Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name NKAPP1
Plot displaying the genomic locations of a retrocopy (in chr6) and its respective parental gene (in chrX). Each line represents a retrocopy.
Species Pongo abelii
Coordinates chr6:28104753-28105111  UCSC
Strand +
Parental Sequence XM_002832050.1
Parental seq. overlap 325 bp
Parental seq. overlap (%) 20.5%
Genomic Region Intergenic
Retrocopy Summary NKAPP1, located on chr6:28104753-28105111, is a retrocopy of the parental gene NKAP. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name NKAP
Full Name N/A
Also known as -
Coordinate chrX:114370497-114388396
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens NKAPP1
Chimpanzee Pan troglodytes NKAPP1
Bonobo Pan paniscus NKAPP1
Gorilla Gorilla gorilla NKAPP1
Gibbon Nomascus leucogenys NKAPP1
Green monkey Chlorocebus sabaeus NKAPP1
Crab-eating macaque Macaca fascicularis NKAPP1
Rhesus Macaca mulatta NKAPP1
Baboon Papio anubis NKAPP1
Golden snub-nosed monkey Rhinopithecus roxellana NKAPP1
Marmoset Callithrix jacchus NKAPP1
Mouse lemur Microcebus murinus NKAPP1
Rabbit Oryctolagus cuniculus NKAPP2
Pig Sus scrofa NKAPP1
Cow Bos taurus NKAPP1
Dolphin Tursiops truncatus NKAPP2
Horse Equus caballus NKAPP1
Dog Canis familiaris NKAPP1
Panda Ailuropoda melanoleuca NKAPP1
Cat Felis catus NKAPP1
Greater mouse-eared bat Myotis myotis NKAPP2
Greater horseshoe bat Rhinolophus ferrumequinum NKAPP1
Egyptian rousette Rousettus aegyptiacus NKAPP1
Sloth Choloepus didactylus LOC119523036P1
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Sheep Ovis aries Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>NKAPP1
ATACCTCTCAAGATGAAAAACCTTTGAACTATGGCCATGCTTTGCTCCCCGGTGAAGGTGCAGCTATGGCTGAGTATGTAAAAGCTGGAAAGCGAATCCCACGAAGAGGTGAGATTGGGTTGACAAGTGAAGAGATCGCTTCTTTTGAATGCTCAGGTTATGTCATGAGTGGTAGCAGGCATCGCAGAATGGAGGCTGTACGACTGCGTAAGGAGAACCAGATCTACAGTGCTGATGAGAAGAGAGCTCTTGCATCCTTTAACCAGGAAGAGAGACGAAAGAGAGAAAATAAGATTTTAGCCAGTTTCCGAGAGATGGTGTACAAAAAGACAAAAGGGAAAGATGACAAGTAATGATTT
>XM_002832050.1
CTAGATCCGGGGAAGGTTTTTGCAGACGTACCCAAAACTGTTTCCAAGGTTTCCTCAGATTTGGGCTGTTCCGCAGCGGCAGGTCCCGGGAACCAAGGCAACAGAAATCTTCCTAGGCTCGCGAGAGCGCCCCCTTCTCCCACGGCTGCTGGGGGCCCCCCAGTAGCAATGGCTCCGGTGTCCGGCTCGCGCAGCCCGGGTAGGGAGGCCTCGGGCTCGGGGGGAAGACGTCGCAGTTCGTCGAAGAGTCCGAAGCCCAGCAAATCTGCCCGTTCCCCGCGGGGCCGCCGCTCTCGCTCGCACTCTTGCTCTCGGTCCGGGGATCGGAATGGACTCAGCCATCAGCTGGGTGGCCTCAGCCAAGGCTCCCGAAACCAGTCCTACCGCTCACGCTCGCGGTCGCGTTCTAGAGAGCGGCCTTCTGCGCCCCGGGGCATCCCCTTCGCTTCTGCCTCCTCGTCAGTCTATTATGGCAGCTACTCGCGCCCCTACGGGAGCGACAAGCCTTGGCCTAGCCTCCTCGACAAGGAAAGGGAGGAGAGCCTGCGGCAGAAGAGATTAAGTGAGAGAGAGAGAATTGGAGAATTGGGAGCTCCTGAAGTATGGGGACTTTCTCCAAAGAATCCTGAACCAGATTCCGATGAGCATACACCAGTGGAGGATGAAGAGCCAAAGAAAAGCACTACTTCAGCTTCTACTTCAGAAGaagaaaaaaagaagaagaagaagTCTAGCCGTTCAAAAGAAAGGTCCAAGAAAAGGAGAAAGAAAAAATCATCGAAAAGAAAACATAAGTATTCTGAAGATAGCGACAGTGACTCTGATTCTGAAACAGACTCCAGTGATGAAGATAACAAAAGGAGAGCAAAGAAAGCCAAGAAAAAGGAAAAGAAGAAGAAACACAGATCGAAGAAATATAAGAAAAAGAGGTCTAAGAAGAGCAGAAAAGAGTCCAGTGATTCAAGCTCTAAAGAATCCCAAGAAGAGTTTCTGGAAAATCCCTGGAAGGATCGAACAAAGGCCGAAGAACCATCAGATTTAATTGGCCCAGAGGCTCCAAAAACACTTACCTCTCAAGATGATAAACCTTTGAACTATGGCCATGCTCTGTTACCTGGTGAAGGTGCAGCTATGGCTGAATATGTAAAAGCTGGAAAACGTATCCCACGAAGAGGTGAAATTGGCTTGACAAGTGAAGAAATTGCATCATTTGAATGCTCAGGTTATGTAATGAGTGGTAGCAGGCATCGCCGAATGGAGGCTGTGCGACTGCGAAAAGAGAACCAGATCTACAGTGCTGATGAGAAGAGAGCCCTTGCATCCTTTAACCAAGAAGAGAGACGAAAGAGAGAGAACAAGATTCTGGCCAGTTTTCGAGAAATGGTTTACAGAAAGACCAAAGGGAAGGATGACAAATAAAGATTTTCTGATTGTCCAGAAGACATTTTTAACAACAAAAAAGAAAGTCTGGGTTCCACACATACATAGGAAAAGATTATTATGTTCTGAGAAAGCTTTATAGTGCTACTGTGCCTTCTATTTAATTCTTTCAGTCCTTCAATAAAAAGCTGCTTATTGATATAACTTTA

Publications

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