Retrocopy Name | RbpjP2 |
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Species | Mus musculus | |
Coordinates | chr6:46503867-46507818 UCSC | |
Strand | - | |
Parental Sequence | NM_001080928.1 | |
Parental seq. overlap | 3801 bp | |
Parental seq. overlap (%) | 70.5% | |
Genomic Region |
Intragenic (Cntnap2) |
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Retrocopy Summary | RbpjP2, located on chr6:46503867-46507818, is a retrocopy of the parental gene Rbpj. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
Gene Name | Rbpj |
Full Name | recombination signal binding protein for immunoglobulin kappa J region |
Also known as | CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh |
Coordinate | chr5:53713121-53814787 |
Strand | + |
Gene summary | Enables several functions, including DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and protein N-terminus binding activity. Involved in several processes, including circulatory system development; positive regulation of signal transduction; and regulation of transcription by RNA polymerase II. Acts upstream of or within several processes, including animal organ development; blood vessel morphogenesis; and regulation of transcription, DNA-templated. Located in nucleus. Part of transcription regulator complex. Is expressed in several structures, including early conceptus; genitourinary system; neural ectoderm; paraxial mesenchyme; and retina. Used to study aortic valve disease. Human ortholog(s) of this gene implicated in Adams-Oliver syndrome and dilated cardiomyopathy. Orthologous to human RBPJ (recombination signal binding protein for immunoglobulin kappa J region). [provided by Alliance of Genome Resources, Apr 2022] |
Species | Scientific Name | Retrocopy | |
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Human | Homo sapiens | Without Homology |
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Chimpanzee | Pan troglodytes | Without Homology |
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Bonobo | Pan paniscus | Without Homology |
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Gorilla | Gorilla gorilla | Without Homology |
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Orangutan | Pongo abelii | Without Homology |
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Gibbon | Nomascus leucogenys | Without Homology |
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Green monkey | Chlorocebus sabaeus | Without Homology |
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Crab-eating macaque | Macaca fascicularis | Without Homology |
