Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC103880007P2
Plot displaying the genomic locations of a retrocopy (in chr4) and its respective parental gene (in chr20). Each line represents a retrocopy.
Species Papio anubis
Coordinates chr4:126483536-126484844  UCSC
Strand -
Parental Sequence XM_031660345.1
Parental seq. overlap 1027 bp
Parental seq. overlap (%) 49.4%
Genomic Region Intragenic (LOC101016147)
Retrocopy Summary LOC103880007P2, located on chr4:126483536-126484844, is a retrocopy of the parental gene LOC103880007. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC103880007
Full Name N/A
Also known as -
Coordinate chr20:31072424-31108490
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens ZNF66P3
Chimpanzee Pan troglodytes LOC100611724P6
Bonobo Pan paniscus LOC100972001P1
Gorilla Gorilla gorilla ZNF66P7
Orangutan Pongo abelii LOC100446243P6
Gibbon Nomascus leucogenys LOC100585566P4
Green monkey Chlorocebus sabaeus LOC103226004P5
Crab-eating macaque Macaca fascicularis ZNF195P5
Rhesus Macaca mulatta ZNF195P6
Golden snub-nosed monkey Rhinopithecus roxellana LOC104671909P3
Marmoset Callithrix jacchus LOC100400163P4
Mouse lemur Microcebus murinus LOC105863290P4
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC103880007P2
ccagttgTGTGTTCTCATTTTGCCCAAGACCTTTGGCCAAAGCAGGGCttaaaagattcttttcaaaaagtGATCCTGAGAAGATATGGAAAATATGGACATGAAAATTTACAATTAAGAAAAGACTGTAAAAGTGTGCATGAGCATAAGGTGCACAAAAGAGGTTATAATGGACTTAACCAATGTTTGACAACTACCCAgagcaaaatatttcaatgtgaTAAATGTGTTAAAGTTCTTCATAAATTCTCAAATTCAAGTAGACACAAGAAAAGACATACTGGAAGGAAACCtttcaaatgtaaagaatgtggcacATCATGTTGCATACTTTCACAACTAACTCAGCATAAGAAAACTGCTACTAGAGGGAATTTCTACAAATGTAAAACATGTGGAAAAGCCTTTAACCAGTTCTCAAAtcttactaaacataagataattcatactgaaGTGAatccctacaaatgtgaagaatgtggcaaagcctttaaccaGTCCTTAACtcttactaaacataaaaaaattcatactgaagagaaaccttacaaatgtgaagattGTGGCAAAGTCTTTAGTGTATTTTCAATccttactaaacataagataattcatacagGAACAAAACCCTACAattgtgaagaatgtggcaaaggctTTAGTATATTCTCAAcccttactaaacataagataattcatactggagagaagccctacAAATGCAACGAATGTGGTAAAGCCTTTAACTGGTCCTCAACTCTTActaaacataagagaattcatactggagagaaaccctacaaatgcaATGAATGTGGTAAAGCCTTTAACCAGTCCTCAACCCTTACTAGACATAAGAtagttcatactggagagaaaccctacaaatgtgaagaatgtggtaaAGCCTTTAAACGGTCCACAACTCTTACTAAACATAAGAGAATTTATACTaaagagaaaccatacaaatgtgaagaatgtggaaaagcctttagTGTATTCTCAAcccttactaaacataagataattcatactggagcaaaaccctacaaatgtgaagaatgtggcagcGCCTTTAGGGCATTCTCAACCCTTACTGAACATAAGagagttcatactggagagaaaccttacaaatgtaatgaatgtggcagaGCCTTTAACTGGTCCTCAACTCTTActaaacataagagaattcatactggagagaaaccctacaaatgtgaagaatgtggcaaagcttttaaccggTCCTCAAACCTTACCcgacataagaaaattcatactggacaGAAACCATACAAAC
