RCPedia: Rtcs

Summary

Retrocopy Name	NKAPP2	Plot displaying the genomic locations of a retrocopy (in scaffold_m19_p_18) and its respective parental gene (in scaffold_m19_p_4). Each line represents a retrocopy.
Species	Myotis myotis
Coordinates	scaffold_m19_p_18:43520463-43520810 UCSC
Strand	+
Parental Sequence	NKAP_x1
Parental seq. overlap	311 bp
Parental seq. overlap (%)	24.8%
Genomic Region	Intergenic
Retrocopy Summary	NKAPP2, located on scaffold_m19_p_18:43520463-43520810, is a retrocopy of the parental gene NKAP. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name	NKAP
Full Name	N/A
Also known as	NULL
Coordinate	scaffold_m19_p_4:41346066-41373409
Strand	+
Gene summary	N/A

Homology

Species	Scientific Name	Retrocopy
Human	Homo sapiens	NKAPP1
Chimpanzee	Pan troglodytes	NKAPP1
Bonobo	Pan paniscus	NKAPP1
Gorilla	Gorilla gorilla	NKAPP1
Orangutan	Pongo abelii	NKAPP1
Gibbon	Nomascus leucogenys	NKAPP1
Green monkey	Chlorocebus sabaeus	NKAPP1
Crab-eating macaque	Macaca fascicularis	NKAPP1
Rhesus	Macaca mulatta	NKAPP1
Baboon	Papio anubis	NKAPP1
Golden snub-nosed monkey	Rhinopithecus roxellana	NKAPP1
Marmoset	Callithrix jacchus	NKAPP1
Mouse lemur	Microcebus murinus	NKAPP1
Cow	Bos taurus	NKAPP1
Dolphin	Tursiops truncatus	NKAPP2
Horse	Equus caballus	NKAPP1
Dog	Canis familiaris	NKAPP1
Panda	Ailuropoda melanoleuca	NKAPP1
Cat	Felis catus	NKAPP1
Greater horseshoe bat	Rhinolophus ferrumequinum	NKAPP1
Sloth	Choloepus didactylus	LOC119523036P1
Mouse	Mus musculus	Without Homology
Rat	Rattus norvegicus	Without Homology
Chinese hamster	Cricetulus griseus	Without Homology
Rabbit	Oryctolagus cuniculus	Without Homology
Pig	Sus scrofa	Without Homology
Sheep	Ovis aries	Without Homology
Pale spear-nosed bat	Phyllostomus discolor	Without Homology
Velvety free-tailed bat	Molossus molossus	Without Homology
Kuhl's pipistrelle	Pipistrellus kuhlii	Without Homology
Egyptian rousette	Rousettus aegyptiacus	Without Homology
Tasmanian Devil	Sarcophilus harrisii	Without Homology
Opossum	Monodelphis domestica	Without Homology
Platypus	Ornithorhynchus anatinus	Without Homology
Chicken	Gallus gallus	Without Homology
Turkey	Meleagris gallopavo	Without Homology
Zebra Finch	Taeniopygia guttata	Without Homology
Budgerigar	Melopsittacus undulatus	Without Homology
Painted Turtle	Chrysemys picta	Without Homology
Lizard	Anolis Carolinensis	Without Homology
Frog	Xenopus tropicalis	Without Homology
Zebrafish	Danio rerio	Without Homology
Drosophila	Drosophila melanogaster	Without Homology

Expression

Related Sequence

>NKAPP2
TTCTCAAGAAGAGAAACCTTTGAACTATGGCCACGCTCTGCTCCCAGGGGAAGGTGCAGCTATGGCCGAGTATGTAAAAGCTGGAAAGCGTATCCCACGAAGAGGTGAAATTGGGTTGACAAGTGAAGAGATTGCTTCCTTTGAGTGCTCAGGTTATGTTATGAGTGGTAGCAGGCATCGCAGAATGGAGGCTGTACGGCTGCGGAAAGAGAACCAGATCTATAGTGCGGATGAAAAGAGAGCCCTTGCATCCTTCAACCAAGAAGAGAGACGGAAGAGAGAGAATAACATTTTGGCCAGTTTTCGAGAGATGGTGTACAGAAAGACAAAAGGGAGAGATGACAAATA

