| Retrocopy Name | RbpjP2 | 
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| Species | Mus musculus | |
| Coordinates | chr6:46503867-46507818 UCSC | |
| Strand | - | |
| Parental Sequence | NM_001080928.1 | |
| Parental seq. overlap | 3801 bp | |
| Parental seq. overlap (%) | 70.5% | |
| Genomic Region | 
									Intragenic (Cntnap2) | 
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| Retrocopy Summary | RbpjP2, located on chr6:46503867-46507818, is a retrocopy of the parental gene Rbpj. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. | 
| Gene Name | Rbpj | 
| Full Name | recombination signal binding protein for immunoglobulin kappa J region | 
| Also known as | CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh | 
| Coordinate | chr5:53713121-53814787 | 
| Strand | + | 
| Gene summary | Enables several functions, including DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and protein N-terminus binding activity. Involved in several processes, including circulatory system development; positive regulation of signal transduction; and regulation of transcription by RNA polymerase II. Acts upstream of or within several processes, including animal organ development; blood vessel morphogenesis; and regulation of transcription, DNA-templated. Located in nucleus. Part of transcription regulator complex. Is expressed in several structures, including early conceptus; genitourinary system; neural ectoderm; paraxial mesenchyme; and retina. Used to study aortic valve disease. Human ortholog(s) of this gene implicated in Adams-Oliver syndrome and dilated cardiomyopathy. Orthologous to human RBPJ (recombination signal binding protein for immunoglobulin kappa J region). [provided by Alliance of Genome Resources, Apr 2022] | 
| Species | Scientific Name | Retrocopy | |
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			Human | Homo sapiens | Without Homology | 
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			Chimpanzee | Pan troglodytes | Without Homology | 
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			Bonobo | Pan paniscus | Without Homology | 
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			Gorilla | Gorilla gorilla | Without Homology | 
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			Orangutan | Pongo abelii | Without Homology | 
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			Gibbon | Nomascus leucogenys | Without Homology | 
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			Green monkey | Chlorocebus sabaeus | Without Homology | 
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			Crab-eating macaque | Macaca fascicularis | Without Homology | 
