Retrocopy Name | CtshP1 |
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Species | Mus musculus | |
Coordinates | chrX:76333229-76334462 UCSC | |
Strand | - | |
Parental Sequence | NM_007801.3 | |
Parental seq. overlap | 1078 bp | |
Parental seq. overlap (%) | 66.1% | |
Genomic Region |
Intergenic |
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Retrocopy Summary | CtshP1, located on chrX:76333229-76334462, is a retrocopy of the parental gene Ctsh. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
Gene Name | Ctsh |
Full Name | cathepsin H |
Also known as | - |
Coordinate | chr9:89936320-89958148 |
Strand | + |
Gene summary | This gene encodes a member of the peptidase C1 (papain) family of cysteine proteases. Alternative splicing results in multiple transcript variants, at least one of which encodes a preproprotein that is proteolytically processed to generate multiple protein products. These products include the cathepsin H mini, heavy, and light chains. In rat and human, these three chains can associate to form the mature enzyme, which has both aminopeptidase and endopeptidase activities. Homozygous knockout mice for this gene exhibit impaired lung surfactant processing and reduced tumorigenesis in a pancreatic cancer model. Multiple pseudogenes of this gene have been identified in the genome. [provided by RefSeq, Aug 2015] |
Species | Scientific Name | Retrocopy | |
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Human | Homo sapiens | Without Homology |
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Chimpanzee | Pan troglodytes | Without Homology |
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Bonobo | Pan paniscus | Without Homology |
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Gorilla | Gorilla gorilla | Without Homology |
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Orangutan | Pongo abelii | Without Homology |
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Gibbon | Nomascus leucogenys | Without Homology |
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Green monkey | Chlorocebus sabaeus | Without Homology |
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Crab-eating macaque | Macaca fascicularis | Without Homology |
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Rhesus | Macaca mulatta | Without Homology |
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Baboon | Papio anubis | Without Homology |
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Golden snub-nosed monkey | Rhinopithecus roxellana | Without Homology |
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Marmoset | Callithrix jacchus | Without Homology |
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Mouse lemur | Microcebus murinus | Without Homology |
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Rat | Rattus norvegicus | Without Homology |
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Chinese hamster | Cricetulus griseus | Without Homology |
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Rabbit | Oryctolagus cuniculus | Without Homology |
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Pig | Sus scrofa | Without Homology |
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Cow | Bos taurus | Without Homology |
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Sheep | Ovis aries | Without Homology |
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Dolphin | Tursiops truncatus | Without Homology |
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Horse | Equus caballus | Without Homology |
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Dog | Canis familiaris | Without Homology |
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Panda | Ailuropoda melanoleuca | Without Homology |
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Cat | Felis catus | Without Homology |
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Pale spear-nosed bat | Phyllostomus discolor | Without Homology |
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Velvety free-tailed bat | Molossus molossus | Without Homology |
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Greater mouse-eared bat | Myotis myotis | Without Homology |
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Kuhl's pipistrelle | Pipistrellus kuhlii | Without Homology |
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Greater horseshoe bat | Rhinolophus ferrumequinum | Without Homology |