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Rhesus | Macaca mulatta | Without Homology |
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Baboon | Papio anubis | Without Homology |
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Golden snub-nosed monkey | Rhinopithecus roxellana | Without Homology |
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Marmoset | Callithrix jacchus | Without Homology |
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Mouse lemur | Microcebus murinus | Without Homology |
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Rat | Rattus norvegicus | Without Homology |
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Chinese hamster | Cricetulus griseus | Without Homology |
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Rabbit | Oryctolagus cuniculus | Without Homology |
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Pig | Sus scrofa | Without Homology |
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Cow | Bos taurus | Without Homology |
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Sheep | Ovis aries | Without Homology |
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Dolphin | Tursiops truncatus | Without Homology |
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Horse | Equus caballus | Without Homology |
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Dog | Canis familiaris | Without Homology |
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Panda | Ailuropoda melanoleuca | Without Homology |
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Cat | Felis catus | Without Homology |
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Pale spear-nosed bat | Phyllostomus discolor | Without Homology |
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Velvety free-tailed bat | Molossus molossus | Without Homology |
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Greater mouse-eared bat | Myotis myotis | Without Homology |
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Kuhl's pipistrelle | Pipistrellus kuhlii | Without Homology |
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Greater horseshoe bat | Rhinolophus ferrumequinum | Without Homology |
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Egyptian rousette | Rousettus aegyptiacus | Without Homology |
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Sloth | Choloepus didactylus | Without Homology |
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Tasmanian Devil | Sarcophilus harrisii | Without Homology |
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Opossum | Monodelphis domestica | Without Homology |