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			Rhesus | Macaca mulatta | Without Homology | 
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			Baboon | Papio anubis | Without Homology | 
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			Golden snub-nosed monkey | Rhinopithecus roxellana | Without Homology | 
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			Marmoset | Callithrix jacchus | Without Homology | 
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			Mouse lemur | Microcebus murinus | Without Homology | 
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			Rat | Rattus norvegicus | Without Homology | 
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			Chinese hamster | Cricetulus griseus | Without Homology | 
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			Rabbit | Oryctolagus cuniculus | Without Homology | 
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			Pig | Sus scrofa | Without Homology | 
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			Cow | Bos taurus | Without Homology | 
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			Sheep | Ovis aries | Without Homology | 
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			Dolphin | Tursiops truncatus | Without Homology | 
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			Horse | Equus caballus | Without Homology | 
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			Dog | Canis familiaris | Without Homology | 
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			Panda | Ailuropoda melanoleuca | Without Homology | 
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			Cat | Felis catus | Without Homology | 
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			Pale spear-nosed bat | Phyllostomus discolor | Without Homology | 
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			Velvety free-tailed bat | Molossus molossus | Without Homology | 
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			Greater mouse-eared bat | Myotis myotis | Without Homology | 
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			Kuhl's pipistrelle | Pipistrellus kuhlii | Without Homology | 
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			Greater horseshoe bat | Rhinolophus ferrumequinum | Without Homology | 
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			Egyptian rousette | Rousettus aegyptiacus | Without Homology | 
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			Sloth | Choloepus didactylus | Without Homology | 
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			Tasmanian Devil | Sarcophilus harrisii | Without Homology | 
