Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name Acsl1P1
Plot displaying the genomic locations of a retrocopy (in chr5) and its respective parental gene (in chr8). Each line represents a retrocopy.
Species Mus musculus
Coordinates chr5:26560413-26563863  UCSC
Strand +
Parental Sequence NM_001302163.1
Parental seq. overlap 2948 bp
Parental seq. overlap (%) 73.6%
Genomic Region Intergenic
Retrocopy Summary Acsl1P1, located on chr5:26560413-26563863, is a retrocopy of the parental gene Acsl1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name Acsl1
Full Name acyl-CoA synthetase long-chain family member 1
Also known as Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1
Coordinate chr8:46924074-46989088
Strand +
Gene summary The protein encoded by this gene belongs to a family of acyl coenzyme A synthetase proteins, which convert long chain fatty acids to acyl CoA products via an ATP-dependent pathway. This enzyme is enriched in heart, liver and adipose tissue, where it functions in lipid synthesis and mitochondrial and peroxisomal beta-oxidation. In addition, it is expressed in monocytes and macrophages where it appears to have a functionally distinct role in mediating inflammatory and innate immune responses. A pseudogene of this gene is found on chromosome 5. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Oct 2014]

Homology

Species Scientific Name Retrocopy
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>Acsl1P1
AGAAGCCACCATGTGACTTCTCCATGAAGTCTGTGGAAATATCAGGTACTATTGAAGGTGTTCAAAGATCAGCAGTCCTCAACGATGACAAGCTCTTGGTGTGCTACTACGATGACATCAGAATGATGTATGATGGCTTCCAGAGTGGGATTCAGGTGTCAAACAATGGCCCTTGTTAGGTTCTAGAAAGTCAAACCAGCCCTATGAGTAGATTTCCTACAAAGAGGTTGCAGAACTGGCTGAGTGCATAGGCTCTGCGCTGATCCAGAAGGGTTTCAAGACTTGCTTAGAGCAGTTCATCAGCATCTTCTCTCAAAACAGACCTGAGTGGGTGATCATTGAGCGGGGATGCTTCTCTTACTCGATGGTGATTATTCTGCTCTATGACAGCCTTGGAACCGACACCATCACTTACATAGTGAACAAAGCTGAACTCTCTATGATTTTTTTGCTGGCAAGCAAAACTCTTATTAGAAGATGTAGAAAATAAGTTAACACCATGCCTTAAAATCAAATCATCATGGCCTCTTATGGCAATGATCTGGTGGAACGAGGCAAAAAGTGTGGAGTAGAAATAAGCCTAAAAACTCTGAAGGACCTTGGTAGAGTGAACAGAATAAAGCCCAAGCCTCCAGACCTTGAAGATCCTGTGCTGATTTGTTTCGAGAGTGGAATTACAGGCAACCCCAAAGGAGCAATGATCACTCATCAAAACATTAGGAACGATTGCTCAGGTTTtatgaaagggaaagaagagtgCATTCATCACTTTCCCAGATGATGTTCTGATCTTACCCATATGTTTGAGACCTTGATAGTGCGTGTATGCTGTGTCATGGTGCTAAGATAGGACTTTTTCCAAGGAGCTATCAGGCGGCTTATGGGCGACCTCGAAGTGCTTCAGCCCACCATCTTCCCTGCGGTTCTAGACTGCTAAACTGGATGCTTGACAGAATTTCTGGACAAGCAAACACTTCGATGAAGCGATGGCTCTTGGACTTTGCCTCTAAAAGGAAAGAGGCAGAGCTTCACAGAGGCAACATCAGAAGCAACAGCCTGCAGAATAAACTCATCTTTCACAAGATACGGTTGAGTCTGGGTGGGAAAGTCTGGCTGATAATCACAGGAGCAGCCCCAGTGTCAGCTACAGTGCTGCCATTTCTGAGGACAGCTCTCAGCTGTCAGTTCTATGAAGGCTAAGGACAGATTGAGCacactgctggctgctggctgagcTTGCCTGGAAACTGGATGGCAGGTTATGTTGGTGCCCCCATGCCTTGCAATTATTATATAAAGCTTGTAGATGTGGAAGACATGAGTTACCTGGCTGCCAAGGGTGAGGTTGAGGCATATGTGAAAGGAGCAAACATGTTCAAAGGCTACTTGAAAGACCCAGCAGGAACAGCTGAGTCCTGGCTGGTTACACAGAGAGAACACTGGAGAATGGCCGCCAATGGCACCTTGAAGATTATTGACAGGAAAAAGCACATATTTACACTAGCCCAAGGAGAGTACATAGCACCAGAAAAGATTGACAATATCTACCTGCAGAGTGAAGTGATGGCCCAGGTGTTTGTCCATGGAGAAAGCTTGCAGGCCTTTTTCATAGCAATTGTGGTACCCGACGTTGAGAGTCTACCTTCCTGGGCAGAGAAGAGAGGATTACAACAGTCCTTTGAAGAACATTGCTGTGCATCAAGAATTGTTTTCTATTGACAATGGCCTTCTGATTCCAACACTGAAGGTGAAAAGACCAGAGCCACACAACTATTTCAGGTTACCGATAGATGAACTGTAGTCCACCATCAAGATCTAACGTGAGGAAGAATACTTAGAAGAAATGCTGTACCTCTACAGTCCTCCCCGTACCAATGGCCTTTGCGTTGGTAACTTGGCCTGCAGCAAGTGTGGGAAAGGAAATACCCTGTCGCTGGACTTGTCCACAAAGTCTTGTCATAGGGATTGTCAAGGGCATGGGACACTTCCTTACTTACAGTCACCTGTGTTGCAGCCCGTGATCCTGGGGACACACAATTTCCAAAATGAGTCTTAAACATTGTAAAGGGGAACCCACAAAAGTGCTAAGTTATTTAAGACGTCAACTGATAAGGTGGGTGTTACAACTTCTGTCTCCTGTTTTTGTAACCAAGGGGTTAGGACTTTTTCTGGTATGTAAGAGCACCGTACACTGGAGGCAAGCTGTCCTTTTAAGAACAACTGTCCAGGCTGAAGAAAGTCACAGTGGACCAGAGAATTTTCTTTTGAACCTCTCTTCCCCCTTGACCCATTCCCTCACCACCTTACATATAGTACACTCACATGACCTTTCTGGTTTTTAAGGGTTCCAAATGGTCCCTGTTGTACCTGCTGGAACACAAGATTTTCAGTAAATTAAAGAGCAGATCCTCCTCAGAAAATGTAGGTGCCCAGTCTCAGATAAAACAAAATGGTGGCTCACACAAATGTTCTCAGATGTTCTCAGACTCCACTCCAAATCTGGTTCCCTGCTGCCCCTTTGTCCCAGGGGTTATAAGGAATCCTGCCTTAGACTCTGCAATGAAGATGGTATTTCAAAGAACGCCCTGAATCGGCCATGCTCAACTGTGACACCTCCACCGCTGTCCACCTGCTCCTCCTGGAACCAGCCCATGTCTGTAACGGTCACTGGACTCCCTCCTGGAACCAGCCCATGTCTGTAATGGTCACTGGACTCCCTCCTGGAACCAGTGCATGTCTGTGATGGTCACTGGACTCCCTCCTGGAACCAGTGCATATCTGTGATGGTCACTGGACTCCAAACATGGTTTTCATGGCAAGGGATGATGTGGTGAtcaacttgcttttttttcccctcccaatTAAACTCAGGCAAAGCATGTCTTCAAAACTATTTAGTGAGTTAATATACGTGGGTACTTATTAAAATGCACAGTAACAAGCAAATATCCTTATTATAAAACTACCTGATTTATGTGAAATGCATTTGACAAGCCAAAAATCTGGGGTTAAGAAGTCTGAAAAAAATTTATATCCTAGGTTTAACTTCCCaaggtatattttttaaaagttaaattggGAAATTAACAGCATTTCACTTTATTGCGAGTCTTTGCCACACTGACCTATCCAAGCTGCTGTTTACACATTTGAAGCCACTATTGTTGGCTGTGTGACAGTGTGTGTTATTGAAGCACAACTGGGTTTGTACTAAAGAACTGTCATTATAATAACACCATTTGGTAGCTTAACTTCATATTTGTATTCTTAATTGCACAGGAAGTTGATAATTTATCACAATGAGGATTTGAATGTTTGCTTTTAGTGTTGGCTATTTCTATGTTTTATAAACCAAAATCAAATTTCCAAAAACAATGAAggaaaccaaaataaatatttctgcatttggag
>NM_001302163.1
GTGTCTGCTAGTTACCTTTAGCCCAGTGGGCAGCGGTGTAGGACTCGGCATGTGACAAATGCCCTGAAAGACCTTGGCAGGCCTGGTAAGCACCCGCTGAGCTGCCctggcccccaccccacccccagcctcactGCCCTTTTCTGATTCTGCTGCGGTGTGTCACCTAGCAGTCAGCTGTCGGATGGCACAGATGAATTCTGCATAGAGAACCACCAACCCAGAACCATGGAAGTCCATGAATTGTTCCGGTATTTTCGAATGCCAGAGCTGATTGACATTCGGCAGTACGTGCGCACCCTTCCAACCAACACCCTCATGGGGTTTGGGGCTTTTGCAGCGCTCACCACCTTCTGGTATGCCACCAGGCCTAAGGCCCTGAAGCCACCATGTGACCTCTCCATGCAGTCAGTGGAAATAGCGGGTACCACTGATGGTATTCGAAGATCAGCAGTCCTTGAAGATGACAAGCTCTTGGTGTACTACTACGACGATGTCAGAACCATGTACGATGGCTTCCAGAGGGGGATTCAGGTGTCAAatAATGGTCCTTGTTTAGGTTCTCGGAAGCCAAACCAGCCCTATGAGTGGATTTCCTACAAAGAGGTGGCAGAACTGGCTGAGTGCATAGGCTCCGGGCTGATCCAGAAGGGGTTCAAGCCTTGCTCCGAGCAGTTCATCGGCCTCTTCTCTCAAAACAGACCCGAGTGGGTGATCGTCGAGCAAGGATGCTTCTCTTACTCAATGGTGGTCGTCCCGCTCTATGACACCCTTGGAGCTGACGCCATCACCTACATAGTGAACAAAGCTGAACTCTCTGTGATTTTTGCTGACAAGCCAGAAAAAGCCAAACTCTTATTAGAAGGTGTAGAAAACAAGTTAACACCATGCCTTAAAATCATAGTCATCATGGACTCCTACGGCAGTGATCTGGTGGAACGAGGCAAGAAGTGTGGGGTGGAAATCATCAGCCTCAAAGCTCTGGAGGACCTTGGAAGAGTGAACAGAGTGAAGCCCAAGCCTCCAGAACCCGAAGATCTTGCGATAATTTGTTTCACAAGTGGAACTACAGGCAACCCCAAAGGAGCAATGATCACTCACCAAAACATTATAAACGACTGCTCAGGTTTTATAAAAGCAACAGAGAGTGCATTCATCGCTTCCACAGATGATGTGCTGATATCTTTCTTGCCTCTCGCCCATATGTTTGAGACCGTTGTAGAGTGTGTAATGCTGTGTCATGGAGCTAAGATAGGATTTTTCCAAGGAGATATCAGGCTGCTTATGGACGACCTCAAGGTGCTTCAGCCCACCATCTTCCCTGTGGTTCCCAGGCTGCTGAACCGGATGTTcgacagaATTTTTGGACAAGCAAACACTTCCTTGAAGCGATGGCTGTTGGACtttgcctccaaaaggaaagagGCGGAGCTTCGCAGTGGCATCGTCAGAAACAACAGCCTGTGGGATAAACTCATCTTCCACAAGATACAGtcgAGCCTGGGTGGGAAAGTCCGGCTGATGATCACAGGAGCAGCCCCGGTGTCTGCCACAGTGCTGACGTTTCTGAGGACAGCGCTCGGCTGCCAGTTCTATGAAGGCTACGGACAGACCGAGTGCACTGCTGGTTGCTGCCTGAGCTTGCCCGGAGACTGGACGGCAGGCCATGTTGGAGCCCCCATGCCTTGCAATTATGTAAAGCTTGTGGATGTGGAAGAAATGAATTACCTGGCATCCAAGGGCGAGGGTGAGGTGTGTGTGAAAGGGGCAAATGTGTTCAAAGGCTACTTGAAAGACCCAGCAAGAACAGCTGAAGCCCTGGATAAAGATGGCTGGTTACACACGGGGGACATTGGAAAATGGCTGCCAAATGGCACCTTGAAGATTATCGACAGGAAAAAGCACATATTTAAACTAGCCCAAGGAGAGTACATAGCACCAGAAAAGATTGAAAATATCTACCTGCGGAGTGAAGCCGTGGCCCAGGTGTTTGTCCACGGAGAAAGCTTGCAGGCCTTTCTCATAGCAGTTGTGGTACCCGACGTTGAGAGCCTACCGTCCTGGGCACAGAAGAGAGGCTTACAAGGGTCCTTCGAAGAACTGTGCAGGAACAAGGATATCAATAAAGCTATCCTGGACGACTTGTTGAAACTTGGGAAGGAAGCCGGTCTGAAGCCATTTGAACAGGTCAAAGGCATTGCTGTGCACCCGGAATTATTTTCTATTGACAACGGCCTTCTGACTCCAACACTGAAGGCGAAGAGGCCAGAGCTACGGAACTATTTCAGGTCGCAGATAGATGAACTGTACGCCACCATCAAGATCTAACGTGAGGAAGGATACTTAGAAGAAATGGCGCATCTCCACAATCCTCCTCGTACCAATGGCCTTCGAGTTGGTAACTTTGCCTGCAGCGAGTGTGGGAAAGGAAATGCCCTGCCGCCGGACTTGTCCACGGGGTCTTACCATAGGGATAGTCGAGGGCACGGAACACTGCCTTACTTACAGTCACCTGTGTTGCAGCCCATGATCCCGGGGACACACAATTTCCAAAACGAGCCTTAAACATTGTAAAGGGGAACCCATAAAAGTGCTAAGTTATTTAAGACTTCTTCAACCAATAAGGTGGATGCTACAAGTTCTGTCTCCTGTTTTTCTAACTGAGGGGTTAGGACTTATTCTTTCTGATATGTCTGCTGCTTGCTGCGCGTTTTGCAGCTGTCTGCTGCTCTGAAGAGCACCGTACACTGGAGGAAAGCTGTCCCTTTAAGAACAACTGTCCAGGCTGAAGAAAGTCACAGTGGACCAGAGGTTTTCCTTTTGaacccctcctcccccttgcccctTTCCCTCACCACCTCACATACAGTACACTCACATGACCTTTCTGGTTTGTAAGGGTTCCACACGGTCCCTGTTTGCGCCTGCTGGAACATGAGGTTTTCAGTAAACTAAAGAGCAGACCCTCTTCAGAACATGTGGGTGtccagtctcagaaagaaaaaaaaaatggcggCTCACTCAAACgttctcagactcctctccaaaTCTggtctcctgcctccctccccctcgTCCCAGGGGTTATAAGAAATCCTGCCTTAGACTCTGCAATGAAGATGGTATTTCAAAGAACGCCCTGGAGCGGCCATGCTCAACTGTGACATCTCCACCGCTCTCCACCTGCTCCCTCGTGGAAGCAGCCCATGTTGGTAATGGCCACTGGGCTCCCTCGTGGAAGCAGCCCATGTTGGTAACGGCCACTGGGCTCCCTCGTGGTTTTCCTGGCAAATGATAATGCGGTGATTaccttgctttttttcccctcccagttAAACTCAGGCAAAGCATGTCTTCAAAACTATGTAGGGAGCTGATATACATGGGTACTTATTAAAATGGACAGTAACAAGTAAATATCCTTATTATACAACTACCTGATTTATGTGAAATGCATTTGACAAGCCAAAAATCTGGGATGAAGAAATCTGAGGGGAATAAAATCATACCCTGGGATTCACTTCCCaaggtatatatattttttaagttaatttgggAAATTAACAGCATTTCACTTTACTGCAAGTCTTTGCCACATCCGACCTATCCAAGCTGTTGTTTATACATTTGAAGCCACTGTTGTTGGCTGTGTGACAGTGCGTGTGTTATTGAAGCACAACTGGGTTTGCACTAAAGAATCATCATTGTAATAACACTATTTGGTAGCCTAACTTCATACTCGTATTCTTAATTGCACAGGAAGTCGCTAATTTGTCACAACGGGGTTTTGAATGTTTGCTTTCAGTGTTGGCTATTTCTATGTTTTATAAACCAAAACAGAATTTCCAAAAACAATGAAggaaaccaaaataaatatttctgcaTTTGGAGTGAGTGGA

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