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Platypus | Ornithorhynchus anatinus | Without Homology |
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Chicken | Gallus gallus | Without Homology |
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Turkey | Meleagris gallopavo | Without Homology |
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Zebra Finch | Taeniopygia guttata | Without Homology |
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Budgerigar | Melopsittacus undulatus | Without Homology |
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Painted Turtle | Chrysemys picta | Without Homology |
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Lizard | Anolis Carolinensis | Without Homology |
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Frog | Xenopus tropicalis | Without Homology |
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Zebrafish | Danio rerio | Without Homology |
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Drosophila | Drosophila melanogaster | Without Homology |
>RbpjP2 |
GCCTATAGGAAGTTTGGTGAGCGGCCTCCACCCAAACGACTCACTAGGGAAGCTATGCGAAATTATTTAAAAGAACGAGGGGATCAAACAGTGCTCATTCTTCATGCAAAAGTTGCACAGAAGTCTTACGGAAATGAAAAACGATTTTTTTGCCCTCCTCCTTGTGTGTATCTTATGGGCAGtggttggaagaaaaaaaaagagcaaatggAACGAGATGGATGTTCTGAACAAGAGTCTCAACCCTGTGCGTTTATTGGAATAGGAAACAGTGACCAAGAAATGCAGCAGCTGAACTTGGAAGGGAAGAACTACTGCACAGCCAAAACATTGTACATATCTGATTCAGACAAGAGAAAACATTTCATGTTGTCTGTAAAGATGTTCTATGGCAACAGCGATGACATTGGTGTGTTCCTCAGCAAGCGGATAAAGGTCATCTCCAAACCCTCCAAAAAGAAGCAGTCACTGAAGAATGCTGACTTGTGCATTGCTTCAGGAACGAAGGTGGCACTGTTCAATCGCCTTCGGTCCCAGACAGTTAGTACCAGGTACCTGCATGTAGAAGGAGGGAATTTCCACGCCAGTTCACAACAGTGGGGAGCATTTTACATCCATCTCTTGGACGACGACGAGTCGGAAGGAGAGGAGTTCACAGTTAGAGATGGCTACATCCATTACGGGCAGACTGTCAAGCTTGTGTGCTCAGTGACTGGCATGGCACTCCCAAGATTGATAATTAGGAAAGTTGATAAGCAGACGGCATTACTGGATGCAGACGACCCTGTATCACAACTCCACAAATGTGCATTTTACCTTAAGGATACAGAAAGAATGTACTTGTGCCTTTCTCAAGAAAGAATAATCCAATTTCAGGCCACTCCATGtccaaaagaacaaaataaggAAATGATAAACGATGGAGCTTCCTGGACAATCATTAGCACAGACAAGGCAGAATACACGTTCTATGAGGGAATGGGCCCCGTCCTTGCCCCAGTCACCCCTGTGCCTGTCGTAGAAAGTCTTCAGTTGAATGGCGGCGGGGACGTAGCAATGCTTGAACTTACAGGACAAAACTTTACTCCAAATTTACGAGTGTGGTTTGGGGATGTAGAAGCCGAAACAATGTACAGATGTGGAGAGAGCATGCTCTGTGTGGTCCCAGACATTTCTGCATTCCGGGAAGGTTGGAGATGGGTCCGCCAGCCAGTCCAGGTTCCAGTGACTTTGGTCCGAAATGACGGGGTCATTTACTCCACCAGCCTTACCTTCACCTACACACCAGAGCCAGGGCCGAGGCCACACTGCAGCGCTGCAGGAGCGATTCTCAGAGCCAACTCCAGCCAAGTGCCCTCCAATGAGTCAAACACAAACAGCGAGGGGAattacacaaatgccagcacaaaTTCTACCAGTGTCACATCGTCCACAGCAACCGTGGTGTCCTAACTACCGTCTTTTTGCTGGGACTGAAACTGACTTGAATGCAGCAAAAAGTTGACAGAGAAAGGCAAGGATAAAGTGAACAATCTTTTGTGGTTTCTTGGGGAAACGTTTCGTACCAGGTGATCTATTCAAAACTGCCAGTGCAGGTGTGACATGCAGAGGCCACAGTACAATGAACAACATCAGAATGCACAGGCTGATGGAAATCCAGGTTTTCAGCTgtccctctcacacacacccctttaatGGCCAGGAAACAGatatgtggctggagcacaggctAAGCTAGAAGACACAAACCTAACATAGACTTATGGACCAAGGGACTCGCATAAGCTTTAGTGAAAGGTACATTTTCACCATGCCTTTTTTATATCACAGTGTGTACTACACCTTGTTACCAAACAGGTTGCGCTCCCCACCCTTTGAGGGTTGGCTCTAAAGTACATTCAGGTTCGAGCCTCACCATGTTTGTTCAGTCTGAACACTGAACACTTCCAGGTTCTTGTGGTCTAAGGCTGGAACTTTTTTAAGCTGAAGTCTTATGACTTTTTCATAAGTTGGAATTATTTTGATTTCAGCAAGTCAAATTTTGTAAAGGCCtgcatattttttttaagattatatgaAGTCTGCAAAAGCTTTAAAAATGCCTCTGCCTTGCCTGCAATACATGCAATGTGTGTTAACTGAGTCTGTTCTCAGAATCTGTTGGTAGTTATTTCtgtgttttccctttttttaaagaaatgtatttatagTGGTAATCTAAGAGATGCTAACAGCTCCGTGTGGCCATTTAGCCCTTTCTGAGTTCATGGCAGTGAGCACCGCCGTTCGAAGGCTGTGCGCCTCTGCCTGTTCATCAGTTCATCTGTGTTCCAGGATTTGTTCAGGTTTCCCCTTCCCCCAAATCTTGTACATAACTTGTATTAtgtgtaagttaaacattttaTCTTTACTTGGAATGTTCCCAGTGATTACATTTCACAGGGTGTTTCCCACCTTGTTGGCAAATGACAAAAAATATCATGCGAATTATTTGCTACCAAGATGGTGCCCGTAGGGTAAAATGAGGAACATCTCTGCAGGATGATTTattgtatgtttttctttttttttagcctAGCCAGAACATCATTATAATTTTAAAGACCATAAGATGGCTTTTATTAGATGATAACTAAATAAACTGAACTAAGTAGCCAGAAGACAGTACCTTAGAGACTGATAGTTGTAagtttataaaaatacaaatgtaacttatatttccattttcctcTTTGCCCCTTTGTTTATTTTCCCCAGTAGAAATGTTCTgtccagattttttttcccctttttagtTAAGCCTTGCTTGCATTCAGGCTTGTGTGTCAGCCCTGTGTGCCAATATGCCAGATTCATTTTGTTTCCATCCCTGCACTTTGGTTATTCCTCGTTCAGTTTCTTGGGAATTGAAGCAGACTCATTGGGCTACATTTAGTACAAGAACCACATGTGTGATGTTAAAGGACACAGTCTAGTGATGCCATCATCCTTGAGTAAAAACTACCTCTAGATTGTGGTAAGCTTTTACTGTCCCTTAAAACAGGAGCCACTAGTACCTTACGAATGCAGACTGTAACTTCTATGGCATTTTCTGGTGTCTTtctggctctctgggcttctgAAAGTTTTCACGTAGACCCTTAGACTCCTCTGTCAGGACCATTGCTTTCCAGCGTTGCTGCTTTCACTCGCTGTCTCGCAGACTGTACCACTGTAAGTGCCACTGCAAACATCTTTAAACGGCCTCCTCCTTGGCTTGTCAAGGGGAAGGCCACCTGTAAGATGTGGTGGTGACAGCCTTCCTGTCCACCCCAGGCTGCTCCTTACCAGCTGTTCTAGCCGATTCTCTTCAGATCAGCTACAGCCCACCTCCTCCCCGCCCCGCCTCACCCCTCCAGGCTGTCTCAGTGGTCCAGGGCAGAGCTCACTGTGGCCTTACTGATCTATCTCTGCAGTAACTGTTCTCCCTCAGTTGCGATGGAAGCAGGCCCCTGCGATCTGTTCAGAGCCTGAGCAGTTTGCAGTTCCGTTGTGCTTTCTGAGGTCCTAGATTCAGGATGTAGTTAAGTCGATAACTGAGAACAGATGAGATGCTTTTAAAGAACAAACTCTTCCTTACCCAGCTTTGTAGCTTAAAGTAAGTTTTCAAGTTCATGGCTTTATTAAAATGaactttgactttttaaaatgcttataTCTCATTTcggttcttttgtttattttagtaaGAATTGAAACAGACTATAAGtagttttccttttacaaagtTCAAGAATGTAACAATAAAGGCATTTTGCTATGGTtctatgtcagaa |
>NM_001080928.1 |
