCCCCCACCACCCACATTTTGATAAAATGGACTTAGAGTTCTTCAAATGCACCATGGTCAGTcccctacaccttggttcatgctgttctctttgcatcaatttgccctagctatccttccccacctggaaaatttctgtccccctgaaggcccccataaagcatcacctctgtgaaatctctcgtttcatcccaggaggaccataactaacttcctttatttgtgttaccactgtaattacaacctacctctattgtggcacttattgtactgtattatttttgttttttaaagcctcctctactagaatgtgagctccttaagggcaggaaaaggaacttgatccatttttgcatctctatagcatagtttttggcatatgaacacttaataaatgaatgtttgttgaataaatTGCTTTT

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