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			Opossum | Monodelphis domestica | Without Homology | 
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			Platypus | Ornithorhynchus anatinus | Without Homology | 
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			Chicken | Gallus gallus | Without Homology | 
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			Turkey | Meleagris gallopavo | Without Homology | 
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			Zebra Finch | Taeniopygia guttata | Without Homology | 
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			Budgerigar | Melopsittacus undulatus | Without Homology | 
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			Painted Turtle | Chrysemys picta | Without Homology | 
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			Lizard | Anolis Carolinensis | Without Homology | 
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			Frog | Xenopus tropicalis | Without Homology | 
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			Zebrafish | Danio rerio | Without Homology | 
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			Drosophila | Drosophila melanogaster | Without Homology | 
| >RbpjP2 | 
| GCCTATAGGAAGTTTGGTGAGCGGCCTCCACCCAAACGACTCACTAGGGAAGCTATGCGAAATTATTTAAAAGAACGAGGGGATCAAACAGTGCTCATTCTTCATGCAAAAGTTGCACAGAAGTCTTACGGAAATGAAAAACGATTTTTTTGCCCTCCTCCTTGTGTGTATCTTATGGGCAGtggttggaagaaaaaaaaagagcaaatggAACGAGATGGATGTTCTGAACAAGAGTCTCAACCCTGTGCGTTTATTGGAATAGGAAACAGTGACCAAGAAATGCAGCAGCTGAACTTGGAAGGGAAGAACTACTGCACAGCCAAAACATTGTACATATCTGATTCAGACAAGAGAAAACATTTCATGTTGTCTGTAAAGATGTTCTATGGCAACAGCGATGACATTGGTGTGTTCCTCAGCAAGCGGATAAAGGTCATCTCCAAACCCTCCAAAAAGAAGCAGTCACTGAAGAATGCTGACTTGTGCATTGCTTCAGGAACGAAGGTGGCACTGTTCAATCGCCTTCGGTCCCAGACAGTTAGTACCAGGTACCTGCATGTAGAAGGAGGGAATTTCCACGCCAGTTCACAACAGTGGGGAGCATTTTACATCCATCTCTTGGACGACGACGAGTCGGAAGGAGAGGAGTTCACAGTTAGAGATGGCTACATCCATTACGGGCAGACTGTCAAGCTTGTGTGCTCAGTGACTGGCATGGCACTCCCAAGATTGATAATTAGGAAAGTTGATAAGCAGACGGCATTACTGGATGCAGACGACCCTGTATCACAACTCCACAAATGTGCATTTTACCTTAAGGATACAGAAAGAATGTACTTGTGCCTTTCTCAAGAAAGAATAATCCAATTTCAGGCCACTCCATGtccaaaagaacaaaataaggAAATGATAAACGATGGAGCTTCCTGGACAATCATTAGCACAGACAAGGCAGAATACACGTTCTATGAGGGAATGGGCCCCGTCCTTGCCCCAGTCACCCCTGTGCCTGTCGTAGAAAGTCTTCAGTTGAATGGCGGCGGGGACGTAGCAATGCTTGAACTTACAGGACAAAACTTTACTCCAAATTTACGAGTGTGGTTTGGGGATGTAGAAGCCGAAACAATGTACAGATGTGGAGAGAGCATGCTCTGTGTGGTCCCAGACATTTCTGCATTCCGGGAAGGTTGGAGATGGGTCCGCCAGCCAGTCCAGGTTCCAGTGACTTTGGTCCGAAATGACGGGGTCATTTACTCCACCAGCCTTACCTTCACCTACACACCAGAGCCAGGGCCGAGGCCACACTGCAGCGCTGCAGGAGCGATTCTCAGAGCCAACTCCAGCCAAGTGCCCTCCAATGAGTCAAACACAAACAGCGAGGGGAattacacaaatgccagcacaaaTTCTACCAGTGTCACATCGTCCACAGCAACCGTGGTGTCCTAACTACCGTCTTTTTGCTGGGACTGAAACTGACTTGAATGCAGCAAAAAGTTGACAGAGAAAGGCAAGGATAAAGTGAACAATCTTTTGTGGTTTCTTGGGGAAACGTTTCGTACCAGGTGATCTATTCAAAACTGCCAGTGCAGGTGTGACATGCAGAGGCCACAGTACAATGAACAACATCAGAATGCACAGGCTGATGGAAATCCAGGTTTTCAGCTgtccctctcacacacacccctttaatGGCCAGGAAACAGatatgtggctggagcacaggctAAGCTAGAAGACACAAACCTAACATAGACTTATGGACCAAGGGACTCGCATAAGCTTTAGTGAAAGGTACATTTTCACCATGCCTTTTTTATATCACAGTGTGTACTACACCTTGTTACCAAACAGGTTGCGCTCCCCACCCTTTGAGGGTTGGCTCTAAAGTACATTCAGGTTCGAGCCTCACCATGTTTGTTCAGTCTGAACACTGAACACTTCCAGGTTCTTGTGGTCTAAGGCTGGAACTTTTTTAAGCTGAAGTCTTATGACTTTTTCATAAGTTGGAATTATTTTGATTTCAGCAAGTCAAATTTTGTAAAGGCCtgcatattttttttaagattatatgaAGTCTGCAAAAGCTTTAAAAATGCCTCTGCCTTGCCTGCAATACATGCAATGTGTGTTAACTGAGTCTGTTCTCAGAATCTGTTGGTAGTTATTTCtgtgttttccctttttttaaagaaatgtatttatagTGGTAATCTAAGAGATGCTAACAGCTCCGTGTGGCCATTTAGCCCTTTCTGAGTTCATGGCAGTGAGCACCGCCGTTCGAAGGCTGTGCGCCTCTGCCTGTTCATCAGTTCATCTGTGTTCCAGGATTTGTTCAGGTTTCCCCTTCCCCCAAATCTTGTACATAACTTGTATTAtgtgtaagttaaacattttaTCTTTACTTGGAATGTTCCCAGTGATTACATTTCACAGGGTGTTTCCCACCTTGTTGGCAAATGACAAAAAATATCATGCGAATTATTTGCTACCAAGATGGTGCCCGTAGGGTAAAATGAGGAACATCTCTGCAGGATGATTTattgtatgtttttctttttttttagcctAGCCAGAACATCATTATAATTTTAAAGACCATAAGATGGCTTTTATTAGATGATAACTAAATAAACTGAACTAAGTAGCCAGAAGACAGTACCTTAGAGACTGATAGTTGTAagtttataaaaatacaaatgtaacttatatttccattttcctcTTTGCCCCTTTGTTTATTTTCCCCAGTAGAAATGTTCTgtccagattttttttcccctttttagtTAAGCCTTGCTTGCATTCAGGCTTGTGTGTCAGCCCTGTGTGCCAATATGCCAGATTCATTTTGTTTCCATCCCTGCACTTTGGTTATTCCTCGTTCAGTTTCTTGGGAATTGAAGCAGACTCATTGGGCTACATTTAGTACAAGAACCACATGTGTGATGTTAAAGGACACAGTCTAGTGATGCCATCATCCTTGAGTAAAAACTACCTCTAGATTGTGGTAAGCTTTTACTGTCCCTTAAAACAGGAGCCACTAGTACCTTACGAATGCAGACTGTAACTTCTATGGCATTTTCTGGTGTCTTtctggctctctgggcttctgAAAGTTTTCACGTAGACCCTTAGACTCCTCTGTCAGGACCATTGCTTTCCAGCGTTGCTGCTTTCACTCGCTGTCTCGCAGACTGTACCACTGTAAGTGCCACTGCAAACATCTTTAAACGGCCTCCTCCTTGGCTTGTCAAGGGGAAGGCCACCTGTAAGATGTGGTGGTGACAGCCTTCCTGTCCACCCCAGGCTGCTCCTTACCAGCTGTTCTAGCCGATTCTCTTCAGATCAGCTACAGCCCACCTCCTCCCCGCCCCGCCTCACCCCTCCAGGCTGTCTCAGTGGTCCAGGGCAGAGCTCACTGTGGCCTTACTGATCTATCTCTGCAGTAACTGTTCTCCCTCAGTTGCGATGGAAGCAGGCCCCTGCGATCTGTTCAGAGCCTGAGCAGTTTGCAGTTCCGTTGTGCTTTCTGAGGTCCTAGATTCAGGATGTAGTTAAGTCGATAACTGAGAACAGATGAGATGCTTTTAAAGAACAAACTCTTCCTTACCCAGCTTTGTAGCTTAAAGTAAGTTTTCAAGTTCATGGCTTTATTAAAATGaactttgactttttaaaatgcttataTCTCATTTcggttcttttgtttattttagtaaGAATTGAAACAGACTATAAGtagttttccttttacaaagtTCAAGAATGTAACAATAAAGGCATTTTGCTATGGTtctatgtcagaa | 
| >NM_001080928.1 | 
