Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name SINHCAFP2
Plot displaying the genomic locations of a retrocopy (in chr11) and its respective parental gene (in chr11). Each line represents a retrocopy.
Species Macaca mulatta
Coordinates chr11:98092955-98095441  UCSC
Strand +
Parental Sequence XM_015151388.2
Parental seq. overlap 1641 bp
Parental seq. overlap (%) 48%
Genomic Region Intergenic
Retrocopy Summary SINHCAFP2, located on chr11:98092955-98095441, is a retrocopy of the parental gene SINHCAF. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SINHCAF
Full Name SIN3-HDAC complex associated factor
Also known as FAM60A
Coordinate chr11:32399664-32446199
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens SINHCAFP4
Chimpanzee Pan troglodytes SINHCAFP2
Bonobo Pan paniscus SINHCAFP2
Gorilla Gorilla gorilla SINHCAFP3
Orangutan Pongo abelii SINHCAFP1
Gibbon Nomascus leucogenys SINHCAFP3
Green monkey Chlorocebus sabaeus FAM60AP3
Crab-eating macaque Macaca fascicularis FAM60AP2
Baboon Papio anubis SINHCAFP2
Golden snub-nosed monkey Rhinopithecus roxellana SINHCAFP2
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SINHCAFP2
CCAATCTTTCTAGACAAGGCAGTTGAAGAGGGAGGGCTTAGAAAGGGACTGGCCTGGCGTGCACTCTGCACCTCCGGCATGTTGTTTCGTATGGAATGGATGCTTCTGGAAGATTTGGAAGACTATTGCCCAGAAGAAAAGATGTTTGGTTTTTCCCAAGCCAAAGATGTACCAAAGTATAGAGGGCTGCTGTGTTTGCAGAGTTAAGTCCTCCAGTTCTCGCTTCACTGACAGTAAACGCTATGGAAAGGACTTCCAGAGCTCTCTGGGGCTGCATGAGACATCTGCAATGCCTGTGTCCTGTTTGTGAAAAGATGGAAGACATTGCCAGCAGGATCCAAAAACCCTGGATTCACGTGGCAGATGCAGGGCTGGACCCAGTCTAAAGACTACATTGAAACCAAAGAGAGTGAAAACTGTATCCGGGAAGAGGATAAAAAGCAACCAGACCAATAAACTGCAGAAGGAAGGTAAAGATCACAATGATGATGCTCACAGTACCACCTCAAGTGCCTCCTTGTAACAGCAACCAGTCAGACGATGGCTCAGTTATGGAGATGGCTTCTGGTTCTACCAGAACACCAGGTGTTTTCCTTTTTAGATCTCACGGACTGAAAAAGACAGAAGATACGTAGTGGGTCTGTTTATAAAGGCCATTTTTGGGGAAGTCCTCATCAACTCACATCTGTTCAAGCCTTGCCGCAGGAATACGAAAGCAACTACCGAGAAATCCTAAGGGCAGGGGCCAGAATCTCTGCCCACCTCACTCAGGAGTAGAAACGGGGAACAAAAAGCAATTTAAACTTTGAAAAGACCACAAAACAACTAACTGTTCCTCCTATTTTTAACTTGGATACCTGCTACTCTGCCAAAAAAGAAATTCTAGAATAGTTTTGAATGGGTTATTTTCCCACCAGTCTCACAAATTCTGAAGTCAGTTTCCAGCTTCACAAAAAAAGAATTGTAAATAATATTTAAGATGCTGGATATTTCACAAGAAAGCCAAATGCTGCTATAGGTCTTTTTTAAATACCCTTCTAAGGAATGAAACTAGGGGAATTTCAGGGGACAGAGATGGGATTTGTCATATGCTAAACGGTATGTGGTTTTAGTCCTTCTATATTGAGAAGCAGTGGTTGGGCATTTTTTAAGGTAGCCGGCTACACTTGTTTTCCCTCATGATAATAATTTGTCATAACTCAGTAACATGGACTTGCCCCTAGAGGTAGTTGTTAATAATTTTGAAATATTAAGGTCTTGCCAAGGTTCCAACGATTGAAACCTGTACTACTGATTATTAAGCAGGACAGACTGTGCTTTCTGTTGCAAATACCTTAAAGGAAAAAGTAATTTCTAAATATACAGAAAGGAAAGATGACTGTATATGTTGCATCCTGTGCCACCTCTCTTGATATTAATATTTGATAAAGATTTCAATTTTTATGAAACTTCTAAAGCAGAATCAATGCTCCTCTTGGGGAAATAACAAGTCTTTAGGGTAGCCAAGACCCTATATGAACAGTACCAAAGCATTAACACATAATAGAGAACACATTCTATTAAAAATGTTGAACTATCaTTAAACAAACACACACAAAAGTTAAACTATCTCAAAACTAAAATGTGTAGTCTTCAGGATGGCACAAAACAAAAACTAATGCTTCTTGGGGCACATTTCTTAGAGGAATTGCTGAGTGTGTAAATAATTGACTTCTGTTTGTGTTACATAACTGATGACTTCCTTGAAAATCTGCACAGGTCAGTTTTAGGTCTGGATTACTTCAGCTAACTTTTGTGAAGGTTTTGTCTGTGAAGAGTGGGTGTTTGACTTGGTTCAGCCTATTAGGGTTTTTTCCCACTCTATATTTAAAGTAAAATTTACTAGAAGAAAAGAGG
>XM_015151388.2
GCCGCCGCGTTTCCCGCGCCGCGGAGCTTCTCCCCTTAAAAGGACAATAGAGGCCTCGGGAGCGCGCGCGGTCGCCGGGACTTCTCCCCCTCCCAGCCCGCGACGTGCGCGCGCCCGTATGCAAATAAGTTCGATTCAAGAGAATTTTGTGCCGGGAGCCGCGCGTGCGCAGAGGGAAAGCGGAATCTACACCTTCTCGGCCAGCGGTAGCAACTGCAGAACTGCAGGAGACAATCTTTCTAGACAAGGCAGTTGAGGAGGAGGGAGCGCTTGAGGGGGACTGGCCTGGCGTGCACTCCGCACCTCGGGGACGTTATTGCGCGTGGAACGGCTGCTTTTGGAAGACTATTGCCCAGAAGAAAAGATGTTTGGTTTTCACAAGCCAAAGATGTACCGAAGTATAGAGGGCTGCTGTATTTGCAGAGCTAAGTCCTCCAGTTCTCGATTCACTGACAGTAAACGCTATGAAAAGGACTTCCAGAGCTGTTTTGGATTGCATGAGACTCGTTCAGGAGACATCTGCAATGCCTGTGTCCTGCTTGTGAAAAGATGGAAGAAGTTGCCAGCAGGATCAAAAAAAAACTGGAATCATGTGGTAGATGCAAGGGCTGGACCCAGTCTAAAGACTACATTGAAACCAAAGAAAGTGAAAACTCTATCTGGGAACAGGATAAAAAGCAACCAGATCAGTAAACTGCAGAAGGAATTTAAACGTCATAATTCTGATGCTCACAGTACCACCTCAAGTGCCTCCCCAGCTCAATCTCCTTGTTACAGTAACCAGTCCGATGACGGCTCAGATACAGAGATGGCTTCTGGTTCTAACAGAACACCAGTTTTTTCCTTTTTAGATCTCACATACTGGAAAAGACAGAAGATATGTTGTGGGATCATCTATAAAGGCCGTTTTGGGGAAGTCCTCATTGACACACATCTCTTCAAGCCTTGCTGCAGCAATAAGAAAGCAGCTGCCGAGAAGCCAGAGGAGCAGGGGCCAGAGCCTCTGCCCATCTCCACTCAGGAGTGGTGACTGAGGTTTTTATGTAGAAGGGGaacaacaacaacaaaaaaaaaacaTCTAAATTTTGAAAAGACCACAAAGCAACAAACTGACCCTCttttttttttttttttttttttttttttggagatggagttttgctcttgttgcctaggctggagtgcagtgccgtgatcttagctcactgcaacttccgcctcccgggttcaagtgattctcctgcctcagcctcccaagtaactgggtttataggtgcccaccaccagacccagctaattttttagtttttgtagagacggggtttcaccatgttggccaggctggtctcaaaTGACCCTCCTATTTTTAACTTGGATATCTGCTATTCTGCCAAAACACAATTTCTAGAGTAGTTTTGAATGGGTTGATTTCCCCCAGTCCCACAAACTCTGAAGCCAGTGTCTAGCTTACTAAAAAAAGAGTTGTACATAATATTTAAGATGCTGAGTATTTCATAGGAAAGCTGAATGCTGCTGTAAAGTGCTCTTTAAGTCTTTTTTTTTTTTTTTAATCCCCTTCTAATGAATGAAACTAGGGGAATTTCAGGGGACAGAGATGGGATTTGTTGTATGATAAACTGTATGTAGTTTTTAGTCTTTCTGTATTGAGAAGCAGTGGTTGGGGCATTTTTTAAGATGGCTGGCTACTCTTGTTTTCCCTCACGATAATACATTTGTCATAACTCAGTAACATGGACTTGCCCCTAGAGGTAGTTGTTGATAATTCTGAAGTATTAAGGTCTTGCCAAGCTTCTGATGATTCAAACCTGTACTACTGATTATTAAGCAGGACAGACTGAGCTTTATGTTGCAAATACCTTGGAGGAGAAAGTAATTTCTAAATGTACAGAGAGGTAACTTGACTATATATGTTGCATCCTGTGCCTCCCTTCATATTAATATTTGATAAAGATTTTAATTTATGTAAAACTTCTAAAGCAGAATCAAAAGCTCCTCTTTGGGAAATGGCAAGTCTTTAGGACAGGCGAGACCCTGTATGAATAGTACCAAAGCATTACCGCACGGTAGAGAGCACACTCTATTAAAAATGTTAAGCTATCTGAAAAATAAAATGTGCAAGTCTTCAGGATGGCACAAAACAAAGGTTAATGCTTTTTGGGGCACATTTCTTAGAGGGCTTGCTGAGTGTGTAAATATAATTGACTTTTGTTTGTGTTACATGACTTTGATGACCATTGAAAATCTGCACAATTCAGTTTCAGCTCTGGATTACTTCCGTTGACCTTTGTGAAGGTTTTTATCTGTGTAGAATGGGTGTTTGACTTGTTTTAGCCTATTAAGTTTTTATTATTTTCTTTCACTCTGTATTAAAAGTAAAATTTACTAAAAGAAAAGAGGTTTGTGTTCATGTTAAATGGTTTTGGTTTGGCTTCTTTTAGTCAGGCTTTCTGAACATTGAGATATCCTGAACTTAGCACTCTTCAATCCTAAGATCCCCATGAAAAGCCTCTCACTGGAACCCAAACCACAGTGTGCTCTTACTGCCTCTTTTCTGAATAGTCAGCAAAAGCATCGCCAGTTCAGTCTTTTCAGAATGAGGGAGAAGCATTTGCCTGCCTTGTCATAACAAGACTCAGTGCTTATTTTTTAAACTGCATTTTAAAAATTGGGTAGTATAATAATAACAAGGAGTAAGCCACCTTTTATAGGCACCCTGTAGTTTTATAGTTCTTAATCTAAACATTTTATAATTCCTTCTTTTGGAAAAAACCTACATGCTACAAGCCACCATATGCACAGACTATACAGTGAGTTGAGTTGGCTCTCCCACAGTCTTTGAGGTGAATTACAAAAGTCCAGCCATTATCATCCTCCTGAGTTATTTTGAAATGATTTTTTTTTTTTGTACATTTTGGCTGCAGTATTGGTGGTAGAATATACTATAATATGGATCATCTCtacttctgtatttatttatttattACTAGACCTCAACCACAGTCTTCTTTTTCCCCTTCCACCTCTCTTTGCCTGTAGGGTGTACTGTATGTAGTCATGCACTTTGTATTAATATATTAGAAATCTACAGATCTGTTTTGTACTTTTTATACTGTTGGATACTTATAATCAAAACTTTTACTAGGGTATTGAATAAATCTAGTCTTATTAGAAAATAAAAGGAGCTGTTTTGTGGCTTTGTTTGACAGGTCTTCAGTAAGAATAATGTTTTTGGCCTTCACATATACTCAGTTTAAGTGCTTAGTATTAATAACAAGCCATGAAGGGAATAAATTCCTCTGTACTGAGACATAGACTTTCGAATAAAAGACATTTTAACTGA

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