Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name CBLL1P1
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr11). Each line represents a retrocopy.
Species Microcebus murinus
Coordinates chrX:108628899-108629277  UCSC
Strand +
Parental Sequence XM_012746097.2
Parental seq. overlap 316 bp
Parental seq. overlap (%) 6.1%
Genomic Region Intergenic
Retrocopy Summary CBLL1P1, located on chrX:108628899-108629277, is a retrocopy of the parental gene CBLL1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name CBLL1
Full Name N/A
Also known as -
Coordinate chr11:40373679-40392805
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens CBLL1P2
Chimpanzee Pan troglodytes CBLL1P2
Bonobo Pan paniscus CBLL1P2
Gorilla Gorilla gorilla CBLL1P2
Orangutan Pongo abelii CBLL1P1
Gibbon Nomascus leucogenys CBLL1P2
Green monkey Chlorocebus sabaeus CBLL1P1
Crab-eating macaque Macaca fascicularis CBLL1P2
Rhesus Macaca mulatta CBLL1P2
Baboon Papio anubis CBLL1P1
Golden snub-nosed monkey Rhinopithecus roxellana CBLL1P2
Marmoset Callithrix jacchus CBLL1P3
Pig Sus scrofa CBLL1P1
Horse Equus caballus CBLL1P1
Dog Canis familiaris CBLL1P1
Panda Ailuropoda melanoleuca CBLL1P1
Pale spear-nosed bat Phyllostomus discolor CBLL1P1
Greater horseshoe bat Rhinolophus ferrumequinum CBLL1P1
Egyptian rousette Rousettus aegyptiacus CBLL1P2
Sloth Choloepus didactylus CBLL1P5
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Cat Felis catus Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>CBLL1P1
GGGGACTTTAAGATAAACATCATAGGCGAAAAGGTTGATTCACCAGTTCATTTCTGTGGCATATGTGATTTGCCTATTAAAATCTATGGACGAATAATTCCATGCAAGCATGCTTTTTGCTATTACGGTGCTAATTCATATGAAAAACATGGAGATAAGATACGTCCAGGCTGTAGTAATCCTGTCCTGCAAATTGAGGAGCATACACGAGGTTCTGTCTTCATGTGTGGCACTGTTCAGGGATGCAAGAGAATGtacttgtctgagaaagacttacAAGCTCATATCAACCACTGCTATGAGACAGCTGGAAAACTTGTTACCTGGGCTTCACTTGAAGAAGTTTATCCTTGTATTGCTTCACCACTACCTGAAATCC
>XM_012746097.2
TCCGCCCGCCGGGGTGGGGCCAGCGCAACGGCCGAGCCTGCGCAGTTGGGCCTGGCTGGCTCCAGGGCGCCGGCGCACTACAAGTCCCAGAAGGCATCGCTCCGCGGGGCCGGCGGCCCTTACCTGCCGGGAGCTTATTCCTTTGGCTTCCACCGCTCTCCCCCTCCCGTGTCCTTTCCACTGTTAAAAGCTACTTTCTCTTGAAGCACATGAGAAGCCTCAGCAACCTTAACGGTGAAGCTCTTCGCGTACTCGCTCTTTCTGCTTTTGCCCGAACTATGCCTGACTCCCTTACTGGAGTGGGAAAGTGGAGGCGAAAGGAGGAAGTCTTTGCAGGCCTAGGCTGGGGCGACCTGGTCGCATTTCCGCCTCCCGGGCTCCGGAAGGTAGCGCGCACGCGCTTGCTGCGACTCCGGCGCGGTTGACTTCCGCTCCCACTGTGCTCTGCGAGCCGAATCATGGATCACACTGACAATGAGTTACAAGGCACTAATAGTTCTGGATCCTTGGGTGGTCTTGATGTTCGCAGACGAATTCCTATAAAGCTCATCTCCAAACAAGCTAACAAAGCCAAACCTGCACCTCGAACTCAAAGGACTATAAACAGGATGCCTGCAAAGGCTCCACCTGGTGATGAAgaaggATTTGATTATAATGAAGAAGAACGGTATGACTGTAAAGGGGGCGAACTGTTTGGAAATCAGCGAAGATTTCCTGGACACCTTTTTTGGGACTTTCAGATTAACATCTTAGGTGAAAAAGATGATACCCCAGTTCACTTCTGTGACAAATGTGGATTGCCTATTAAAATCTATGGGCGAATGATTCCATGCAAGCATGTTTTTTGCTATGATTGTgctattttacatgaaaaaaaaggagataaaatgtgTCCAGGcTGTAGTGATCCTGTGCAGCGAATTGAGCAGTGTACACGAGGTTCTCTCTTCATGTGTAGCATTGTTCAAGGGTGCAAGAGAACATATTTGTCTCAGAGAGACTTACAGGCTCATATCAACCATCGCCATATGAGAGCTGAAAAACCTGTTACCTGTGCTTCGCTTGAAAATGTTCATCCTCCTATTGCCCCACCACCAACTGAAATCCCTGATCGTTTTATAATGCCACCAGACAAGCATCATATGAGCCATATTCCGCCAAAGCAGCACATCATGATGCCACCACCTCCTTTGCAACATGTGCCACATGAGCACTATAATCAGCCACATGAGGATATTCGTGCTCCTCCAGCAGAATTGTCTATGGCTCCACCTCCACCTCGTTCGGTCAGTCAGGAAACCTTTCGTATTTCAACAAGAAAACACAGCAATTTAATAACTGTCCCTATTCAGGATGACTCAAATTCAGGTGCTAGAGAAccaccacctcctgccccagcacCTGCTCACCATCATCCTGAATATCAGGGCCAACCAGTGGTATCGCACCCTCATCATATTATGCCTCCACAGCAACATTATgcaccacccccacctcctccaccaccaATAAGCCATCCAATGCCACATCCTCCCCAGGCTGCAGGTACTCCTCACTTGGTATATAGCCAAGCTCCACCTCCACCAATGACCTCTGCTCCACCACCAATAACCCCTCCCCCTGGACATATTATTGCCCAGATGCCACCTTATATGAATCATCCTCCTCCAGGACCTCCCCCACCTCAACATGGTGGTCCACCTGTAACTGCACCCCCTCCTCACCATTATAATCCTAACTCTTTACCCCAGTTCACTGAAGATCAAGGAACTCTGAGCCCTCCATTTACACAACCAGGGGGAATGAGTCCTGGTATATGGCCCGTACCAAGagggccacctcctcctccacgaATGCAGGGTCCGCCTTCTCAAACCCCACTTCCTGGACCACATCATCCAGATCAGACAAGATATAGACCGTATTACCAATGATAATAGTGTTTTGAACTGAAGatatgatgaggaaaaaaaacttATGTATAGTCAATCTTTTAATTAAGCTTTGACTTTTGGGAAGGAAAAGTACCTCTTACTGAGGTGGCTATAAAACACATAGGGTCTTGTctcttaaaatgcttttaaatcttGACTTTAGGATTGATTTCAAGTACTAtactatagtgcagattaagtggCTCAGTTGAGCACAGCTATATTTTAACACCTTTGTTCCCCTAGTGTGGTAAATTGACCCAGAGGTGACCATttgtaaaaaatttgaaaaaaattttcattgttcCACTTTCAAAAGTATTGCTTTTGTTAAACCCAATGTTTAGTTTTTCTTGTGATACATTTTGTTAACCTGTGTAAAaggattaaatttcaatatggttgtaaaaatgctatttttatgtgaatttaagTGCAGCcacatactgttttttaaaaccatatgttTTACCACTAATTTCCCAAAGTTACAATAAAATCCTAAAAGTAAAAATCTACTAGAATTTGCTATAAGGCAGACTGTTAAATGATAGAGAACTATTTCACATTTTAGGCACTGAAATTTTGAGGTCTAGTAAGTATCTAATGCACTTCACTTGGATGCCTTTTCATTTTTAGGCAGCCTCAGGAGCACCAAAATATATTGGATTCTAGTACTGAGATATGTTTGTAATATTAAAAGGCATTACTAATTATTTGGAAAGATACGGCCAAAGTAATCAATTCTACAGGCTTCAAGCTGGTGGAGGATGCTGTTACTCATTAATGCTTTTTTACTGAATGGTTGGAATCACATGATGCACCATACATATTAAGCTTAAGTAACATTATTTTGTAGAACTGTTTAAATGGTGTTATTTAGATGAAATGTGTTCTGTTCATTGTCTTAAACTAAATATTTAGGGCTGAATAGGCTTTATGTAATTCCTCATTTCATGGTAGAATTTGATCCTGTGTTTAAGTGGCTCttgtttattgaattttaaactaCAGTTTGATGCCATGGAGGAATTTGAATAATGTATTAATGAAGGACATATTCTGTAATCACAAACTTCCATTTACTCAGGTTTCATTGCTGTGTGATGAGATTTTTCCTCTAACTTGAAATTTAAAAGCTATTATTTCCTATTCCTTTTGTTGGTAAAATAATCTGAACTTGGAACATTTTAGTAGAGAGACAACGGCAAAGACTACCAGATAATTTTGTATTGGACAAGAGAAAAGCAATGGCTAAATTCTGAATTTCAGTGCTTTATACGGTGCCTTTCGAGTCAGCTTTTGCATTATAGGGGCTTGTTACAGTCCAACTAAGATGACCACTTACAATTTATACAGAACTCATGTATAAATCAACCTTCTTAGGATATTATTCTATATCCTTTGAATTAATCCCTGTGAAGTTTTTCCTCCCCCCTAAAATGGTGCataatataaacatgaaatgtGTAGTATGCAGATATCATTTATTAGATAGATTGTAGTGTATAAATTTAGAACATCTTTTTGACAAAGGGTGAACTGATTGCTAATTAACCATTTTATTCTGTCAGGTACAGGCAAAACAAATTCCCATCTTGGATGATCAGATGCAAATCATTTCTGAACTTAGAGCAGAagttagaaataatataaatggcCATTTCAACCTTGACTGGCCGAAAATAactaatatacttttttcttttaagcaagTGACTTTTTTTacacttattttgaaaaagttccGTGTTAATGCAATTTTTCTAGTGAGAAATGCTTGTTATTAAAAGCATGGGAGTGAAATAGTGTGAAATGTTGGTGGTGAGTGCATCTATCATATTACTGTAGGTACTTGGACTGGTACAAACTTGATTCCTTTTCAAGCCCCTGTTtaggagcttttaaaatattactgataaAAATCCAAGCCATTGTTTCATgtaataagaaaataaccaaattCACTTTCAAGCTTCTCAACTATTTATGAAGAGCTCTCATGCTTTTACTGAAATTCACTAGAGTTGAATGTGGTAAGAAACCACTTAGCCTATGTATTGGACAAAAAAAGTCAGTATCATGATAAACTTTCATGTTAGGAGAAAtcttttaggcttttaaaaaatgatttattttcagttagatgtaagaaatatttgttatgcAGGGAGGCAGATCAGATGAATGTCTTGTAGcagacaattttaaaatggtgTTAGACTTGAATTCATCAGTTATAATTGTTTGAatgagggtgggtggggagaaggataACAAAATTACTGTtagtgtttctttccttaaggaaAAAGATGTGAATCCCAGCCTTATTTCAGGGAAGCCTTTGAAGCTATGATGGACATAAGTCTaaattaaatgtatgtatgtttcATTATATTGCTCTTAAGACTACTGAGGTGGCAgtttaattcttaaaaacaataaaatggaagCATAAATACTATTTTGCCTAGATGAATTTTTACCTAATGATGACACTGTGAGAATGCAGAATTTTCCATATTTGAGTTAATACCACATTCTATAGTAAAATACATTcactttttttaaagattaagacCAGCAAATTGAATTGTTATATTTCTTCAGTAGCATGTTTGTTTAGAGTGTAATGTGGTATTTGGGGAAAGATCCATTGCAAAGACCGTAAGAAACTATATCCATTTTGCCCTGTAAAAACCACTTGCTCAAAATTACTGTATAATGCTAATGAGATACCtctgaaatgtaaatgaaaaagatacttgaacattttttaagcTCGTAATAAGTGGCTATTTACTGTATGACTGCTTTAGGCTTTGTTCTGACTAATATATTGGAAgagtatttttcataaattttgtggAAAAGCTCCATGGTTCCacctttcataaattttttgaaaatgccCTATTAGTACATGAAAACAATGCATGAGTACCCAAAAGACATTTCTCTATTAGGTTAGTCATCAAACTAATACACTGATGCTAAATGAAGTTTGACATAACCCACTCGTATTGTAAACATACTATATTCTGATTGAAGTGGATTTATTTATCTTCACTGGTTTGTAACTAATTTGTTCAATTATGGCCTAGAAACCAAGTTTACTTATTCAATATATGCACAACGTAATAAAGCAGTATTGGTTATACTAGGCTTCAGGTGAAGGAGTAAGCCAGGTAAAATACTTCGTAGTGATGCTAATAAAAACGGACTTGGAAGTTTGAA

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