Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name HAUS6P1
Plot displaying the genomic locations of a retrocopy (in chr20) and its respective parental gene (in chr9). Each line represents a retrocopy.
Species Pongo abelii
Coordinates chr20:27716015-27717801  UCSC
Strand -
Parental Sequence XM_024251877.1
Parental seq. overlap 1235 bp
Parental seq. overlap (%) 26.2%
Genomic Region Intergenic
Retrocopy Summary HAUS6P1, located on chr20:27716015-27717801, is a retrocopy of the parental gene HAUS6. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name HAUS6
Full Name N/A
Also known as -
Coordinate chr9:21588541-21637218
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens HAUS6P2
Chimpanzee Pan troglodytes HAUS6P1
Bonobo Pan paniscus HAUS6P1
Gibbon Nomascus leucogenys HAUS6P1
Green monkey Chlorocebus sabaeus HAUS6P1
Crab-eating macaque Macaca fascicularis HAUS6P1
Rhesus Macaca mulatta HAUS6P1
Baboon Papio anubis HAUS6P1
Marmoset Callithrix jacchus LOC100415051P1
Gorilla Gorilla gorilla Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>HAUS6P1
TTGCAAGCAAGATTTGGAATGTACAGCTTTACCAACCAAGCTTTCAGAAACTAGCCAAAAAGACATTCTCCCCTGCTGTCAGCAATGGGATAGATGTGTTGGGTAGCAGTAAAGAGGAGTATATGAAAATATTGGACCATTCACAGGCTTCTTGTAACAAACCTTCCATGAATAAAACTACATTATGGAACTCTTTTCAGATATCAAGTGGAATTAGTTCTAAGAGTTGTAAGGATATTGATTTTAGCATATTTACTTTTGGCATGAAACTTTTCCGGAGGAAGATGGTCGCCTAAGTGTTAAAAGTTCCAGTAGTTTAGAGTCCAGTTTAAACTAGAGCCAAATAGTCCTGTGGACAGTGGCATTTTTCTAGGAGATGTTATGGTAGATGGACAGACTACTCCAGAATCAGACTTCAATCTTTAGGCTGTTTGCAGTAGACATGAGGCTCTGAAGAAATCTCTTTCCAAGAAAAGGGAAGAATCTTAACTGTCTAATCTAGAAACACTTGAAAGACACAAACTAGAATTGAACCCTACTCCCCAAAATGTGCAAACAGATGATATGCTTAACTATTTGGACATTCATGATATGCACACTCAATATGCAAAACCACCTTTACACATGTCCCTTGGTGAAAGAAAAGTCTCTTTCACCACTAATTAAGTTTCCTCCGGTGGAACAAAGATTGACCACAATACCATGTAGTTTTGGAGAACTTCTACTTAATTCAAATGAAGAAGACATCTTGAATAAGAGCCTTGATGCAACAGAATCTCTGTCTGACTTGACAAGATGAAGCAATACGGAGTTAATATAACTATGATGTACTTAGACTGAAGCTATGCCACAGGATAGAAACTGATTTATAAGTTAAATACATGTTGGAAGTGTAACACTCTTCTTCAATATCTAAAAAATTCTAAATGCCTTTTAGCCTCCTGTAGTATTTTTAGGTAAGGAAAGTATGTTGAATTATTTCTCTTTGTAGGGATATAGGGTTGAAATGTGAGGTATTTGGAAAGCAAATGTCAAGCAATGGGAAGCCATTTTGATTTCTTGAGTACACTTGCAAACATTAAGTGACAAAAGTAGTTGTTTAACTAATTTATTATAATTTCAGTTAATTAACATGAGGATGTGTAGTTTTTGTTGTACCTTCACTAAGTGGTTAATATAATAGCCATTGAAGTTACTGATCTTTCATTTTAAAGAAATAAACAACTTTTATTCTTTCTTTATGGGACATTCTGTATTAACCAGAAAAAGTGAGAAAGGCCTTGGGATGTGTAGTCACACATGACATCACACACATTGTGTGTGATGACAAATTGTAAGACTGGGAAAGCTCTAAACAGGCTTAATGATTATTCAAGTAGATTGATTTTGAGAAATGATGTTTGGTGGGATAAGGTGTATGTGATGATAAGTGAAGACTGGGGCAGAATGATTTTAAAAAAGAAAAAAGATGGAAC