>XM_031660345.1
TAGCAAAATAAGTTTGCCTCCAATCTATTTTCTTCAtatcttattttcatttgtgaatGGACGTATagcatattatttataaatttatataaccTTATACACAAGATTAAAGGCAAATACCTCTGGGGGTGGGCCTGGCTCCGCTCAGGGAGGAAGCCCTGCCTGAAAAGGCTGCAAGTCTAGGCCGTCACTCTTTCTTCATTCAGCCCAGCGTCTAATCACATCTTCTGTCAATCAGGGCCTGAAGGGACGGGTCTTAAACGTCATCCAATCAGGGACGCTGGGCTAGAAACCGTCCAATCAGGCACGCAGCTGGAGCGGAAAGGGCGGCTTCCGGGATATGGCGGGGCTTTTGTCTCTCGCTGCACCCAGAGCTCCAGATCTCGTCGTCACTGCTCTGTGTCCTCTGCTCCTAGAGGCCCAGCCTCTGTGGCCCTGTGACCTGCAGGTATTTGGAGATCCACTGCTAAGACGCCAGGACCCCCCGGAAGCCTAGAAATGCCATCATTGACATTTATGGATGTGGCCATAGAATTCTCTCTGGAGGAGTGGCAATGCCTGGACACTGCACAgcaaaatttatatagaaatgtgaTGTTAGAGAACTACAGAAACCTGGTCTTCCTGGGTATTGTTGCCTCTAAGCCAGACCTAATTACctgtctggaaaaagaaaaagagccctGGAATATGAAGCAACATGAGATAGTGGATGAACCCCCAGttaTGCGTTCTCATTTTGTTGAAGAACTTTGGCCAGAGCAAAACATAAAAGATTCTTTCCAAAAAATGATACTGAGGAGATACAATAAATGTGGACATAAGAACTTACAATTAAATAAAGGCTGTAGAAGTGTGAATGAGTGTAAGCTGCACAAAGGAGGTTATAATGGACTTAATCAATGTTTCACAACTACCCAgagcaaaatatttcaatgttatacatatataaaagtgtttcatatattttcaaattcaaatagaCCTAAAATAAGACATACTGGAAAGAAACctttcaaatgtaaaaaatgtgGCAAATCATTTTGCATGCTCTCTCAACTAACTCAAAAtgaaagaattcatactggaaagaaactctacaaatgtgaagaatgtggcaaagcctttaactgGCCCTCAATCCTTAGTCAACATGAGAGAATTCATACCGGAGAGAAACActataaatgtgaagaatgtggcaaaacaTTTAAGCAGTCCTCAAGCCTTACTAGACagaagagaattcatactggagaggagtactacaaatgtgaaaaatgtggcaaagccttcaaCCAGTCTTCCATCCTTACTAtgcataagataattcatactggagagaaaccctacaaatgtgaagaatgtggcaaagccttcaaCCAGCCTTCAAACCTTATTAtgcataagagaattcatactggagagaaaccctacaaatgtgaagaatgtggcaaagccttcaaCCAGTCTTCAAACCTTGtgcataagataattcatactggagagaaaccctacaaatgtgagaAGAATgaaaccctacaaatgtaagAAGAATGTATAGAAGCCTTCAACCAGTCTTCAAACCTTACTGtgcataagataattcatactggagagaaaccctacaaatgtgaagaatgtggcaaagcattTAAGCAGTCTTCAAACCTTACTGtgcataagataattcatactggagagaaaccctacaaatgtgaagaatgtggcaaaacaTTTAAGCAGTCCTCAAGCCTTACTagacataagagaattcatagagagaaaccctacaaatgccAAAGGGAATGTGGCAAAGCTTTTAACCAATTCTCAACCTTTActaaacataagataattcatactggagagaaaccatacaaatgtgttaaatgtggcaaagcctttaaccaGTCCTTGACTTTTACTAAAAATGAGAATTCATGTGAAAAATAAACCctactaggccgggcgcggtggctcaagcctgtaatcccagcacttt

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