>NKAP_x1
ATGTCTCCGGTGTCTCGCTCGCGCAGCCCGGAGAGGGAAGCCTCGGGCTCCAGGGTGAAACGCCGCAGTTCGTCGAGGAGCCCTAAACCCAGCAAATCTACCCGCTCCCCGCGGGGCCGCCGCTCTCGCTCGCACTCTTGCTCTCGGTCTGGGGATCGGAATGGCCTCAGCCATCAGACAAGTGGCCTCAGCCAAGGCTCCCGAAACCAGCCCTACCGCTCCCGCTCGCGGTCACGCTCTCGAGAGCGGCCTTCTGTGACGCGGGGCACCCCCTTCGCTTCTGCCACCTCGTCTGCCTATTATGGCGGCTACTCACGCCCCTACGGGAGCGACAAGCCTTGGCCTAGCCTCCTGGACAAGGAGAGGGAGGAAAGCCTGCGGCAGAAGAGATTAAGTGAAAGAGAGAGGATTGGAGAATTGGGAGCTCCTGAAGTATGGGGACTTTCTCCAAAGAATCCAGAACCAGACTCTGATGAACATACACCAGTAGAGGATGAAGAGCCAAAGAAAAGCACCACTTCAGCTTCTACTTCAGAAGaagaaaagaagaagaagaagaagTCTAGTCATTCAAAAGAAAGGTCCAAGAAAAGGAGAAAGAAAAAATCATCCAAAAGAAAGCACAAGAAGTATTCTGACGATAGCGACAGTGACTCTGATTCTGAAACAGACTCCAGTGatgaagacacaaaaaggagatcaaagaaagccaagaaaaaggaaaagaagaagaaACGCAGATCGAAAAAATACAAGAAAAAGAAGTCTAAGAAGAGCAGAAAAGATTCCAGTGACTCAAGCTCTAAAGATTCCCAAGAAGAGTTTCTGGAGAATCCCTGGAAGGATAGATCAAAGCCTGAAGAACCCTCAGATTTAATTGGCCCAGAGGCTCCAAAAACACTTGCCTCTCAAGATGATAAACCTCTGAACTATGGCCATGCTCTGTTACCTGGTGAAGGTGCAGCTATGGCTGAATATGTAAAAGCTGGAAAACGTATCCCACGAAGAGGTGAAATTGGTTTGACAAGTGAAGAAATTGCATCATTTGAATGCTCGGGTTATGTAATGAGTGGTAGCAGGCACCGCCGAATGGAGGCTGTGCGGCTACGGAAAGAGAACCAGATCTATAGTGCTGATGAGAAGAGAGCTCTTGCATCCTTTAACCAAGAAGAAAGACGAAAGAGAGAAAACAAGATTCTGGCCAGTTTTCGAGAGATGGTATACAGAAAAACTAAAGGGAAAGATGACAAATAA

>NKAP_x1 

ATGTCTCCGGTGTCTCGCTCGCGCAGCCCGGAGAGGGAAGCCTCGGGCTCCAGGGTGAAACGCCGCAGTTCGTCGAGGAGCCCTAAACCCAGCAAATCTACCCGCTCCCCGCGGGGCCGCCGCTCTCGCTCGCACTCTTGCTCTCGGTCTGGGGATCGGAATGGCCTCAGCCATCAGACAAGTGGCCTCAGCCAAGGCTCCCGAAACCAGCCCTACCGCTCCCGCTCGCGGTCACGCTCTCGAGAGCGGCCTTCTGTGACGCGGGGCACCCCCTTCGCTTCTGCCACCTCGTCTGCCTATTATGGCGGCTACTCACGCCCCTACGGGAGCGACAAGCCTTGGCCTAGCCTCCTGGACAAGGAGAGGGAGGAAAGCCTGCGGCAGAAGAGATTAAGTGAAAGAGAGAGGATTGGAGAATTGGGAGCTCCTGAAGTATGGGGACTTTCTCCAAAGAATCCAGAACCAGACTCTGATGAACATACACCAGTAGAGGATGAAGAGCCAAAGAAAAGCACCACTTCAGCTTCTACTTCAGAAGaagaaaagaagaagaagaagaagTCTAGTCATTCAAAAGAAAGGTCCAAGAAAAGGAGAAAGAAAAAATCATCCAAAAGAAAGCACAAGAAGTATTCTGACGATAGCGACAGTGACTCTGATTCTGAAACAGACTCCAGTGatgaagacacaaaaaggagatcaaagaaagccaagaaaaaggaaaagaagaagaaACGCAGATCGAAAAAATACAAGAAAAAGAAGTCTAAGAAGAGCAGAAAAGATTCCAGTGACTCAAGCTCTAAAGATTCCCAAGAAGAGTTTCTGGAGAATCCCTGGAAGGATAGATCAAAGCCTGAAGAACCCTCAGATTTAATTGGCCCAGAGGCTCCAAAAACACTTGCCTCTCAAGATGATAAACCTCTGAACTATGGCCATGCTCTGTTACCTGGTGAAGGTGCAGCTATGGCTGAATATGTAAAAGCTGGAAAACGTATCCCACGAAGAGGTGAAATTGGTTTGACAAGTGAAGAAATTGCATCATTTGAATGCTCGGGTTATGTAATGAGTGGTAGCAGGCACCGCCGAATGGAGGCTGTGCGGCTACGGAAAGAGAACCAGATCTATAGTGCTGATGAGAAGAGAGCTCTTGCATCCTTTAACCAAGAAGAAAGACGAAAGAGAGAAAACAAGATTCTGGCCAGTTTTCGAGAGATGGTATACAGAAAAACTAAAGGGAAAGATGACAAATAA

Publications

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