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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name PpihP5
Plot displaying the genomic locations of a retrocopy (in chr11) and its respective parental gene (in chr4). Each line represents a retrocopy.
Species Mus musculus
Coordinates chr11:102014877-102015483  UCSC
Strand +
Parental Sequence NM_001110130.1
Parental seq. overlap 606 bp
Parental seq. overlap (%) 95%
Genomic Region Intergenic
Retrocopy Summary PpihP5, located on chr11:102014877-102015483, is a retrocopy of the parental gene Ppih. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name Ppih
Full Name peptidyl prolyl isomerase H
Also known as 1100001J08Rik|2010111B15Rik|4833408F11Rik|CYP-20|CYPH|D4Wsu43e
Coordinate chr4:119157207-119177720
Strand -
Gene summary Predicted to enable cyclosporin A binding activity; peptidyl-prolyl cis-trans isomerase activity; and ribonucleoprotein complex binding activity. Predicted to be involved in positive regulation of viral genome replication; protein folding; and protein peptidyl-prolyl isomerization. Predicted to be located in nuclear speck. Predicted to be part of U4/U6 snRNP and U4/U6 x U5 tri-snRNP complex. Predicted to be active in cytoplasm and intracellular membrane-bounded organelle. Is expressed in several structures, including central nervous system; extraembryonic component; and retina. Orthologous to human PPIH (peptidylprolyl isomerase H). [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>PpihP5
TTTTCTACTTCCGGGTCAAAGCCATGGCGGTGGCAAATTCAAGTCCAGTCAATCCAGTGGTCTTCTTCGATGTCAGCATTGGCGGCCAGGAAGTTGGTCGCATGAAAATCGAGCTCTTTGCAGACGTGGTGCCTAAGACGGCAGAGAACTTTAGGCAATTCTGCACCGGAGAGTTCAGAAAAGATGGCGTTCCGATAGGATACAAAGGAAGCACCTTCCACAGGGTCATAAAGGATTTCATGATTCAGGGTGGAGATTTTGTTAATGGCGATGGCACTGGAGTCGCCAGTATTTACCGGGGTCCATTTGCGGATGAAAATTTTAAACTTAGACACTCTGCTCCAGGCCTGCTTTCCATGGCAAACAGTGGTCCCAGTACAAATGGCTGCCAGTTCTTTATCACGTGTTCTAAGTGTGATTGGCTGGATGGAAAGCATGTAGTGTTTGGAAAAATCATTGACGGACTTCTAGTGATGAGGAAGATCGAGTTCCAGGCTCCTTTGGGAAAGAGAGTTCAAGCTTGGACCCATTCATTAACCTGCCCAGCACTTACTGGGATTTTGGCTCTGATCCTGATGCCCACTGAATAAAATTCCActtcttggca
>NM_001110130.1
TCGCGGGACCTGCCACCGGAAGCCGGGTTTCTACTTCCGGGTCAAAGCCATGGCGGTGGCAAATTCAAGTCCAGTCAATCCAGTGGTCTTCTTCGATGTCAGCATTGGCGGCCAGGAAGTTGGTCGCATGAAAATCGAGCTCTTTGCAGACGTGGTGCCTAAGACGGCAGAGAACTTTAGgCAATTCTGCACCGGAGAGTTCAGAAAAGATGGCGTTCCGATAGGATACAAAGGAAGCACCTTCCACAGGGTCATAAAGGATTTCATGATTCAGGGTGGAGATTTTGTTAATGGCGATGGCACTGGAGTCGCCAGTATTTACCGGGGTCCATTTGCGGATGAAAATTTTAAACTTAGACACTCTGCTCCAGGCCTGCTTTCCATGGCAAACAGTGGTCCCAGTACAAATGGCTGCCAGTTCTTTATCACGTGTTCTAAGTGTGATTGGCTGGATGGAAAGCATGTAGTGTTTGGAAAAATCATTGACGGACTTCTAGTGATGAGGAAGATCGAGTTCCAGGCTCCTTTGGGAAAGAGAGTTCAAGCTTGGACCCATTCATTAACCTGCCCAGCACTTACTGGGATTTTGGCTCTGATCCTGATGCCCACTGAATAAAATTCCACTTCTTGGCATTGCA

Publications

PMID - Link Title