Retrocopy Name | Nup54P1 |
|
Species | Mus musculus | |
Coordinates | chr1:129723681-129725705 UCSC | |
Strand | - | |
Parental Sequence | NM_183392.2 | |
Parental seq. overlap | 1932 bp | |
Parental seq. overlap (%) | 82.8% | |
Genomic Region |
Intragenic (Thsd7b) |
|
Retrocopy Summary | Nup54P1, located on chr1:129723681-129725705, is a retrocopy of the parental gene Nup54. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
Gene Name | Nup54 |
Full Name | nucleoporin 54 |
Also known as | 3110079L04Rik|54kDa |
Coordinate | chr5:92563399-92583109 |
Strand | - |
Gene summary | Predicted to enable identical protein binding activity. Predicted to be a structural constituent of nuclear pore. Predicted to be involved in several processes, including nuclear pore organization; protein localization to nucleus; and regulation of protein import into nucleus. Predicted to act upstream of or within mRNA transport and protein transport. Predicted to be located in nuclear envelope. Predicted to be part of nuclear pore central transport channel. Is expressed in pancreas epithelium. Orthologous to human NUP54 (nucleoporin 54). [provided by Alliance of Genome Resources, Apr 2022] |
Species | Scientific Name | Retrocopy | |
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Human | Homo sapiens | Without Homology |
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Chimpanzee | Pan troglodytes | Without Homology |
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Bonobo | Pan paniscus | Without Homology |
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Gorilla | Gorilla gorilla | Without Homology |
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Orangutan | Pongo abelii | Without Homology |
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Gibbon | Nomascus leucogenys | Without Homology |
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Green monkey | Chlorocebus sabaeus | Without Homology |
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Crab-eating macaque | Macaca fascicularis | Without Homology |
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Rhesus | Macaca mulatta | Without Homology |
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Baboon | Papio anubis | Without Homology |
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Golden snub-nosed monkey | Rhinopithecus roxellana | Without Homology |
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Marmoset | Callithrix jacchus | Without Homology |
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Mouse lemur | Microcebus murinus | Without Homology |
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Rat | Rattus norvegicus | Without Homology |
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Chinese hamster | Cricetulus griseus | Without Homology |
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Rabbit | Oryctolagus cuniculus | Without Homology |
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Pig | Sus scrofa | Without Homology |
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Cow | Bos taurus | Without Homology |
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Sheep | Ovis aries | Without Homology |
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Dolphin | Tursiops truncatus | Without Homology |
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Horse | Equus caballus | Without Homology |
