Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC100434822P1
Plot displaying the genomic locations of a retrocopy (in chr2B) and its respective parental gene (in chr21_NW_019937302v1_random). Each line represents a retrocopy.
Species Pongo abelii
Coordinates chr2B:106333773-106334698  UCSC
Strand -
Parental Sequence XM_024241533.1
Parental seq. overlap 797 bp
Parental seq. overlap (%) 51.3%
Genomic Region Intergenic
Retrocopy Summary LOC100434822P1, located on chr2B:106333773-106334698, is a retrocopy of the parental gene LOC100434822. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC100434822
Full Name N/A
Also known as TUBA3C
Coordinate chr21_NW_019937302v1_random:140695-148751
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens TUBA3CP16
Chimpanzee Pan troglodytes TUBA3CP1
Bonobo Pan paniscus LOC100993591P1
Gorilla Gorilla gorilla LOC101136583P1
Gibbon Nomascus leucogenys LOC100585215P1
Green monkey Chlorocebus sabaeus LOC103247857P1
Crab-eating macaque Macaca fascicularis LOC102121218P4
Rhesus Macaca mulatta TUBA3EP3
Baboon Papio anubis TUBA8P3
Marmoset Callithrix jacchus LOC100393171P1
Mouse lemur Microcebus murinus LOC105860065P3
Mouse Mus musculus Tuba8P1
Rat Rattus norvegicus Tuba8P1
Chinese hamster Cricetulus griseus LOC100762888_1P2
Rabbit Oryctolagus cuniculus LOC100350967P2
Pig Sus scrofa LOC100510930P2
Cow Bos taurus LOC100295712P1
Sheep Ovis aries LOC101108295P1
Horse Equus caballus LOC100065732P1
Dog Canis familiaris LOC477570P3
Panda Ailuropoda melanoleuca LOC100480515P1
Cat Felis catus LOC101090556P3
Pale spear-nosed bat Phyllostomus discolor TUBA8P4
Kuhl's pipistrelle Pipistrellus kuhlii TUBA8P3
Sloth Choloepus didactylus LOC119526134P7
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Dolphin Tursiops truncatus Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC100434822P1
GTGCACAGGACTTCAGGGCTTCCTGGTGTTCCACAGCTTTGGTGGGGGCACTGGCTCTGGCTTCACCTCACTCCTGATGGAGCGGCTCTCTGTTGACTATGGCAAGAAATCCAAGCTGGAATTCTCCATCTACCCAGCCCCCCAGGTGTCTACAGCCGTGGTCGAGCCCTACAACTCTATCCTGACCACCCACACCACCCTGGAGCACTCAGACTGTGCCTTCATGGTGGACAACGAAGCAATCTACGACATCTGCCGCCGCAACCTAGACATCGAGCGCCCAACCTATACCAACCTCAATCGCCTCATTAGCCAAATTGTCTCCTCCATCACAGCTTCTCTGCGCTTTGACGGGGCCCTCAATGTGGACCTGACAGAGTTCCAGACCAACCTGGTGCCCTACCCTCGCATCCACTTCCCCCTGGCCACCTATGCACCAGTCATCTCTGCAGAAAAGGCATACCACGAGCAGCTGTCGGTGGCAGAGATCACCAATGCCTGCTTTGAGCCTGCCAACCAGATGGTGAAGTGTGATCCCCGGCATGGCAAGTACATGGCCTGCTGCCTGCTGTACCGTGGAGATGTGGTGCCCAAGGATGTCAACGCTGCCATTGCTGCCATCAAGACCAAGCGCAGCATTCAGTTTGTGGACTGGTGCCCCACAGGCTTCAAGGTTGGTATCAACTACCAGCCTCCCACTGTGGTGCCTGGGGGTGACCTGGCCAAGGTGCAGCGTGCCGTGTGCATGCTGAGCAACACGACCGCCATCGCCGAGGCCTGGGCCCGCCTGGACCACAAGTTCGACCTGATGTATGCCAAGAGGGCGTTTGTGCACTGGTATGTGGGTGAGGGCATGGAGGAGGGTGAGTTCTCCGAGGCCCGTGAGGATATGGCTGCCCTGGAGAAGGATTACGAGGAGGTGGGCA
>XM_024241533.1
AGCGGGCCAATCCCAGACAGCGCGTGGGGGGAGGTTGCAGTTGGACGTGCGCAGCTGCAGCGGCGGTTGAGGTCAAGTAGTAGCGTTGGGCTGCAGCAGCGGCGGAGTTCAACATGCGCGAGTGTATCTCTATCCACGTGGGGCAGGCAGGTGTCCAGATCGGCAATGCCTGCTGGGAACTGTACTGCCTTGAACATGGAATTCAGCCCGATGGTCAGATGCCAAGTGATAAAACCATTGGTGGTGGGGATGACTCCTTCAACACGTTCTTCAGTGAGACTGGGGCTGGCAAGCACGTGCCCAGAGCAGTGTTTGTGGACCTGGAGCCCACTGTGGTCGATGAAGTGCGGACAGGAACCTACAGGCAGCTCTTCCACCCAGAGCAGCTGATCACCGGGAAGGAAGATGCGGCCAATAATTACGCCAGAGGCCATTACACCATCGGCAAGGAGATCGTCGACCTGGTCCTGGACCGCATCCGCAAACTGGCGGATCTGTGCACGGGGCTGCAGGGCTTCCTCATTTTCCACAGCTTTGGGGGCGGCACTGGCTCTGGGTTCGCATCTCTGCTCATGGAGCGGCTCTCAGTGGATTATGGCAAGAAGTCCAAGCTAGAGTTTGCCATTTACCCAGCCCCCCAGGTCTCCACAGCCGTGGTGGAGCCCTACAACTCCATCCTGACCACCCACACGACCCTGGAACATTCTGACTGTGCCTTCATGGTCGACAATGAAGCCATCTATGACATATGTCGGCGCAACCTGGACATCGAGCGTCCCACGTACACCAACCTCAATCGTCTGATTGGGCAGATCGTGTCCTCCATCACGGCCTCCCTGCGATTCGACGGGGCCCTGAATGTGGACTTGACGGAATTCCAGACCAACCTAGTGCCGTACCCCCGCATCCACTTCCCCCTGGCCACCTACGCCCCGGTCATCTCAGCCGAGAAGGCCTACCACGAGCAGCTGTCCGTGGCCGAGATCACCAATGCCTGCTTCGAGCCAGCCAATCAGATGGTCAAGTGTGACCCTCGCCACGGCAAGTACATGGCCTGCTGCATGTTGTACAGGGGGGATGTGGTCCCGAAAGATGTCAACGCGGCCATCGCCACCATCAAGACCAAGCGCACCATCCAGTTTGTGGATTGGTGCCCAACTGGATTTAAGGTGGGCATTAACTACCAGCCCCCCACGGTGGTCCCCGGGGGAGACCTGGCCAAGGTGCAGCGGGCTGTGTGCATGCTGAGCAACACCACGGCCATCGCGGAGGCCTGGGCTCGCCTGGACCATAAGTTCGATCTCATGTATGCCAAGCGGGCCTTTGTGCACTGGTACGTGGGAGAAGGCATGGAGGAGGGGGAGTTCTCCGAGGCCCGCGAGGACCTGGCAGCTCTGGAGAAGGATTATGAAGAGGTGGGCGTGGATTCCGTGGAAGCTGAGGCTGAAGAAGGTGAAGAATACTGAGGGGCGGGTGTGGTGGGTTCTCCACTGCCACCCCCAGCATGGCTGCTTTCAAGTTCTTTGCAATTAAAGGTTCTGTATAAAACCAAGA

Publications

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