| Retrocopy Name | CBLL1P2 |
|
| Species | Homo sapiens | |
| Coordinates (hg38) | chrX:22273106-22273488 UCSC | |
| Coordinates (T2T) | chrX:21856504-21856886 UCSC | |
| Coordinates (hg19) | chrX:22291223-22291605 UCSC | |
| Strand | + | |
| Parental Sequence | NM_024814.4 | |
| Parental seq. overlap | 321 bp | |
| Parental seq. overlap (%) | 8.1% | |
| Genomic Region |
Intergenic |
|
| Retrocopy Summary | CBLL1P2, located on chrX:22273106-22273488, is a retrocopy of the parental gene CBLL1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
| Gene Name | CBLL1 |
| Full Name | Cbl proto-oncogene like 1 |
| Also known as | HAKAI|RNF188 |
| Coordinate | chr7:107743836-107764997 |
| Strand | + |
| Gene summary | This gene encodes an E3 ubiquitin-ligase for the E-cadherin complex and mediates its ubiquitination, endocytosis, and degradation in the lysosomes. The encoded protein contains a RING-finger domain and is also thought to have a role in control of cell proliferation. A related pseudogene has been identified on chromosome X. Alternative splicing results in a non-coding transcript variant. [provided by RefSeq, Aug 2011] |
| Species | Scientific Name | Retrocopy | |
 |
Chimpanzee | Pan troglodytes | CBLL1P2 |
 |
Bonobo | Pan paniscus | CBLL1P2 |
 |
Gorilla | Gorilla gorilla | CBLL1P2 |
 |
Orangutan | Pongo abelii | CBLL1P1 |
 |
Gibbon | Nomascus leucogenys | CBLL1P2 |
 |
Green monkey | Chlorocebus sabaeus | CBLL1P1 |
 |
Crab-eating macaque | Macaca fascicularis | CBLL1P2 |
 |
Rhesus | Macaca mulatta | CBLL1P2 |
 |
Baboon | Papio anubis | CBLL1P1 |
 |
Golden snub-nosed monkey | Rhinopithecus roxellana | CBLL1P2 |
 |
Marmoset | Callithrix jacchus | CBLL1P3 |
 |
Mouse lemur | Microcebus murinus | CBLL1P1 |
 |
Pig | Sus scrofa | CBLL1P1 |
 |
Horse | Equus caballus | CBLL1P1 |
 |
Dog | Canis familiaris | CBLL1P1 |
 |
Panda | Ailuropoda melanoleuca | CBLL1P1 |
 |
Pale spear-nosed bat | Phyllostomus discolor | CBLL1P1 |
 |
Greater horseshoe bat | Rhinolophus ferrumequinum | CBLL1P1 |
 |
Egyptian rousette | Rousettus aegyptiacus | CBLL1P2 |
 |
Sloth | Choloepus didactylus | CBLL1P5 |
 |
Mouse | Mus musculus | Without Homology |
 |
Rat | Rattus norvegicus | Without Homology |
 |
Chinese hamster | Cricetulus griseus | Without Homology |
 |
Rabbit | Oryctolagus cuniculus | Without Homology |
 |
Cow | Bos taurus | Without Homology |
 |
Sheep | Ovis aries | Without Homology |
 |
Dolphin | Tursiops truncatus | Without Homology |
 |
Cat | Felis catus | Without Homology |
 |
Velvety free-tailed bat | Molossus molossus | Without Homology |
 |
Greater mouse-eared bat | Myotis myotis | Without Homology |
 |
Kuhl's pipistrelle | Pipistrellus kuhlii | Without Homology |
 |
Tasmanian Devil | Sarcophilus harrisii | Without Homology |
 |
Opossum | Monodelphis domestica | Without Homology |
 |
Platypus | Ornithorhynchus anatinus | Without Homology |
 |
Chicken | Gallus gallus | Without Homology |
 |
Turkey | Meleagris gallopavo | Without Homology |
 |
Zebra Finch | Taeniopygia guttata | Without Homology |
 |
Budgerigar | Melopsittacus undulatus | Without Homology |
 |
Painted Turtle | Chrysemys picta | Without Homology |
 |
Lizard | Anolis Carolinensis | Without Homology |
 |
Frog | Xenopus tropicalis | Without Homology |
 |
Zebrafish | Danio rerio | Without Homology |
 |
Drosophila | Drosophila melanogaster | Without Homology |
| >CBLL1P2 |
| GGGGACATTAAGATAAACATCATAGGTGAAAAGGATGATTTACCAATTCATTTCTGTGACAAATGTGATTTGCCTATTAAAATCTATGGGCGAATAATTCCGTGCAAGCATGCTTTTTGCTATCACTGTGCTAATTTATATGACAAAGTCGGATATAAAGTATGTCCGCGCTGTCGTTATCCTGTGCTGAGAATTGAGGCGCATAAACGAGGTTCTGTCTTCATGTGTAGTATTGTTCAGCAGTGCAAGAGAACATACTTGTCTCAGAAAAGCTTACAGGCTCATATCAAACGCCGCCATAAGAGAGCTCGAAAACAAGTTACCAGCGCTTCGCTTGAAAAAGTTCGTCCTCATATTGCTCCGCCACAAACTGAAATCTCTGA |
| >NM_024814.4 |
| ACTGTGCTCTGCGAGCCGAATCATGGATCACACTGACAATGAGTTACAAGGCACTAATAGTTCTGGATCCTTGGGTGGTCTTGATGTTCGCAGACGAATTCCTATAAAGCTCATCTCCAAACAAGCAAACAAAGCGAAACCTGCACCGCGAACTCAAAGAACTATAAACAGGATGCCTGCAAAGGCTCCACCTGGTGATGAAGAAGGATTTGATTATAATGAAGAAGAACGGTATGACTGTAAAGGGGGTGAGCTGTTTGCAAATCAGCGAAGATTTCCTGGACACCTTTTTTGGGACTTTCAGATAAACATCTTAGGTGAAAAGGATGATACACCAGTTCATTTCTGTGACAAGTGTGGATTGCCTATTAAAATCTATGGGAGAATGATTCCATGCAAGCATGTTTTTTGCTATGACTGTGCTATTTTACATGAAAAAAAGGGAGATAAGATGTGTCCAGGCTGTAGTGATCCTGTGCAGCGAATTGAGCAGTGTACACGAGGTTCTCTCTTCATGTGTAGCATTGTTCAAGGGTGCAAGAGAACATATTTGTCTCAGAGAGACTTACAGGCTCATATCAACCATCGCCATATGAGAGCTGGAAAACCTGTTACCCGTGCTTCACTTGAAAATGTTCATCCTCCTATTGCCCCACCACCAACTGAAATCCCTGAGCGTTTTATAATGCCACCAGACAAGCACCATATGAGCCATATTCCGCCAAAGCAGCACATCATGATGCCACCACCTCCTTTGCAACATGTGCCACATGAGCACTATAATCAGCCACATGAGGATATTCGTGCTCCTCCAGCAGAATTGTCCATGGCTCCACCTCCACCTCGATCGGTCAGTCAGGAAACCTTTCGTATTTCAACAAGAAAACACAGCAATTTAATAACCGTCCCTATTCAGGATGACTCAAATTCAGGTGCTAGAGAACCACCACCTCCTGCCCCAGCACCTGCTCACCATCATCCTGAATATCAGGGTCAACCAGTGGTATCGCACCCTCATCATATTATGCCTCCACAGCAACATTATGcaccacccccacctcctccaccaccaATAAGCCATCCAATGCCACATCCTCCCCAGGCTGCAGGTACTCCTCACTTGGTATATAGCCAAGCTCCACCTCCACCAATGACCTCTGCTCCACCACCAATAACCCCTCCCCCTGGACATATTATTGCCCAGATGCCACCTTATATGAATCATCCTCCTCCAGGACCTCCCCCACCTCAACATGGTGGTCCACCTGTAACTGCACCCCCTCCTCACCATTATAATCCTAACTCATTACCCCAGTTCACTGAAGATCAAGGAACTCTGAGCCCTCCATTTACACAACCAGGGGGAATGAGTCCTGGTATATGGCCTGCACCAAGAGGGCCACCACCACCTCCACGATTGCAGGGTCCGCCTTCTCAAACCCCACTTCCTGGACCACATCATCCAGATCAGACAAGATATAGACCGTATTACCAATGATAATAGTATTTTGAATGGAAGATATGAGGGGGAAAAAAACTTATGTGTAGTCAATCTTTTAAGCTTTGACTGTTTTGGGAAGGAAGAGTACCTCTTATCGAGGTAGTATAAAACACATAGGGTCTTGTTTCTTAAAATGGTTTTAAATCTTGACCTTAAGATTGATTTCAAGTACCATACTGTAGTACAGATAAGTGGCTCAGTTGAGCACAGCTATATTTTAACATCTCTTTGTTCCCCTAGTTTAGTAAATTGACCCAGAGGTGACCATTTGTAAAAAATTTGAAAAAATTTTTCATTGTTTTACTTCAAAAGTATTGTTTTGTTAAACCCAACGTTTAGTTTTTCTTGTGATACATTTTGTTAACCTGTGTAAAAGGATTAAATTTCAATATGGTTGTAAAAATGCTATTTTTATGTGAATTTAAGTGCAGCCACATACTGTTTTTTAAACCATATGTTTTACCACTAATTTCCCAAAGTTATAATAAAATCCTGAAAGTAAAAATCTACTAGAATTTGCTGTAAGGCAGACTGTTAAATGATAGAGAATTATTTCACATTTTAGGCACTGAAATGTTGAGGTTTCGAGGTATAGTAAGTATACAATGCACTTCACTTGGATGCCTTTTCATTTTTAGGCAGCCTCAGGAGCACCAAAATACATTGGAATTCTAGTACTAAGATATATTTGTTCGTAATGTTAAAAGACATTACTAATTATTTGGAAAGAGATGGCCAAAATAATCAACTCTACAGGCTTCAAGCTGGTGGGGGAATGCTGTTACTCATTAATGCTTTTTTACTGAATGGTCGGAATCACATATGCACCACACATACTGATCTTAAGTAACATTATTTTATAGAACTGTTTAAATGGGTTTAAATGGTGTTCTTTAGATGAAATGTGTTCTGTTTTGTTCATTGTCTTAAACTGAATAGGGCTGAATAGGCTTTATGTAATTCTTCATTTCATGGTAGAGTTTGATGCTGTGTTTAAGTGGGTTCTTGTTTATAGGATTTTCAACTACAGTTTGAATGCCATGGAGGAATTTGAATAATATATTAATGAAGGACATATTCTTGTAATCACAAATTTGCATTTGCTCAGGTTTCATTGCTGTGTGATAGGATTTTTCCTCTAACTTGAAATTTAAAAACTTTTATTTCCTATTCCTTTTGTCGGTAAAGCAGTCTGAATTTGGAACATTTTATCATGGAGTCAACAGTGAAGACTACCAGATAATTTTGTATTGGAGAAGAGGAAATAACAGCTAAATTGTGGATTTCAGTGCTTTACATGGTGCCTTTCGAGTCAGCTTTTACATTATAGGGGCTTGTTATAGTTTAGCTAAGATGACCACTTAACAGTTTATACAGAACTCATATGTATAAATCAACATTCTTAGGATATTATTTATATCCTTTGAATAAATCCCTGTGAAGTTTTTCCTCCCCACTAAAATGGTGCATAATAAAACATGAAATATGTAGTATGCAGATATCATTTATTAGATAGTTTGTAGTGTATACATTTAGAACATACTTCTTTTGACAAAGGGTGATCTGATTGCTAATTTACCATTTTATTCTGTCAGGTACAGGTGAAACAAATTCTCATCTTGAATGATCAGATGCAAAATCATTTCTGAACCCTAGAGCAGAAGTTAGAAATAACAAAATGGCCGTTTCAACCTTGACTGGCCAAAAATAACTAATAAACTTTTTTGTTTTAAGTCAGGCAAGTGATTTTCTACATTTAGCAGTTTGAAAGTCCAGTGTTAATGCAATATTTCTAGTGAGAAATGCTTGTTATTAAAAGCATGGGAGTGATAGTGTGAAATGGTGGTGAGTGCTTCTATCATATTACTGTAGGTACTTGGACTGGTGCAAACTTGATTCCTTTTCATCCCCCTGTTTAGGAGCTATTAAAATATTACTGTTAAAAATCCAAACCATTCTTTGTTCCATGTAATAAGAAAATAGCCAAAATCACTTTAGAGCTTCTCAACTATTTATGAAGAGCTATCCTGCTTTTATTGAAAGTCACTAGAGTTGAATGTGGTAAGAAACCACTTAGCCTATGTATTGGACGAGAAAATCAGTATCATGATAAAATTTTGAATTAAGAGAACCCTTGTAGAGTTTTTAAAAAATGATTTATTTTCAATTAGGTTTAAGAAATCTATGTTATGCAGGGAGGCATATCAGATGAATGTTGTAGCAGACAAAAGTTTTAAATCGTGTTAGACTTGAATTCATCAATTGTTTGAATGAGGGTGGGTGGGTAGAAGGATAACAAAATTACTGTTAGTGTTTCTTTCCTTACGGAAAAAGATGTGAATCCCAGCCTTATTTCAGGGAAGCCTTTGAAGCTATGATGGACATAAGTCTAAATTAAATGTATGTATGTTTCATTATATTGCTCTTAAGACTACTGAGGTGGCAGTTTAATTCTTAAAAACAATAAAATGGAAGCATAAATACTA |
| PMID - Link | Title |
|---|