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Dog | Canis familiaris | Without Homology |
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Panda | Ailuropoda melanoleuca | Without Homology |
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Cat | Felis catus | Without Homology |
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Pale spear-nosed bat | Phyllostomus discolor | Without Homology |
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Velvety free-tailed bat | Molossus molossus | Without Homology |
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Greater mouse-eared bat | Myotis myotis | Without Homology |
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Kuhl's pipistrelle | Pipistrellus kuhlii | Without Homology |
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Greater horseshoe bat | Rhinolophus ferrumequinum | Without Homology |
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Egyptian rousette | Rousettus aegyptiacus | Without Homology |
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Sloth | Choloepus didactylus | Without Homology |
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Tasmanian Devil | Sarcophilus harrisii | Without Homology |
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Opossum | Monodelphis domestica | Without Homology |
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Platypus | Ornithorhynchus anatinus | Without Homology |
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Chicken | Gallus gallus | Without Homology |
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Turkey | Meleagris gallopavo | Without Homology |
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Zebra Finch | Taeniopygia guttata | Without Homology |
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Budgerigar | Melopsittacus undulatus | Without Homology |
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Painted Turtle | Chrysemys picta | Without Homology |
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Lizard | Anolis Carolinensis | Without Homology |
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Frog | Xenopus tropicalis | Without Homology |
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Zebrafish | Danio rerio | Without Homology |
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Drosophila | Drosophila melanogaster | Without Homology |
>Nup54P1 |
GGCACTCAGAACAAAGGTTTTGGCTTTGGTACTGGCTTTGGCACAACGACAGGAACTGGCACTGGTTTAGGCACTGGTTTGGGAACCGGACTTGGATTTGGAGGATttaagacttCTTTAGGTGGTCTCTTCAGTCAGCCTACCCAGGCTCCTGCACAGTCTACCCAGCTCATCAACACTGCTAGTGCACTTTCTGCTCCAACGCTACTGGGGGATGAGAGAGACGCCATCTTGGCAGAGTGGAACCAGTTGCAGGCCTTCTGGGGAACAGGAAAAGGATATTTCAATAATAACATTCCTCCAGTGGAGTTTACCCAGGAGAATCCCTTTTGCCGGTTTAAGCCTGTAGGCTATAGTTGTATGCCCAATAATAAAGATGAAGATGGGCtagtagttttaattttcaTTGGTACAATCATTGCATAAAGTTTTGGGAGGAAACCAAACCCTTACGGTCAATGTGGAGGGCATTAAGACGTTGCCGGATGATCAGACAGAAGTTGTCATTTATGTTGTTGAGCGTTCTCCAAATGGCACCTCGAGAAGAGTTCCAGCGACAACACTGTATGCCCACTTTGAGCAAGCCAACATTAAAGCCTAACTGCAGCAGCTTGGGGTGACCCTTTCTATGACCAGGACAGAACTGTCTCCCGCTCAGATCAAGCAGCTCTTACAAAACCCTCCCGCAGGTGTTGATCCTATTATTTGGGAACAGGCCAAGGTGGATAACCCAGACTCTGAAAAGTTAATTCCTGTACCAATGGTGGGTTTCAAAGAATTGCTTCGAAGACTGAAGGTTCAAGATCAGATGACTAAGCAGCATCAGACCAGACTAGATATCATATCTGAAGATATTAGTGAACTGCAAAAAAATCAAACTACAACTATGGCCAAAATAGCACAATACAAGAGGAAACTGATGGAGTTCTCCCACAGGACCTTACAGGTCCTAATCAAACAGGAAATCCAGAGGAAGAGTGGCTATGCGATCCAGGCTGATGAAGAGCAGTTGCAGGTTCAGCTAGATATTATTCAAGGGGAACTGAATGCACCCACTCAGTTCAAAGGTCGGCTGAATGAGCTGATGTCCCAGATCAGGATGCAGAATCATTTTGGAGCCGTGAAATCTGAAGAAAAGTACTACATAGATGCAGACCTATTACAAGAAATCAAGCAGCATTTGAAACAACAGGAAGGCCTTAGCCACTTGATTAGCATCATAAAAGATGACCTAGAAGACATAAAACTGGTAGAACATGGATTGAATGAGACCATCCATAGCAGAGGCGGTGTCTTTAGCTGATCGTTTACAGACTTGTTGGAGAGATTGATAAAATGCGTCTCCTTGCTACATCGAGCCTTCTTTCTGATGACCACATGGCCGGGGAAAAGGATGCTTCTCCTCACTGGGATGTCTGCGATCCTCAGAGGTTACTGTACGTTAAATCTGAAATGGTCACCACAAAGCCCTTCAAAGAGAATCTTTGAAAAGTTTATATCTAAAAGCTGTATTTACTTTTAAAGAAGTGTTACCCAAAGCATACACTGTTGTTCATTTTATAACAGCGTTAAGCGTAGTCACAGAGCCTGATGGTTACTCTCCGTTCTCCTCTCCATAGCACAGAGCGCCACAGAGCTACTTCCTACATAACACAACAAACTGTGATTCCATGCCTGTTGGAGGCTGTGCTTCAGGGTATAAATGCGTTTCAGCTTTTATATCTGTGAAATCAGCTGTGGAGAGTAAAGAAAATCCCAAAGTATTTAATGATTTGTGtggttttccttttgttctagaaagacttgaaaatatatttttatattattttacttatttagaaCTTACAGAAAATACCTAACCGGTTAGGATATGACAAAATCACCACTTTTgcaagctgttttgttttgttttgtttttttatttctaaaaatgaaatccttaaaataaaattttaatttgtaattta |
>NM_183392.2 |
GCTTAGACCGGGAAGGAGGCGGAACTAATGGTACGGACCGCCTGACGGTTCCCAGCCGGACAGAAGAGCGGAGGGCACTGGGCGTCGCGCCGCGCGAGCCCGGGGCCATCTAAGTGCTGCTCCCGCGACATGGCTTTCAATTTTGGGGCTCCTTCGGGCACTTCGGGCACCTCTACAGCCACCGCGGCACCGGCGGGTGGGTTTGGAGGATTTGGAACAACAACTACAACTGCAGGCTCTGCCTTCAGCTTTTCAGCCCCAACAAACACAGGCAGTACAGGCCTTCTCGGTGGCACTCAGAACAAAGGTTTTGGCTTTGGTACTGGTTTTGGCACAACGACGGGAACTGGCACTGGTTTAGGCACTGGCTTGGGAACCGGACTTGGATTTGGAGGATTTAatacccagcagcagcagcagcagcagcagacttCTTTAGGTGGTCTCTTCAGTCAGCCGACCCAGGCTCCTGCACAGTCTACCCAGCTCATCAACACTGCCAGCGCACTTTCTGCTCCAACGCTACTGGGGGATGAGAGAGACGCCATCTTGGCAAAGTGGAACCAGTTGCAGGCCTTCTGGGGAACAGGAAAAGGATATTTCAATAATAACATTCCTCCAGTGGAGTTTACCCAGGAGAATCCCTTTTGCCGGTTTAAGGCTGTAGGCTATAGTTGTATGCCCAATAATAAAGATGAAGATGGACtagtagttttaattttcaacaaaaaagaaacagatattAGAAGCCAGCAACAGCAATTGGTAGAATCATTGCATAAAGTTTTGGGAGGAAACCAGACCCTTACGGTCAATGTGGAGGGCATTAAGACGTTGCCGGATGATCAGACGGAAGTTGTCATTTATGTTGTTGAGCGTTCTCCAAATGGCACCTCGAGAAGAGTTCCAGCGACAACACTGTATGCCCACTTTGAGCAAGCCAACATTAAAGCCCAGCTGCAGCAGCTTGGGGTGACCCTTTCTATGACCAGGACAGAGCTGTCTCCCGCTCAGATCAAGCAGCTCTTACAAAACCCTCCCGCAGGTGTTGATCCTATTATTTGGGAACAGGCCAAGGTGGATAACCCAGACTCTGAAAAGTTAATTCCTGTACCAATGGTGGGTTTCAAAGAATTGCTTCGAAGACTGAAGGTTCAAGATCAGATGACTAAGCAGCATCAGACCAGACTAGATATCATATCTGAAGATATTAGTGAACTGCAAAAAAATCAAACTACGACTATGGCCAAAATAGCACAATACAAGAGGAAACTGATGGAGCTCTCCCACAGGACCTTACAGGTCCTAATCAAACAGGAAATCCAGAGGAAGAGTGGCTATGCGATCCAGGCTGATGAAGAGCAGTTGCGGGTTCAGCTAGATACTATTCAAGGGGAACTGAATGCGCCCACTCAGTTCAAAGGTCGGCTGAATGAGCTGATGTCCCAGATCAGGATGCAGAATCATTTTGGAGCCGTGAAATCTGAAGAAAAGTACTACATAGATGCAGACCTGTTACGAGAAATCAAGCAGCATTTGAAACAACAACAGGAAGGCCTTAGCCACTTGATTAGCATCATAAAAGATGACCTAGAAGACATAAAACTGGTAGAACATGGATTGAATGAGACCATCCATAGCAGAGGCGGTGTCTTTAGCTGACCGTTTACAGACTTGTTGCAGAGATTGATAAAATGCGTCTCCTTGCTACATCGAGCCTTCTTCACGATGACCACATGGCCGGGGAAAAGGATGCTTCTCCTCACTGGGATGTCTGCGATCCTCAGAGGTTACTGTACGTTAAATCTGAAATGGTCACCACAAAGCCCTTCAAAGAGAATCTTTGAAAAGTTTATATCTAAAAGCTGTATTTACTTTTAAAGAAGTGTTACCCAAAGCATACACTGTTGTTCATTTTATAACAGCGTTAAGCGTAGTCACGGAGCCTGATGGTTATTCTCCGTTCTCCTCTCCATAGCACAGAGCGCCACAGAGCTACTTCCTACATGACACAACAAACTGGGATTCCATGCCTGTTGGAGGCTGTGCTTCAGGGTATAAATGCATTTCAGCTTTTATATCTGTGAAATCAGCTGTGGAGAGTAAAGAAAATCCCAAAGTATTTAATGATTTGTGtggttttccttttgttctagaaagacttgaaaatatatttttatattattttacttatttagaaCTTACAGAAAATACCTAACCGGTTAGGATATGACAAAATCACCACTTTTgcaagctgttttgttttgttttgtttttttatttctaaaaatgaaatCCTTAAAATAAATTGTTAATTTGTAATTTTATGTAA |
PMID - Link | Title |
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