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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC100455435P2
Plot displaying the genomic locations of a retrocopy (in chr3) and its respective parental gene (in chr11_NW_019937276v1_random). Each line represents a retrocopy.
Species Pongo abelii
Coordinates chr3:108313584-108313748  UCSC
Strand +
Parental Sequence XM_009245970.2
Parental seq. overlap 142 bp
Parental seq. overlap (%) 21%
Genomic Region Intergenic
Retrocopy Summary LOC100455435P2, located on chr3:108313584-108313748, is a retrocopy of the parental gene LOC100455435. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC100455435
Full Name N/A
Also known as -
Coordinate chr11_NW_019937276v1_random:198162-199401
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens IFITM1P1
Chimpanzee Pan troglodytes IFITM1P2
Bonobo Pan paniscus IFITM1P2
Gorilla Gorilla gorilla IFITM1P1
Gibbon Nomascus leucogenys LOC100594097P2
Green monkey Chlorocebus sabaeus IFITM3P2
Crab-eating macaque Macaca fascicularis LOC102115008P1
Rhesus Macaca mulatta LOC720763P1
Baboon Papio anubis LOC101000441P2
Golden snub-nosed monkey Rhinopithecus roxellana LOC104655295P1
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC100455435P2
GTCCACCGTGATCCACAACCACAGTGACACCGCCATGTCTGACCATGTTGTCTGGTCCCTGTTCAACTCGCTCTTCATTGAACTGATGCTGCCTGAGCTTCTTAGCACTCACCTACTCTGTGAAATCTAGGGACAGGAAGATGGTTGGCAACCTGACTGGGGCCC
>XM_009245970.2
ATTTGACAAACGCCAGGAAGAGGAAACTGTTGAGAAAACGGAAACTACTGGGGAAAGGGAGGGCTGACTGAGAACCATCCCAGTAACCCGACCACCGCTGGTCTTCGCTGGACACCATGAACCACACTGTCCAAACCTTCTCTCCTGTCAACAGCAGCCAGCCCCCCAACTACGAGATGCTCAAGGAGGAGCACGAGGTGGCTATGCTGGGGGCGCCCCACAACCCTGCTCCCCCGACATCCACCGTGATCCACATCCGCAGCGAGACCTCCGTGCCCGACCATGTTGTCTGGTCCCTGTTCAACACCCTCTTCATGAACCCCTGCTGCCTGGGCTTCATAGCATTCGCCTACTCTGTGAAGTCTAGGGACAGGAAGATGGTTGGCGACATGACCGGGGCCCAGGCGTATGCCTCCACCGCCAAGTGCCTGAACATCTGGGCCCTGATTCTGGGCATCCTCATGACCATTCTGCTCATCGTCATCCCAGTGTTGATCGTCCAGGCCCATCGATAGATCAGGAGGCATCATTGAGGCCAGGAGCTCTGCCCATGACCTGTATCCCACATACTCCACCTTCCATTCTTCGCCCTGCCCCCGGAGCCGCGTCCTGTATCAGCCCTTTATCCTCACACACTTTTCTACAATGGCATTCAATAAAGTGTATATGTTTCC

Publications

PMID - Link Title