Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name HAUS6P2
Plot displaying the genomic locations of a retrocopy (in chr20) and its respective parental gene (in chr9). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr20:31340386-31342173  UCSC
Coordinates (T2T) chr20:33064555-33066342  UCSC
Coordinates (hg19) chr20:29928189-29929976  UCSC
Strand -
Parental Sequence NM_017645.5
Parental seq. overlap 1210 bp
Parental seq. overlap (%) 18.9%
Genomic Region Intergenic
Retrocopy Summary HAUS6P2, located on chr20:31340386-31342173, is a retrocopy of the parental gene HAUS6. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name HAUS6
Full Name HAUS augmin like complex subunit 6
Also known as Dgt6|FAM29A
Coordinate chr9:19053141-19102904
Strand -
Gene summary The protein encoded by this gene is a subunit of the augmin complex. The augmin complex plays a role in microtubule attachment to the kinetochore and central spindle formation. This protein may have a role in efficient chromosome congression and segregation by promoting microtubule-dependent microtubule amplification. Pseudogenes of this gene are located on chromosomes 7 and 20. Alternative splicing results in multiple transcript variants that encode different protein isoforms. [provided by RefSeq, Aug 2012]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes HAUS6P1
Bonobo Pan paniscus HAUS6P1
Gorilla Gorilla gorilla HAUS6P1
Orangutan Pongo abelii HAUS6P1
Gibbon Nomascus leucogenys HAUS6P1
Green monkey Chlorocebus sabaeus HAUS6P1
Crab-eating macaque Macaca fascicularis HAUS6P1
Rhesus Macaca mulatta HAUS6P1
Baboon Papio anubis HAUS6P1
Marmoset Callithrix jacchus LOC100415051P1
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>HAUS6P2
TTTTATTCTTTCTTTATGGGACATTCTGTATTAACCAGAAAAAGTGAGAAAGGCCTTGGGATGTGTAGTCACACATGACATCACACACGTTGTGTGTGATGACAAATTTTAAGACTGGGAAAGCTCTAAACGGGCTTAATGATTATTCAAATAGATTGATTTTGAGAAATGATGTTTGGTGGAGTAAAGTGCATGTGATGATAAGTGAAGACTGGGGCAGAATGATTTTAAAGAAGAAAAAAGATGGAACTAATTTGCAAGCAAGATTTGGAATGTACAGCTTTACCAACCAAGCTTTCAGAAACTAGCCAAGAAGACATTCTCCCCTGCCATCAGCAATGGGATAGATGAGCTGGGTAGCAGTAAAGAGGAGTATATGAAAATATTGGACCATTCACAGGATTCCTGTAACAAACCTTCCATGAATAACACTACATTATGGAACTCTTTTCAGATATCAAGCGGAATTAGTTCTAAGAGTTGTAAGGATATTGATTTTAGCATATTTACATTTGGCATGAAACTTTTCCGGAGGAAGGTGGTCCCCTAAGTGTTAAAAGTTCCAGTAGCTTAGAGTCCAGTTTAAACTAGAGCCAAATAGTCCTGTGGACAGTGGCATTTTTCTAGGAGATATTATGGTAGATGGACAAACTACTCCAGAATCAGACTTCAATCTATAGGCTGTTTGCAGTAGATATGAGGCTCTGAAGAAATCTTTTTCCAAGAAAAGGGAAGAATTTTACCTGTCTAATCTTGAAACACTTGAAAGACACAAACCAGAATTGAGCCCTACTCCCCAAAATGTGCAAACAGATGATATGCTTAACTATTTGGACACTCATGATGTGCACATTGAATATGCAAAACCACATTTACACATGTCCCTTGGTGAAAGAAAAGTCTCTTTCACCACTAATTAAGTTTCCTCCAGTGGAACAAAGATTGACCACAATACCATGTAGTTTTGGAGAACTTCTACCTAATTCAAACGAAGAAGACATCTTGAATAAGAGCCTTGATGCAACAGAATCTTTGTCTGACTTGACAAGATGAAGCAATACGGAGTTAATATAACTATGATGTACTTAGACTGAAGCTATGCAACAGAATAGAAACTGATTTATAAGTTAAATACATGTTGGAAGTGTAACATTATTCTTCAAGGTCTAAAAAATTCTAAATGCCTTTTAGCCTCCTGTAGTATTTTTAGGTAAGGAAAGTATGTTGAATTATTTCTCTTTGTAGGGATATAGGGTTGAAATGTGAAGTATTTGGAAAGCAAATGTCAAGCAATGGGAAGCCATTTTGATTTCTTGAGTACCCTTGCAAACATTAAGTGACAAAAGTAGCTTAACTAATTTATTATAATTTCAGTTAGTTAACATAAGGATGTGTAGTTTTTGTTGTACCTTTACTAAGTGGTTAATATAATAGCCATTGAAGTTACTGATCTTTCATTTTAAAGAAATATACAACt
>NM_017645.5
CTTAAGGGCGGGAGTCTCGGTTTGTGGTGGCTTCGCTGAGGCAGTGGTGGCCGCACTATACCGTTAGAAACTCAATTTCCCGGAGGTTGTGAGGCCCTTTGAGGCGAAATCGCTCTGGGCGTGAAAGGAGCAGGCGTTGGCAATGGAAGGACCACCGCGACCTCAGGCTGACCGTAGGGAGGGATCTTGAGGGCCCTCCGAGTCCCCTGGGCTTGCGCTTTCTTTCTTTGCAGCCACCGTGCCTACCGCGAGGATGAGCTCGGCCTCGGTCACCGCTTTCGAGAAGGAGCATCTCTGGATGTATCTGCAGGCGCTCGGCTTCGAGCCAGGCCCGGCAACCATTGCCTGCGGAAAGATCGTGTCGCACACGCACCTCGGAGTGAACATGTTTGACAAGCTGAACCGTGATGCCTTTCATATAATTTCTTATTTTTTGTTTCAAGTTCTGGACCAGTCTCTCACCAAAGAAGTTTTCAAATTTTGTTGGCCCCCATTTGACCAAAAAAGTGACACTGAATTCCGAAAACATTGCTGTGAATGGATAAAAAGGATTTCTGGTGAATGTGGAAGTAGCTTTCCTCAAGTTGTTGGTTCACTATTTCTTTCTCCTGGTGGTCCTAAGTTTATTCATCTGATGTATCATTTTGCAAGATTTGTTGCAATGAAATATATTAAATCCAATTCTAAAAATTCTTCTCATCATTTTGTAGAGACATTTAACATAAAACCACAGGACTTGCACAAATGCATTGCCAGATGCCATTTCGCACGTAGCAGATTTTTACAAATTTTGCAAAGACAAGATTGTGTTACCCAAAAATATCAGGAAAATGCACAATTATCAGTTAAGCAGGTACGAAACTTGAGATCTGAATGTATAGGATTGGAAAACCAAATAAAGAAAATGGAACCCTATGATGACCACAGTAATATGGAAGAAAAAATTCAAAAGGTTCGGTCTTTGTGGGCTTCAGTGAATGAAACGCTCATGTTTTTGGAAAAAGAGAGAGAAGTTGTTAGTTCGGTCCTTAGTCTTGTTAACCAATATGCTTTAGATGGAACTAATGTTGCTATTAATATTCCAAGGCTCTTACTTGACAAAATTGAGAAACAAATGTTTCAGTTGCACATAGGAAATGTTTATGAGGCTGGAAAACTGAACCTCTTAACAGTTATTCAGTTATTAAATGAAGTCTTGAAGGTGATGAAATATGAACGTTGTCAGGCTGATCAAGCAAGATTGACGGTAGACCTTCACTACCTTGAAAAAGAGACCAAATTTCAGAAGGAAAGATTATCAGATCTGAAACATATGAGGTATAGAATAAAAGATGATCTCACAACTATAAGACATTCTGTTGTTGAAAAGCAAGGAGAATGGCATAAAAAGTGGAAAGAATTTCTTGGTTTGTCTCCTTTCAGTCTAATTAAAGGTTGGACTCCATCTGTAGATCTTTTACCACCAATGTCTCCCCTTTCGTTTGATCCTGCCTCAGAAGAAGTGTATGCAAAGAGTATTCTTTGTCAGTATCCTGCTTCACTTCCAGATGCACATAAGCAACATAACCAAGAAAATGGTTGCAGAGGAGACAGTGATACCTTGGGAGCGCTACATGATCTAGCCAACAGCCCTGCCTCTTTCTTGTCGCAGTCAGTTTCATCATCAGATAGAAACAGTGTTACAGTACTTGAAAAGGACACAAAGATGGGAACTCCCAAAGAAAAAAATGAAGCAATTTCTAAGAAAATACCAGAATTTGAAGTGGAAAATTCTCCATTATCAGATGTTGCAAAGAATACAGAGAGTAGTGCATTTGGAGGGTCTTTGCCAGCTAAAAAAAGTGATCCATTTCAAAAAGAGCAAGATCATCTGGTAGAAGAGGTTGCCAGAGCAGTTTTATCTGATTCACCACAGCTCTCTGAAGGAAAAGAAATAAAATTAGAGGAACTAATTGACTCTCTGGGTTCTAACCCCTTCTTAACAAGGAATCAGATTCCCCGTACTCCAGAAAACTTGATAACTGAAATTAGGAGCTCATGGAGAAAAGCTATTGAAATGGAAGAAAACAGAACTAAAGAACCAATTCAAATGGATGCTGAACATAGAGAAGTATTGCCAGAATCATTACCTGTGTTGCACAATCAAAGAGAATTTAGCATGGCTGATTTTCTCTTAGAAACCACTGTATCAGATTTTGGCCAGTCTCATTTGACTGAAGAGAAAGTTATTTCAGATTGCGAGTGTGTGCCTCAGAAACATGTGCTGACCAGTCACATAGATGAACCACCAACACAAAATCAGTCAGATTTGTTAAATAAGAAAGTAATTTGCAAGCAAGATTTGGAATGTTTAGCCTTCACCAAGCTTTCAGAAACTAGCCGAATGGAGACATTCTCCCCTGCTGTCGGCAATAGGATAGATGTGATGGGTGGCAGTGAAGAGGAGTTTATGAAAATATTGGACCACTTAGAAGTTTCTTGTAACAAACCTTCCACAAATAAAACTATGTTGTGGAATTCTTTTCAGATATCAAGTGGAATTAGTTCTAAGAGTTTTAAAGATAATGATTTTGGCATATTACACGAAACTCTCCCGGAAGAAGTTGGTCATCTAAGTTTTAATAGTTCCAGTAGTTCAGAGGCCAATTTTAAACTGGAGCCAAATAGTCCTATGCATGGTGGCACTCTTCTAGAAGATGTTGTGGGAGGGAGACAGACTACTCCAGAATCAGACTTTAATTTACAGGCTCTTCGCAGTAGATACGAGGCTCTGAAGAAATCTCTTTCCAAGAAAAGGGAAGAATCTTACCTCTCGAATTCCCAAACACCCGAAAGACACAAACCAGAATTGAGCCCTACTCCCCAAAATGTACAAACAGATGATACGCTTAACTTTTTGGACACCTGTGATTTGCATACTGAGCATATAAAGCCATCTTTACGCACGTCCATCGGTGAAAGAAAACGGTCTCTTTCACCACTAATTAAGTTTTCTCCAGTGGAACAAAGATTGAGAACCACAATAGCATGTAGTCTTGGAGAACTACCTAATTTAAAGGAAGAAGACATTTTGAATAAGAGCCTTGATGCAAAAGAACCACCGTCTGACTTGACAAGATGAAGACGTACCCATTTAATATAACTATGATGCACTTAAATTGAAGCTATGCCACAGGATAGAAAATGAATTACAACTTAAATACATGTTGGAAGTGTAACACTGTTTTTCAAGGTTTAAAAAAATTCCTAATGCCTTTTAGCCTTCTTTAATATTTTTAGGTAAGGAAAGTATGTTTGGATTTTTTCCTCTTTGTAGGTATATGAGATTGAAATGTGAAGTATTTGGACAACAAACGTCAAGCAATGGGAAGCCATTTTGATTTCTTGAGTAATCTTGTAAGCATTAAGTGAATGACAAAGTAGTAGTGTAACTTATTTCTTATGTTATAACTTCAGTCAATTAATATAAGGATAGTTTTTGTTGTATGTTCACTAAATGGTTAATATAATAGCCATTGAATATACTAATCTTTCATCTTAGAGAACTATACAACTTTTATTGTTTCTTAATGGAACATTCTGGCTAACCAGAAAAAGTGAGAAAAGTAGTACCTTGGGATGTGTAGTCAAGATGACAAATTTTAAGACTGGAAAAGCTCTAAACAGGCTTAATGATTCTTCAGGTAGAATGATCCTGAGAAGTGATGTTTGATGGAATAAAGTGCATGTGATGATTAAGTGAAGACTGGGGCAGAATGATTTAAAAAAAGGAAAAAGATGGAAGATGAGTAGACACTTGCAAGGAACACTGTCAAACTATAAATCCATTCAGTGGGTTGTATAACatttatatttagtctaatttagactttgataatttaatgctacttttatatttTAACAAAAATATAAATTAAAATTTTCATTAGTCTGTTTTGTTGTTGGGTTTTTTTGTGAGGTACTCCCTGTTGGGGGAAAGGAACAAGGAACAACCATCAGAATCCCCCAGTCCCTACAGAATAGCCTCACAGTAACTTGAGAAAACTGAACTTGGGGTTAAATAACTTGTCACACTTGCAGTCTCCTGCCTCACTCCTTCAGGTGCCCTGCCTAGAAAAAGACTTGTGTCTAGCATCCAAGTGAACACATACTATTGCCCTCTGTGAACCAGGAGGAATGGAACAGGCAATGGAAGGGTGATAGTACCTACAATACCCTTTGTAGACCCCATCTCACTACCATCAAAATCTTGTCCACTAGCCCCCAAAAAACTGGCAAGGAAAGAAGGTGGAGGGGAAATTTATGGAAGTAGATGGCTTAATAGTtatttcttttatcttgggctgcctttctctaagttggttgtcctgtcccagtgtgaagacccatctttttgtgagaaaagacaaaagaaaGCACATGTAACTACCTTCTTTGCAATGGAAAAGGAGAAAGAAAAAATCTTCTCCTAAGTTGCTGTTTTCTTTTATTAGTTAATAAAACAAATCAGGGACTATGCAGGTCTATGGGGAAACCTTTAGTCTGCTTTAAGAAAACTCAGTATCTGAAAATCTTAACTTAGCATGTGATACTGTCTTATCAGCATCTGCAGAAGTGCCAAAGCCACTGCTAGACACTTAATGTGTATTATTTCATTTAATTATATTTTAAATGTGCTTCCTTGGTAATTCTTAAGCTCGAGAAAGAGTTTGAGAACTGCTGCTAGGAAATAGAGATTCACATTTAACCCTGTGGTACTTTTAAGAAGCAGGTACGTTGTTGCATATATACTTGGGTAGAGATTGGTAACTATCTGATAGGGAAGCTCAAGTTGGCCACCCAAGTCTGAGAAACCCTTAATTACTGAGAATCAAAAGAGCAGAATGTCTGTAGACATTTTGGATTTGTAAAAATCACATTGTTGAGTTATACCTGTGATGGGCTGAAAGTTTTTGGCATTCTTTCCTGTTCTTCATATGCCAGTACCATAAACAAAAAGTATCTCAGATCTGTCACTTTCTTCTCCTAAACCAATGTGATGGCAGCTTTTTGCCTTCAGCCTTTTCCCTATCCAGTATCTCCTACATAGTTACCTTTTGATCTTAAGGAACTGTTTTGATTGGGTCACTTCCTTGCCTAAAATTCCATTGATTGTTCATTGTTAATTCTAAAATAGAGTTCAAATTTAAAGGCATGTAAGTTCCCCTGTAACGGATTTCCTCTACTCCCCCTTCCGCTGTAATCTCCCATTTTTTTACTGAAATGCTTCAGTGAGCATGGGTCTTTAGAGGTCTTGATATACAATTTTCCTGAAGCAGGAATACCTTGCTTTCCTCTACTAGTTTACCACAATTACAGCTCTCTTTTAAGCCTCAGAAAAAAATCTCACTTCCGTCTTGAAGTCTTAATCCACGCTTTTTATATCCATGTGCCTACTCCTTCTCTGAAATCTCCTATGGTTTATCTTTTTATTCATTTAATATCCCACGAATTGATTTTATTATATATTTTTTATGGTTGCATGTGGTCTTTCTAGTTATAGCAatatacacatacatgcataaatacatatacacctaTGTAAATGTGTGTTGGGAGTATGTATTCACACACATACATATACCCCAAGGCCATGTGTCATCTTTATCAATATTTAAGTTTTGGAATTGTTTTGTTTGCCTCCTATATCATGGAATAAATGGTAAAGAGGGCTAATTTATTACTCTAAGTGGATTTCTTATTACATTAATATCAGACATATAGAATGTACTTTGTTTTACTATTTGTAAGATACAAAGGTATATAAACTGACATACATCAGCTTGAAACCTGAGATAATGCTAAAATGTTCTAATTATTTTAAATGTTTAAAGAGGACAACCATGTAATGTTGCTAAACATGAAAAATGTCATCAAGTGGAATAAAGAATAGCTGAAGTTAACATTTGGGGGAAATTGAGCTGAAAACAAAAATATGAGTATTTTGATACCTTTTCTTTACCATGAGACTCTTGACTATGAAGTCAAATTTATCTAAAGGAAAAACAGGAATTCTGGAGACCTGTGTAAAAGCAGACTATTATCTTCCTACTGTGAGAGTACTAAAATTAAAATACGTTTAATGACGTTTTCCTCAATGTAAAAGCATTGAAGTAAATGTTTCTTTTATGTTGCAGATACATAGTTGCTCTAGAGATCACCTTTTTCTTTATGCATTGTGAATAGCAGTCTGCATCCTAAGTTTAAAATATTTGAGAATCCTCTATGGGACTCTCTGTAAATGTTTTAAATACTGTTGTTTTCAATAAATATTTTATACTATC

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