Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC105863290P4
Plot displaying the genomic locations of a retrocopy (in chr13) and its respective parental gene (in NW_017968531). Each line represents a retrocopy.
Species Microcebus murinus
Coordinates chr13:84844375-84845461  UCSC
Strand +
Parental Sequence XM_020285367.1
Parental seq. overlap 873 bp
Parental seq. overlap (%) 55.9%
Genomic Region Intragenic (LOC105878811)
Retrocopy Summary LOC105863290P4, located on chr13:84844375-84845461, is a retrocopy of the parental gene LOC105863290. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC105863290
Full Name N/A
Also known as -
Coordinate NW_017968531:126993-142659
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens ZNF66P3
Chimpanzee Pan troglodytes LOC100611724P6
Bonobo Pan paniscus LOC100972001P1
Gorilla Gorilla gorilla ZNF66P4
Orangutan Pongo abelii LOC100451404P1
Gibbon Nomascus leucogenys ZNF253P6
Green monkey Chlorocebus sabaeus ZNF721P5
Crab-eating macaque Macaca fascicularis LOC102128845P3
Baboon Papio anubis LOC103880007P2
Golden snub-nosed monkey Rhinopithecus roxellana LOC104671909P3
Rhesus Macaca mulatta Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC105863290P4
GTTACTGAACGTAAGAGAAtttataatggaaagaaatgttacaaatgtgaagaatgtggcaaagtctTTAATCAGTGCTCATACCTtactaaacataaaagaattcatactggagagaaaccctacaaatgtgaaaaatgtggcaaagcctttaatcAGTGCTCATACCTTACCAAACatgagagaattcatactggagagaaaccttacaaatgtgaagaatgtggcaaagcctttaatcAGTGCTCATACCTTACCAAACAtgagagaattcacactggagagaaaccttacaaatgtgaagaatgtggcaaagcttttaaCCGGTGCTCACACCTTACTATACATAAGCGAATTCATACCAgagaaaaaccctatgaatgtgaagaatgtggcaaagcctttaatcAATGTTCATACCTtactaaacataaaagaattcatatcggggagaaaccctacaaatgtgaagaatgtggcaaagcctttcaCTGGTACTCAGACCTTTCtgtacataaaagaattcatacaggagaaaaaccctacaaatgtgaagaatgtggcaaagcctttaatcAGTTCTCATATCTTACTAagcataagagaattcatactggagagaaaccctacaaatgtgatgaatgtggcaaagcctttcaTTGGTACTCAGACCTCTCTgtacataagagaattcatacaggagagaaaccctacaaatgtgaccAATGTGGTAAAGCCTTTAATACATGCTCATACCTtactaaacataaaagaattcatacaggagagaaaccctacaaatgtgaacaGTGTGGCACAGCCTTTAACCAATGCTCATACCTTACTGCACATAAAATAGTTCATACAGGAGATAAACCCTACAAATGTggagaatgtggcaaagcctttagcCAGTGCTCATACCTTACTgcacataaaagaattcatactggagagaaaccctataaatgcgaagaatgtggcaaagcttttaaTTGGTGCTCAGATCTTACTATGCATAAGAGAATTCATGCCAGAGAAAAATCCTAAGaataaagaatgtggcaaagcctctAACTGGTTCTCA
>XM_020285367.1
ATGGTGACATTCAGGGATGTGGCTGTAGAATTCTCTCCAGAGGAGTGGGCATGCCTTGACAATGCTCAGCAGAATTTGTATAGGGATGTGATGTTAGAGAACTACAGAAACCTGGTCTCCCTTGgtCTTGTTGTCTCAAAACCAGAGCTGATCACATGTCTGGAGCAAAGCATAGAGCCCTGGattatgaagaaagaggaaacaacaGCCAAATATCCAGaACTCTCTTCCCATTGCAACAAAGACCTGTTGCCTGAGCAGGGTATAAAAGACCCCTTTCAGAAATCAATAATGAGATTATATGGAAGAAATGGCCTTGAAAATATACACTTAAGAAGAGACTGGGAGTGTGTGGGTGAGTATAAGAGGCAGAAAGCATGTTATGATGGTCTTACCCAATGTTTGTCAACTTGCCACAGAAAATTATTCAAatgttataaatgtataaatgtctTTAGCAAATCATCAAATCTAAATAGACACAAGNNNNtccatactggagagaaaccctacaaatgtaaagaatgtggcaaagcttttacCCGCTGCACACACCTTACTcgacataaaagaattcatactggagagaaaccctacaaatgtgaaatatgtggcaaagcctttaaccaGTCCTCAGTCCTTACTTGACATAaaagaatccatactggagaaaaaccctacaaatgtgaagaatgtggcaaggCCTTTAGCCTGTGCACAAACCTTACTCGACATAAAacaatccatactggagagaaacCCTACAAgtgtgaagaatgtggaaaacCCTTTAACTGTTGCTCAAAACTTATTATACATaggagaattcacactggagagaaaccctacaaatgtgaagaatgtggcaaagcctttacccagtGCATacaccttactcaacataaaagaatccatactggagagaaaccctacaaatgtgaagaatgtgacaAAGCCTTTAACCAGTTCTCAATCCTTAgtcaacataaaagaattcatactggcgagaaaccctacaaatgtgaagaatgtggcaaagcctttaactgGTCCTCAACCCTTActctacataaaagaattcatactggagagaaaccctacaaatgtgaagaatgtggcaaagcctttaatcAGTCCTCAATCCTTACTCGacataaaaaaattcatactggagagaaaccctacaaatgtgaagaatgtgacaAAGCCTTTGCTGAGTCCTCAacccttactcaacataaaagaatccatactggagagaaacattacaaatgtgaagaatgtggcaaagcctttactcAGTGTTCAggccttactcaacataaaagaattcatactggagagaaaccctacaaatgtgaagaatgtggcaaagcctttaaccgGTCCTCAatccttactcaacataaaataattcatactggagagaaaccctacaaatgtgaagaatgtggcaaagcctttacccagtGGTCAagccttactcaacataaaagaattcatactggaggtAAACCCTAA

Publications

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