| CCTTCAAGATATCCAGCAAGTTGAGACTGGGTCCCACTCTGTAGCTCCGGCTGCTGTGGAATTTACAGCATAGCCCAGAACTCGAGGCGTCTGCTTAACCCGGCTTCTCAAATGTTGGCCTATAGGAAGTTTGGTGAGCGGCCTCCACCCAAACGACTCACTAGGGAAGCTATGCGAAATTATTTAAAAGAACGAGGGGATCAAACAGTGCTCATTCTTCATGCAAAAGTTGCACAGAAGTCTTACGGAAATGAAAAACGattTTTTTGCCCTCCTCCTTGTGTGTATCTTATGGGCAGtggttggaagaaaaaaaaagagcaaatggAACGAGATGGATGTTCTGAACAAGAGTCTCAACCCTGTGCGTTTATTGGAATAGGAAACAGTGACCAAGAAATGCAGCAGCTGAACTTGGAAGGGAAGAACTACTGTACAGCCAAAACATTGTACATATCTGATTCAGACAAGAGAAAACATTTCATGTTGTCTGTAAAGATGTTCTATGGCAACAGCGATGACATTGGTGTGTTCCTCAGCAAGCGGATAAAGGTCATCTCCAAACCCTCCAAAAAGAAGCAGTCACTGAAGAATGCTGACTTGTGCATTGCTTCAGGAACGAAGGTGGCACTGTTCAATCGCCTTCGGTCCCAGACAGTTAGTACCAGGTACCTGCATGTAGAAGGAGGGAATTTCCACGCCAGTTCACAACAGTGGGGAGCATTTTACATCCATCTCTTGGACGACGACGAGTCGGAAGGAGAGGAGTTCACAGTTAGAGATGGCTACATCCATTACGGGCAGACTGTCAAGCTTGTGTGCTCAGTGACTGGCATGGCACTCCCAAGATTGATAATTAGGAAAGTTGATAAGCAGACGGCATTACTGGATGCAGACGACCCTGTATCACAACTCCACAAATGTGCATTTTACCTTAAGGATACAGAAAGAATGTACTTGTGCCTTTCTCAAGAAAGAATAATCCAATTTCAGGCCACTCCATGtccaaaagaacaaaataaggAAATGATAAACGATGGAGCTTCCTGGACAATCATTAGCACAGACAAGGCCGAGTACACGTTCTATGAGGGAATGGGCCCCGTCCTTGCCCCAGTCACCCCTGTGCCTGTCGTAGAAAGTCTTCAGTTGAATGGCGGCGGGGACGTAGCAATGCTTGAACTTACAGGACAAAACTTTACTCCAAATTTAAGAGTGTGGTTTGGGGATGTAGAAGCCGAAACAATGTACAGatgtggagagaGCATGCTCTGTGTGGTCCCAGACATTTCTGCATTCCGGGAAGGTTGGAGATGGGTCCGCCAGCCAGTCCAGGTTCCAGTGACTTTGGTCCGAAATGACGGGGTCATTTACTCCACCAGCCTTACCTTCACCTACACACCAGAGCCAGGGCCGAGGCCACACTGCAGCGCTGCAGGAGCGATTCTCAGAGCCAACTCCAGCCAAGTGCCCTCCAATGAGTCAAACACAAACAGCGAGGGGAattacacaaatgccagcacaaaTTCTACCAGTGTCACATCGTCCACAGCAACCGTGGTGTCCTAACTACCGTCTTTTTGCTGGGACTGAAACTGACTTGAATGCAGCAAAAAGTTGACAGAGAAAGGCAAGGATAAAGTGAACAATCTTTTGTGGTTTCTTGGGGAAACGTTTCGTACCAGGTGATCTATTCAAAACTGCCAGTGCAGGTGTGACATGCAGAGGCCACAGTACAATGAACAACATCAGAATGCACAGGCTGATGGAAATCCAGGTTTTCAGCTGTCCCTCTCACACGCACccctttttggttgttttggtttggttttgatttaatGGCCAGGAAACAGatatgtggctggagcacaggctAAGCTAGAAGACACAAACCTAACATAGACTTATGGACCAAGGGACTCGCATAAGCTTTAGTGAAAGGTACATTTTCACCATGCCTTTTTTATATCACAGTGTGTACTACACCTTGTTACCAAACAGGTTGCGCTCCCCACCCTTTGAGGGTTGGCTCTAAAGTACATTCATTCAGGTTCGAGCCTCACCATGTTTGTTCAGTCTGAACACTGAACACTTCCAGGTTCTTGTGGTCTAAGGCTGGAACTTTTTTAAGCTGAAGTCTTATGACTTTTTCATAAGTTGGAATTATTTTGATTTCAGCAAGTCAAATTTTGTAAAGGCCtgcatattttttttaagattatatgaAGTCTGCAAAAGCTTTAAAAATGCCTCTGCCTTGCCTGCAATACATGCAATGTGTGTTAACTGAGTCTGTTCTCAGAATCTGTTGGTAGTTATTTCtgtgttttccctttttttaaagaaatgtatttatagTGGTAATCTAAGAGATGCTAACAGCTCCGTGTGGCCATTTAGCCCTTTCTGAGTTCATGGCAGTGAGCACTGCCGTTCGAAGGCTGTGCGCCTCTGCCTGTTCATCAGTTCATCTGTGTTCCAGGATTTGTTCAGGTTTCCCCTTCCCCCAAATCTTGTACATAACTTGTATTAtgtgtaagttaaacattttaTCTTTACTTGGAATGTTCCCAGTGATTACATTTCACAGGGTGTTTCCCACCTTGTTGGCAAATGACAAAAAATATCATGCGAATTATTTGCTACCAAGATGGTGCCCGTAGGGTAAAATGAGGAACATCTCTGCAGGATGATTTAttgtatgttttcctttttttttagccTAGCCAGAACATCATTATAATTTTAAAGACCATAAGATGGCTTTTATTAGATGATAACTAAATAAACTGAACTAAGTAGCCAGAAGACAGTACCTTAGAGACTGATAGTTGTAagtttataaaaatacaaatgtaacttatatttccattttcctcTTTGCCCCTTTGTTTATTTTCCCCAGTAGAAATGTTCtgtccagatttttttccccctttttagtTAAGCCTTGCTTGCATTCAGGCTTGTGTGTCAGCCCTGTGTGCCAATATGCCAGATTCATTTTGTTTCCATCCCTGCACTTTGGTTATTCCTTGTTCAGTTTCTTGGGAATTGAAGCAGACTCATTGGGCTACATTTAGTACAAGAACCACATGTGTGATGTTAAAGGACACAGTCTAGTGATGCCATCATCCTTGAGTAAAAACTACCTCTAGATTGTGGTAAGCTTTTACTGTCCCTTAAAACAGGAGCCACTAGTACCTTATGAATGCAGACTGTAACTTCTATGGCATTTTCTGGTGTCTTtctggctctctgggcttctgAAAGTTTTCACGTAGACCCTTAGACTCCTCTGTCAGGACCATTGCTTTCCAGCGTTGCTGCTTTCACTCGCTGTCTCGAAGACTGTACCACTGTAAGTGCCACTGCGAACATCTTTAAACGGCTCCTCCTTGGCTTGTCAAGGGGAAGGCCACCTGTAAGATGTGGTGGTGACAGCCTTCCTGTCCACCCCAGGCTGCTCCTTACCAGCTGTTCTAGCCGATTCTCTTCAGATCAGCTACAGCCCACCTCCTCCCCGCCCCGCCTCACCCCTCCAGGCTGTCTCAGTGGTCCAGGGCAGAGCTCACTGTGGCCTTACTGATCTATCTCTGCAGTAACTGTTCTCCCTCAGTTGCGATGGAAGCAGGCCCCTGCGATCTGTTCAGAGCCTGAGCAGTTTGCAGTTCCGTTGTGCTTTCTGAGGTCCTAGATTCAGGATGTAGTTAAGTCGATAACTGAGAACAGATGAGATGCTTTTAAAGAACAAACTCTTCCTTACCCAGCTTTGTAGCTTAAAGTAAGTTTTCAAGTTCATGGCTTTATTAAAATGaactttgactttttaaaatgcttataTCTCATTTcggttcttttgtttattttagtaaGAATTGAAACAGACTATAAGtagttttcctgtttgtttgtttgtttgtttgttttttacaaagtTCAAGAATGTAACAATAAAGGCATTTTGCTATGGTTCTATGTCAGACTCCTACCACAGAATAGTGTGAACAGATATGTCTGTCTGCTTTACCATGTTATTGATAGTTCTTTTGTCAGCTGCTTTTATTAAAAGTCCTCTTTTGTGAATTTGTAAATCAATTTCAATATATGATGTACAGGAGTCTTGTCCCCCGTTACTGTGGAATGTTCCCCCCTGTTGATGCTGGTCCCTTTATCCTCTTATCTTCTTAGAACCGGGAATTCTTCAGTTGTGGTGTGTGGCTGTATTTTTCTATTCTGTTTACAGTGCGTCTACACAGCTTCTTAAAACATGTCGAAATGCAGAATCCAAGATCCACCATGAATTTGTCAAGAGATTGGAAGGCAGGCCAAAACCTGAAAATGTGGGGTGCCCTTTGTACAATTGCAGAGTCAAGCACTAGTGGGAGTTTGAACTGGCTACTGACCGCTCTTAAACTGTGGCAGTGTCCTTGGGTACAGTTAACTAGCAGAACCTGCTGTCACTCTTCCTGCCACCATCTTAACCTTgacagttttgtttcttttctgtgtggTGCTGGGGTCAAATCCAGAGCCTTAGGCTTGCtaaggctttttgtttgtttgatttttccttGAGACAAGTGTCTCACCCATGGAGCCCCTCAGCATTCTTGAAAGTCTCTGCCTTAGCCTCCAGGTCCTGTGGTACCAGGTGTGGCAGGATGCTTTTGTCATTAGAGAAACTGGTCTGTGTCCAACCACAGAAAAATTCCAATGCAGTTTTTAATAATTAATCCACTAGTTATTTAATCAAAATCTTTTTGTAGGGAGAGattcctgtttgaaagaaaatgCTATTTGATTATTAACCAAGGTAACAGACACTGCTTTCCAAAGCAGCTGTGTTTCTGGTGAGTACTGAAcaaatgtgtggttttctgtgCCACCTTTGATTCATTTTTCAAGCACTGTTACTCGGGATGGATGGTTAGAAACATGATATTTTAGTGTTTCTACTTAACCCTTTCAGGACCGAGCTGTATTGCCTTTCTATTAATTTCCCCCTGTGTTGTGATAAATGTTTGCTCGTGTTCAGTCCTGTGTCAGTCCAGACGTAGGTTTGTGTAAAAGCTCAGTTGTAGCTTATTTCTTGTACCTTGCAGCATGTTCTACGCATCCAGTCCTTAAGGGGTTTACTCTACAAACTGTGCACCTGCGTGTAAGGGTCATTAGCAATAAGATAGAAAATTGAGCAAGTTTATACCATAATTTTGTAGAAAAAGGAATCTGCTCAATTCCATATTTCATCCATGAAAACTCTGCAATACGGGCAGTTTCtaggaataaataaaaaggagatgCAAACCATTGTAGATGTCTTCTGTGGGATGTGCCCGATGCGTGCATCATCGTCTTTGATTCCAGGTACTtcataaagataaaattaaattc 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