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Egyptian rousette | Rousettus aegyptiacus | Without Homology |
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Sloth | Choloepus didactylus | Without Homology |
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Tasmanian Devil | Sarcophilus harrisii | Without Homology |
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Opossum | Monodelphis domestica | Without Homology |
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Platypus | Ornithorhynchus anatinus | Without Homology |
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Chicken | Gallus gallus | Without Homology |
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Turkey | Meleagris gallopavo | Without Homology |
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Zebra Finch | Taeniopygia guttata | Without Homology |
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Budgerigar | Melopsittacus undulatus | Without Homology |
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Painted Turtle | Chrysemys picta | Without Homology |
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Lizard | Anolis Carolinensis | Without Homology |
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Frog | Xenopus tropicalis | Without Homology |
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Zebrafish | Danio rerio | Without Homology |
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Drosophila | Drosophila melanogaster | Without Homology |
>CtshP1 |
gctcAGAGGGCACTCAGTGGGACCCGGCAGTAAGCACGGCAATGTGCGCTGCGCTGCCACCACTCTGGACAGGGCCTGGCTGCTGAGAATGCAGGCCAACGCTGAGCTGACAGTCAACGCCACAGAAAAATTTCACTTTAAGTCATGGACAAAACAGCATCAAAAGACGTACAGCTTAGAGGAGTAAAACCATAGGCTGCAGATGTTTGCCAACAACTGGAGGAAGATTCATGACCACAACCAGAGGAACCACACATTTAAATTTGTGTTGAACCAGTTTTCAGATATGAGCTTTgctgaaataaaacacaaatatttctGGTCAGAGCCTCAGAACTGCTCAGCCACCAAAAGTAACTGTCTCCGTGGTACTGGCCCCTACCCTGCCTCCGTGGAATGTCTGAAGAAAGGAAGTGTTGTTTTAGCAGGGAAAAATCAGGGGGCCTGTGGCAGTTTCTGGACTTTCTCCATCACGGAGGCCCTAGGGTCGGCTGTGGCTATTGCCAGtgggaaaatgctgtctttggcTGAACAGCAGCTGGTGGATTGTGCCCAGGACAATCATGGCAGCGAAGGAGGTCTCCCCAGCCAGACCTTCGAGTACATCCTGCAGCTACCCTTCCATAGGCAAGAATGGTCAGTGCAAatgcaagccgctgttgcaTTCATCCAGAATGTTGTCAACAGCACACTCAATGATGAGGTTGCAGTGGTAGAGGCTGTGGCTCTATACAACCCTGTGAGCTTTGCCTTTAAGGTGACTGAAGATTTTATGATATATAAAAGTGGCATCTACTCCAGTACATCCTGTCATAAAACTCCAGATAAAGTACACCATGCAGTCCTGGGTGCTGGCTATGGAGGACAGAATGGATTACTCTACTGGACTGTGAAAAAATTCTTGGGGCTCCCAGTGGGGGAATGATGGGTATTTCCTCATTGAGCGTGTAAAGAACATGTGTGGCCTGGTTGCCTGTGCCTCCTACCCCATCCCTCAGGTATAAGCCATGGTTGCAAGGCAACTGGTTGGAAGACAAAGGGAGGAActggtccagcaacaggcccaccCATGTGACACCATCACCAGCCATATGCTTTGAATGTGGGTTTTAAATGACCCAAACCCACGTTGACCTagaatcttctctctttccaGCTCTCTTCACGTAGTGAGAGCAATGGCTACCTTTTCTATGTTGTTTATTCAATAAAT |
>NM_007801.3 |
GAAGGCCAGGGAGCTATGGTTCAAGAAACCTTCACGGAGACGGAGTTACCAGAGATGGGGACAGACAGGAAACTGGGGATTAGGCTGCGCTTCCTCCCACTTGGCAGGGACTAGCCTTCAGGGTCAGACCCTGAGAACCCTTCTTCCCAAGAGCAGGAGTGTAATGGCCACAGGGGGCAGGAGAGGAACCATCATCACCTAGGCGGAGGCCAGAGTCGCCCCACCTCCTTTCCACAGGCTGGGCTCAGAGGGCACTCGGTGGGACCGGGCAGTGAGCGCCGAGATGTGGGCTGCGCTGCCGCTGCTGTGCGCTGGGGCCTGGCTGCTGAGTACTGGGGCCACCGCCGAGCTGACCGTGAACGCCATAGaaaaGTTTCACTTTAAGTCATGGATGAAACAGCATCAAAAGACGTACAGCTCGGTGGAGTACAACCACAGACTGCAGATGTTTGCCAACAACTGGAGGAAGATTCAAGCCCACAACCAGAGGAACCACACATTTAAAAtggcATTGAACCAGTTTTCAGATATGAGCTTTgctgaaataaaacacaaattccTTTGGTCAGAGCCTCAGAATTGCTCAGCCACCAAAAGTAACTACCTCCGAGGTACAGGCCCCTACCCTTCCTCCATGgactggaggaagaaaggaaatgttGTTTCGCCAGTGAAAAATCAGggGGCCTGTGGCAGCTGCTGGACTTTCTCTACCACGGGGGCCCTAGAGTCAGCTGTGGCTATTGCCAGtgggaaaatgctgtctttgGCTGAGCAGCAGCTGGTGGATTGTGCCCAAGCCTTCAACAATCATGGCTGCAAAGGAGGTCTCCCCAGCCAGGCCTTCGAGTACATCCTATACAACAAGGGCATCATGGAAGAAGACAGCTACCCTTACATAGGCAAGGATAGTTCATGCAGATTCAACCCCCAAAAAGCTGTTGCATTCGTCAAGAATGTTGTCAACATCACACTCAATGACGAGGCTGCAATGGTTGAGGCTGTGGCTCTATACAACCCTGTGAGCTTCGCCTTTGAGGTGACTGAAGATTTTTTGATGTATAAAAGTGGCGTCTACTCCAGtaaATCCTGTCATAAAACTCCAGATAAAGTAAACCATGCAGTCCTGGCGGTTGGCTATGGAGAACAGAATGGATTACTCTACTGGATTGTGAAAAACTCTTGGGGCTCCCAGTGGGGGGAGAATGGGTACTTCCTCATTGAACGTGGGAAGAACATGTGTGGCCTGGCTGCTTGTGCCTCCTATCCCATTCCTCAGGTATAAGCCACGGCTGCACGGGCAACTGATTGGCAGACCAAGGGAGGAACTGGTCCTTCGATGAGAATGCCACCCTGGAGAAAATTGTGTGGAAATCCACCCAGAGGCCCTCTCACTCCTGAGTCTAGACGCCTAAAGACAGGAAGGACAAACTTGAATAGCGACAAGCCCACCCACGTGACATCATCACCAGAAATACGCTTGGATTGTGGTTTTTTAATGACCCAAACCCACGTGGACCTAGAATCGTCTCTCTTTCCAGCTCTCTTCATGTACTGGGAGCTGTAATGGTTACCTTTTCTATGTTGTGTATTCAATAAACACACAGTAAATACCTCCCTGGG |
PMID - Link | Title |
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No publications available for this retrocopy |