>XM_024251877.1
AGAAACCCGAAGGCCCGAGGATCTGGGCACGACAGCGGTTAAGCAAGCTTAGAGCAAGTCGCTGGCCGCGCAATGCCCGGTGGGTCTTGTAGTTTCTTGGCGGGGCATGGCCGGAAGGGAGGAGAGAAGGACGCATTGCATGGCGGGAGATATAGTCCTTGCGGGAAGTCCCTCCTCCCTTGGAAGCCTGGCGGCGCCGGCGCACACTGCTCTTCCTTAAGGGCGGGAGTCTCGGTTTGTGGTGGCTTCGCTGGGGCAGTGGTGGCCGCACTATACTGTTAGAAACTCAGTTTCCCGGAGGTTGTAAGGCCCTTTAAGGCGAAATGGCTCTGGGCGTGCAAGGAGCAGGCGTTGGCAATGGAAGGACCACCGCGACCTCAGGCTGACCGTAGGGAGGGATCTTGAGGGCCCTCCGAGTCCCCTGGGCTTGCGCTTTCTTTCTTTGCAGCCACCGTGCCTACCGCGAGGATGAGCTCGGCCTCGGTCACCGCTTTCGAGAAGGAGCATCTCTGGATGTATCTGCAGGCGCTCGGCTTCGAGCCAGGCCCGGCAACCATTGCCTGCGGAAAGATCGTGTCGCACACGCACCTCGGAGTGAACATGTTTGACAAGCTGAACCGTGATGCCTTTCATATAGTTTCTTATTTTTTGTTTCAAGTTCTGGACCAGTCTCTCACCAAAGAAGTTTTCAAATTTTGTTGGCCCCCATTTGACCAAAAAAGTGATACTGAATTCCGAAAACATTGCTGTGAATGGATAAAAAGGATTTCTGGTGAATGTGGAAGTAGCTTTCCTCAAGTTGTTGGTTCACTATTTCTTTCTCCTGGTGGTCCTAAGTTTATTCATCTGATGTATCATTTTGCAAGATTTGTTGCAATGAAATATATTAAATCCAATTCTAAAAATTCTTCTCATCATTTTGTAGAGACATTTAACATAAAACCACAGGACTTGCACAAATGCATTGCCAGATGCCATTTGGCACGTAGCAGATTTTTACAAATTTTGCAAAGAGAAGATTGTGTTACCCAAAAATATCAGGAAAATGCACAATTATCAGTTAAGCAGGTACGAAACTTGAGATCTGAATGTATAGGATTGGAAAACCAAATAAAGAAAATGGAACCCTATGATGACCACAGTAATATAGAAGAAAAAATTCAAAAGGTTCGGTCTTTGTGGGCTTCAGTGAATGAAATGCTCATGTTTTTGGAAAAAGACAGAGAAGTTGTTAGTTCGGTCCTTAGTCTTGTTAACCAATATGCTTTAGATGGAACTAATGTTGCTATTAATATTCCAAGGCTCTTACTTGACAAAATTGAGAAACAAATGTTTCAGTTGCACATAGGAAATGTTTATGAGGCTGGAAAACTGAACCTCTTAACAGTTATTCAGTTATTAAATGAAGTCTTGAAGGTGATGAAATATGAACGTTGTCAGGCTGATCAAGCAAGATTGATGGTAGACCTTCACTACCTTGAAAAAGAGACCAAATTTCAGAAGGAAAGATTATCAGATCTGAAACATATGAGGTATAGAATAAAAGATGATCTCACAACTATAAGACATTCTGTTGTTGAAAAGCAAGGAGAATGGCATAAAAAGTGGAAAGAATTTCTTGGTTTGTCTCCTTTCAGTCTAATTAAAGGTTGGACTCCATCTGTAGATCTTTTACCACCAATGTCTCCCCTTTCGTTTGATCCTGCCTCAGAAGAAGTGTATGCAAAGAGTATTCTTTGTCAGTATCCTGCTTCACTTCCAGATACACATAAGCAACATAACCAAGAAAATGGTTGCAGAGGAGGCAGTGATACCTTGGGAGCTCTACATGATCTAGCCAACAGCCCTGCCTCTTTCTTGTCGCAGTCAGTTTCATCATCAGATAGAAACAGTGTTACACTACTTGAAAAGGACACAAAGATGAGAACTCCCAAAGAAAAAAACGAAGCAATTTCTAAGAAAATACCAGAATTTGAAGTGGAAAATTCTCCATTATCAGATGTTCTAAAGAGTACAGAGAGTAGTGCATTTGGAGGGTCTCTGCAAGCTAAAAAAAGTGATCCATTTCAAAAAGAGCAAGATCATCTGGTAGAAGAGGTTGCCAGAGCAGTTTTATCTGATTCACCACAGCTCTCTGAAGGAAAAGAAATAAAATTAGAGGAACTAATTGACTCTCTGGGTTCTAACCCCTTCTTAACAAGGAATCAGATTCCCCGTACTCCAGAAAACTTGATAACTGAAATTAGGAGCTCATGGAGAAAAGCTATTGAAATGGAAGAAAACAGAACTAAAGAACCAATTCAAATGGATGCTGAACATAGAGAAGTATTGCCAGAATCATTACCTGTGTTGCACAATCAAAGAGAATTTAGCATGGCCGATTTTCTTTTAGAAACCACTGTATCAGATTTTGGCCAGTCTCATTCGACTGAAGAGAAAGTTATTTCAGATTGCGAGTGTGTGCCTCAGAAACATGTGCTGACCAGTCACATAGATGAACCTCCAACACAAAATCAGTCAGATTTTTTAAATAAGAAAGTAATTTGCAAGCAAGATTTGGAATATTTAGCCTTCACCAAGCTTTCAGAAACTAGCCGAATGGAGACATTCTCCCCTGCTGTCAGCAATAGGATAGATGTGATGGGTGGCAGTGAAGAGGAGTTTATGAAAATATTGGACCACTTAGAAGTTTCTTGTAACAAATCTTCCACAAGTAAAACTATGTTGTGGAACTCTTTTCAGATATCAAGTGGAATTAGTTCTAAGAGTTTTAAAGATAATGATTTTGGCATATTACACGAAACTCTTCCGGAAGAAGTTGGTCACCTAAGTTTTAATAGTTCCAGTAGTTCAGAGGCCAATTTTAAACTGGAGCCAAATAGTCCTATGCATGGTGGCACTCTTCTAGAAGATGTGGGAGGGAGACAGACTACTCCAGAATCAGACATTAATTTACAGGCTCTTCGCAGTAGATACGAGGCTCTGAAGAAATCTCTTTCCAAGAAAAGGGAAGAATCTTACCTCTTGTATTCCCAAACACCCGAAAGACACAAACCAGAATTGAGTCCTACTCCCCAAAATGTACAAACAGATGATACGCCTAACTTTTTGGACACCCGTGATTTGCATACTGAGCATATAAAGCCATCTTTACGCATGTCCATCGGTGAAAGAAAACGGTCTCTTTCTCCACTAATTAAGTTTTCTCCAGTGGAACAAAGATTGAGAACCACAATAGCATGTAGTCTTGGAGAACTACCTAATTTAAAGGAAGAAGACATTTTGAATAAGAGCCTTGATGCAAAAGAACCACCGTCTGACTTGACAAGATGAAGACGTACCTATTTAATATAACTATGATGCATTTAAATTGAAGCTATGCCACAGGATAGAAACTGAATTATAACTTAAATACATGTTGGAAGTGTAAAAAATTCCTAATGCCTTTTAGCCTTCTTTAATATTTTTAGGTAAGGAAAGTATGTTTGGATTTTTTCTCTTTGTAGGTGTATGAGATTGAAATGTGAAGTATTTGGAAAACAAACATCAAGCAATGGAAAGCCATTTTGATTTCTTGAGTAATCTTGTAAGCATTAAGTGAATGACAAAGTAGTAGTGTAACTAATTTCTTATGTTATAACTTCAGTCAATTAATATAAGGAAAAGTAGTTTTTGTTGTATGTTCACTAAATGGTTAATATAATAGCCATTGAATATACTAATCTTTCATCTTAGAGAACTATACAACTTTTATTGTTTCTTAATGGAACATTCTGGCTAACCAGAAAAAGTGAGAAAAGTAGTACCTTGGGATGTGTAGTCAAGATGACAAATTTTAAGACTGGAAAAGCTCTAAACAGGCTTAATGATTCTTCAAGTAGAATGATCCTGAGAAGTGATGTTTGATGGAATAAAGTGCATGTGATGATAAAGTGAAGACTGGGGCAGAATGATTTAAAAAAAGGAAAAAGATGGAAGAAGATGAGTAGACACTTGCAAGGAACACTGTCAAACTATAAATCCATTCAGTGGGTTGTATAACATTTATATTTAGTCTAATTTAGACTTTGATAATTTAATCCTACTTTTATATTTTAACAAAAATATAAATTAAAATTTTCATTAGTCTGTTTTGTTGTTGGGTTTTTTTTTTTGTGAGGTACTCCCTGTTGGGGGAAAGGAACAAGGAACAACCATCAAAATTCCCCAGTCCCTACAGAATAGCCTCACAGTAACTTGAGAAAACTGAACTTGGGGTTAAATAACTTGTCACGCTTGTAGTCTCCTGCCTCACTCCTTCCGGTGCCCTGCCTAGAAAAAGACTTGTGTCTAGCATCCAAGTGAACACATACTATTGCCCTCTGTGAACCAGGAGAAATGGAACGGGCAATGGAAGGGTGATAGTACCTACAATACCCTTTGTAGACCCCATCTCACTACCATCAAAATCTTGTCCACTAGCCCCCAAAAAACTGGCAAGGAAAGAAGGTGGAGGGGAAATTTATGGAAGTAGATGGCTTAATAGttatttctcttcatttatcttgggctgcctttctctaagttgtttgtcctgtcccagtgtgaagacccatctttctgtgagaaaagacaaaagaaagtaCATGTAACTACCTTCTTTGCAA

Publications

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