CCTTCAAGATATCCAGCAAGTTGAGACTGGGTCCCACTCTGTAGCTCCGGCTGCTGTGGAATTTACAGCATAGCCCAGAACTCGAGGCGTCTGCTTAACCCGGCTTCTCAAATGTTGGCCTATAGGAAGTTTGGTGAGCGGCCTCCACCCAAACGACTCACTAGGGAAGCTATGCGAAATTATTTAAAAGAACGAGGGGATCAAACAGTGCTCATTCTTCATGCAAAAGTTGCACAGAAGTCTTACGGAAATGAAAAACGattTTTTTGCCCTCCTCCTTGTGTGTATCTTATGGGCAGtggttggaagaaaaaaaaagagcaaatggAACGAGATGGATGTTCTGAACAAGAGTCTCAACCCTGTGCGTTTATTGGAATAGGAAACAGTGACCAAGAAATGCAGCAGCTGAACTTGGAAGGGAAGAACTACTGTACAGCCAAAACATTGTACATATCTGATTCAGACAAGAGAAAACATTTCATGTTGTCTGTAAAGATGTTCTATGGCAACAGCGATGACATTGGTGTGTTCCTCAGCAAGCGGATAAAGGTCATCTCCAAACCCTCCAAAAAGAAGCAGTCACTGAAGAATGCTGACTTGTGCATTGCTTCAGGAACGAAGGTGGCACTGTTCAATCGCCTTCGGTCCCAGACAGTTAGTACCAGGTACCTGCATGTAGAAGGAGGGAATTTCCACGCCAGTTCACAACAGTGGGGAGCATTTTACATCCATCTCTTGGACGACGACGAGTCGGAAGGAGAGGAGTTCACAGTTAGAGATGGCTACATCCATTACGGGCAGACTGTCAAGCTTGTGTGCTCAGTGACTGGCATGGCACTCCCAAGATTGATAATTAGGAAAGTTGATAAGCAGACGGCATTACTGGATGCAGACGACCCTGTATCACAACTCCACAAATGTGCATTTTACCTTAAGGATACAGAAAGAATGTACTTGTGCCTTTCTCAAGAAAGAATAATCCAATTTCAGGCCACTCCATGtccaaaagaacaaaataaggAAATGATAAACGATGGAGCTTCCTGGACAATCATTAGCACAGACAAGGCCGAGTACACGTTCTATGAGGGAATGGGCCCCGTCCTTGCCCCAGTCACCCCTGTGCCTGTCGTAGAAAGTCTTCAGTTGAATGGCGGCGGGGACGTAGCAATGCTTGAACTTACAGGACAAAACTTTACTCCAAATTTAAGAGTGTGGTTTGGGGATGTAGAAGCCGAAACAATGTACAGatgtggagagaGCATGCTCTGTGTGGTCCCAGACATTTCTGCATTCCGGGAAGGTTGGAGATGGGTCCGCCAGCCAGTCCAGGTTCCAGTGACTTTGGTCCGAAATGACGGGGTCATTTACTCCACCAGCCTTACCTTCACCTACACACCAGAGCCAGGGCCGAGGCCACACTGCAGCGCTGCAGGAGCGATTCTCAGAGCCAACTCCAGCCAAGTGCCCTCCAATGAGTCAAACACAAACAGCGAGGGGAattacacaaatgccagcacaaaTTCTACCAGTGTCACATCGTCCACAGCAACCGTGGTGTCCTAACTACCGTCTTTTTGCTGGGACTGAAACTGACTTGAATGCAGCAAAAAGTTGACAGAGAAAGGCAAGGATAAAGTGAACAATCTTTTGTGGTTTCTTGGGGAAACGTTTCGTACCAGGTGATCTATTCAAAACTGCCAGTGCAGGTGTGACATGCAGAGGCCACAGTACAATGAACAACATCAGAATGCACAGGCTGATGGAAATCCAGGTTTTCAGCTGTCCCTCTCACACGCACccctttttggttgttttggtttggttttgatttaatGGCCAGGAAACAGatatgtggctggagcacaggctAAGCTAGAAGACACAAACCTAACATAGACTTATGGACCAAGGGACTCGCATAAGCTTTAGTGAAAGGTACATTTTCACCATGCCTTTTTTATATCACAGTGTGTACTACACCTTGTTACCAAACAGGTTGCGCTCCCCACCCTTTGAGGGTTGGCTCTAAAGTACATTCATTCAGGTTCGAGCCTCACCATGTTTGTTCAGTCTGAACACTGAACACTTCCAGGTTCTTGTGGTCTAAGGCTGGAACTTTTTTAAGCTGAAGTCTTATGACTTTTTCATAAGTTGGAATTATTTTGATTTCAGCAAGTCAAATTTTGTAAAGGCCtgcatattttttttaagattatatgaAGTCTGCAAAAGCTTTAAAAATGCCTCTGCCTTGCCTGCAATACATGCAATGTGTGTTAACTGAGTCTGTTCTCAGAATCTGTTGGTAGTTATTTCtgtgttttccctttttttaaagaaatgtatttatagTGGTAATCTAAGAGATGCTAACAGCTCCGTGTGGCCATTTAGCCCTTTCTGAGTTCATGGCAGTGAGCACTGCCGTTCGAAGGCTGTGCGCCTCTGCCTGTTCATCAGTTCATCTGTGTTCCAGGATTTGTTCAGGTTTCCCCTTCCCCCAAATCTTGTACATAACTTGTATTAtgtgtaagttaaacattttaTCTTTACTTGGAATGTTCCCAGTGATTACATTTCACAGGGTGTTTCCCACCTTGTTGGCAAATGACAAAAAATATCATGCGAATTATTTGCTACCAAGATGGTGCCCGTAGGGTAAAATGAGGAACATCTCTGCAGGATGATTTAttgtatgttttcctttttttttagccTAGCCAGAACATCATTATAATTTTAAAGACCATAAGATGGCTTTTATTAGATGATAACTAAATAAACTGAACTAAGTAGCCAGAAGACAGTACCTTAGAGACTGATAGTTGTAagtttataaaaatacaaatgtaacttatatttccattttcctcTTTGCCCCTTTGTTTATTTTCCCCAGTAGAAATGTTCtgtccagatttttttccccctttttagtTAAGCCTTGCTTGCATTCAGGCTTGTGTGTCAGCCCTGTGTGCCAATATGCCAGATTCATTTTGTTTCCATCCCTGCACTTTGGTTATTCCTTGTTCAGTTTCTTGGGAATTGAAGCAGACTCATTGGGCTACATTTAGTACAAGAACCACATGTGTGATGTTAAAGGACACAGTCTAGTGATGCCATCATCCTTGAGTAAAAACTACCTCTAGATTGTGGTAAGCTTTTACTGTCCCTTAAAACAGGAGCCACTAGTACCTTATGAATGCAGACTGTAACTTCTATGGCATTTTCTGGTGTCTTtctggctctctgggcttctgAAAGTTTTCACGTAGACCCTTAGACTCCTCTGTCAGGACCATTGCTTTCCAGCGTTGCTGCTTTCACTCGCTGTCTCGAAGACTGTACCACTGTAAGTGCCACTGCGAACATCTTTAAACGGCTCCTCCTTGGCTTGTCAAGGGGAAGGCCACCTGTAAGATGTGGTGGTGACAGCCTTCCTGTCCACCCCAGGCTGCTCCTTACCAGCTGTTCTAGCCGATTCTCTTCAGATCAGCTACAGCCCACCTCCTCCCCGCCCCGCCTCACCCCTCCAGGCTGTCTCAGTGGTCCAGGGCAGAGCTCACTGTGGCCTTACTGATCTATCTCTGCAGTAACTGTTCTCCCTCAGTTGCGATGGAAGCAGGCCCCTGCGATCTGTTCAGAGCCTGAGCAGTTTGCAGTTCCGTTGTGCTTTCTGAGGTCCTAGATTCAGGATGTAGTTAAGTCGATAACTGAGAACAGATGAGATGCTTTTAAAGAACAAACTCTTCCTTACCCAGCTTTGTAGCTTAAAGTAAGTTTTCAAGTTCATGGCTTTATTAAAATGaactttgactttttaaaatgcttataTCTCATTTcggttcttttgtttattttagtaaGAATTGAAACAGACTATAAGtagttttcctgtttgtttgtttgtttgtttgttttttacaaagtTCAAGAATGTAACAATAAAGGCATTTTGCTATGGTTCTATGTCAGACTCCTACCACAGAATAGTGTGAACAGATATGTCTGTCTGCTTTACCATGTTATTGATAGTTCTTTTGTCAGCTGCTTTTATTAAAAGTCCTCTTTTGTGAATTTGTAAATCAATTTCAATATATGATGTACAGGAGTCTTGTCCCCCGTTACTGTGGAATGTTCCCCCCTGTTGATGCTGGTCCCTTTATCCTCTTATCTTCTTAGAACCGGGAATTCTTCAGTTGTGGTGTGTGGCTGTATTTTTCTATTCTGTTTACAGTGCGTCTACACAGCTTCTTAAAACATGTCGAAATGCAGAATCCAAGATCCACCATGAATTTGTCAAGAGATTGGAAGGCAGGCCAAAACCTGAAAATGTGGGGTGCCCTTTGTACAATTGCAGAGTCAAGCACTAGTGGGAGTTTGAACTGGCTACTGACCGCTCTTAAACTGTGGCAGTGTCCTTGGGTACAGTTAACTAGCAGAACCTGCTGTCACTCTTCCTGCCACCATCTTAACCTTgacagttttgtttcttttctgtgtggTGCTGGGGTCAAATCCAGAGCCTTAGGCTTGCtaaggctttttgtttgtttgatttttccttGAGACAAGTGTCTCACCCATGGAGCCCCTCAGCATTCTTGAAAGTCTCTGCCTTAGCCTCCAGGTCCTGTGGTACCAGGTGTGGCAGGATGCTTTTGTCATTAGAGAAACTGGTCTGTGTCCAACCACAGAAAAATTCCAATGCAGTTTTTAATAATTAATCCACTAGTTATTTAATCAAAATCTTTTTGTAGGGAGAGattcctgtttgaaagaaaatgCTATTTGATTATTAACCAAGGTAACAGACACTGCTTTCCAAAGCAGCTGTGTTTCTGGTGAGTACTGAAcaaatgtgtggttttctgtgCCACCTTTGATTCATTTTTCAAGCACTGTTACTCGGGATGGATGGTTAGAAACATGATATTTTAGTGTTTCTACTTAACCCTTTCAGGACCGAGCTGTATTGCCTTTCTATTAATTTCCCCCTGTGTTGTGATAAATGTTTGCTCGTGTTCAGTCCTGTGTCAGTCCAGACGTAGGTTTGTGTAAAAGCTCAGTTGTAGCTTATTTCTTGTACCTTGCAGCATGTTCTACGCATCCAGTCCTTAAGGGGTTTACTCTACAAACTGTGCACCTGCGTGTAAGGGTCATTAGCAATAAGATAGAAAATTGAGCAAGTTTATACCATAATTTTGTAGAAAAAGGAATCTGCTCAATTCCATATTTCATCCATGAAAACTCTGCAATACGGGCAGTTTCtaggaataaataaaaaggagatgCAAACCATTGTAGATGTCTTCTGTGGGATGTGCCCGATGCGTGCATCATCGTCTTTGATTCCAGGTACTtcataaagataaaattaaattc 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