Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name Lrp8P1
Plot displaying the genomic locations of a retrocopy (in chrY) and its respective parental gene (in chr4). Each line represents a retrocopy.
Species Mus musculus
Coordinates chrY:1291006-1291953  UCSC
Strand +
Parental Sequence NM_001369054.1
Parental seq. overlap 823 bp
Parental seq. overlap (%) 12.4%
Genomic Region Intragenic (Gnaq)
Retrocopy Summary Lrp8P1, located on chrY:1291006-1291953, is a retrocopy of the parental gene Lrp8. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name Lrp8
Full Name low density lipoprotein receptor-related protein 8, apolipoprotein e receptor
Also known as 4932703M08Rik|ApoER2|Lr8b
Coordinate chr4:107659337-107734037
Strand +
Gene summary Enables several functions, including amyloid-beta binding activity; apolipoprotein binding activity; and reelin receptor activity. Involved in several processes, including nervous system development; positive regulation of CREB transcription factor activity; and regulation of dendrite development. Acts upstream of or within central nervous system development and positive regulation of protein kinase activity. Located in cell surface and extracellular space. Is expressed in nervous system and retina layer. Human ortholog(s) of this gene implicated in Alzheimer's disease; coronary artery disease; dementia; myocardial infarction; and schizophrenia. Orthologous to human LRP8 (LDL receptor related protein 8). [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>Lrp8P1
AAGCATTGACTTCAATGGAGGCAACAAAAAGATGCTCATTTTCTCCACTGACTTCCTGAGTCACCTTTTTGGTGTAGCTGTATTTGAGGACAAGGTATTCTGGACAGGTCTGGAGAATGAGGCCATTTTCAGTGCAAATTGGCTCAATGGCTTGGAGATCTCCATCCTGGCTGAGAGCCTCAATAACGCACATGACATTGTAATCTTCCATAAGCTGAAGCAGCCAAAGGCTGCAGATGCCTGTGAACTGAATGCTCAGCCCAAAGGCGACTGTGAATACCTGTAACTTCCTGCTCCTCAGATTTCCAGTCACTCTCCCAAGTACACATTTGCCTGTCCTGACACAATGTGGCAGGGACCAGACATGAAGAGATGCTACTGAGCACAACTACAACCTTAGCATCTGCCATGACAAGGACAGTACCTGCTACCACAAGAGCCCCTGGGACaaccatccacaatcctacctaCCAGATCCACAGTACAGAGACACCAAGCCAAACAGCTGCTGTCCCACACTCGGTTAACGTCCCTAGGACTTCCCCTATCAGCCCATCTACCCTGAGCCCTGCAACCAGCAACCACTCTCAGCACTATGGGAATGAGTCAGCCAGATGGGTTCAACTATCATTGGGGGCATTGTGTCCATAGTGGTAATAGCCATGCTGTGTATGAGCAGGTACCTTATCTGGAGAAACTGGAAGCAGAACAACATGAATTTTTACAACCCAGTGTACAGGAAAacaatctTAACATAGAGAGGACAGCTCAGATTGGCCATGCCTACCTCTCAACTGGCATTAAGTCTTGAAGATGATGGACTGCCCTGAGGATGGGCCCACCTATTTTGTGCCTCATGGAGTTTAGTCCTATGCACTACTCTTTCTGGATGGTGTATGATTGGATGAAtgcca
>NM_001369054.1
TGACTATGTATCACTCCTGCGGCGTGGAGTACAGGGACTCACAGAGCCAAGAGGACCTGCGCGGACAGCGACTTCACCTGTGACAATGGCCACTGCATCCCAGAGCGGTGGAAGTGCGACGGCGAGGAGGAGTGTCCCGATGGCTCTGACGAATCGAAGGCCACGTGCTCCAGTGAAGAGTGTCCTGCCGAGAAGTTAAGCTGCGGACCCACCAGCCACAAGTGTGTGCCTGCCTCATGGCGCTGCGACGGAGAGAAGGACTGTGAGGGTGGTGCTGACGAGGCCGGCTGTCCCACCTCACCAGGACCCTGCCGCGAGAATGAGTTCCAGTGTGGGGATGGGACTTGCGTTCTTGCCATCAAACGGTGCAACCAGGAGCGGGACTGCCCGGACGGGAGTGACGAAGCGGGCTGCCTTCAGGGGCTAAATGAGTGTCTGCACAATAACGGCGGCTGTTCCCACATCTGCACTGACCTCAAGATCGGCTTTGAGTGCACGTGCCCAGCAGGCTTCCAGCTCTTGGACCAGAAGACCTGTGGTGACATTGATGAATGCCAGGACCCGGATGCCTGCAGCCAAATCTGCGTGAATTACAAGGGCTACTTTAAGTGTGAATGCCACCCTGGCTATGAGATGGATACACTGACCAAGAACTGCAAAGCTGTAGCCGGCAAGAGCCCATCTCTGATCTTCACGAACCGACACGAGGTGCGGAGGATAGACCTGGTGAAGCGGGACTACTCGCGCCTCATCCCCATGCTCAAGAATGTCGTGGCGCTGGACGTGGAAGTAGCCACCAATCGCATATACTGGTGCGACCTCTCCTACCGCAAGATCTACAGCGCCCACATGGACAAGGCCAGCATCCCGGACGAGCAGGTGGTCCTCATTGATGAGCAGCTGCACTCCCCGGAGGGCCTGGCGGTGGACTGGGTCCATAAGCACATCTACTGGACAGACTCAGGCAATAAGACCATCTCAGTGGCCACAACCGATGGACGCCGCCGCTGTACTCTCTTCAGCCGTGAGCTCAGTGAGCCCCGAGCCATTGCCGTTGACCCCCTGCGAGGGTTCATGTACTGGTCTGACTGGGGTTTCCAGGCAAAGATTGAGAAGGCTGGGCTCAATGGTGCAGACCGGCAAACACTGGTTTCAGACAACATTGAATGGCCCAATGGAATCACCCTGGactTGCTGAGCCAGCGTTTGTACTGGGTGGACTCCAAGCTGCACCAACTATCCAGCATTGACTTCAATGGAGGCAACAGAAAGATGCTGATCTTCTCCACTGACTTCCTGAGTCACCCTTTTGGGGTTGCTGTATTTGAGGACAAGGTATTCTGGACAGACCTGGAGAATGAGGCCATTTTCAGCGCAAATCGGCTCAATGGCCTGGAAATCGCCATCCTGGCCGAGAACCTCAATAACCCACATGACATTGTAATCTTCCACGAGCTGAAGCAGCCAAAGGCTGCAGATGCCTGTGACCTGAGTGCCCAGCCCAACGGCGGCTGTGAATACCTGTGCCTTCCTGCTCCTCAAATCTCCAGCCACTCCCCCAAGTACACGTGTGCCTGTCCTGACACGATGTGGCTGGGCCCAGACATGAAGAGATGCTACCGAGCACCTCAGTCTACCTCAACTACAACCTTAGCCTCTGCCATGACAAGGACAGTACCTGCTACCACAAGAGCTCCTGGGACAACCATCCACGACCCTACCTACCAGAACCATAGCACAGAGACGCCAAGCCAGACAGCTGCCGCCCCTCACTCGGTTAACGTCCCTagggctcccagcaccagcccaTCCACCCCGAGCCCTGCTACCAGCAACCACTCCCAGCATTATGGGAATGAAGGCAGCCAGATGGGCTCAACAGTCACCGCTGCTGTCATTGGGGTCATCGTGCCCATAGTGGTAATAGCCCTGCTATGTATGAGTGGGTACCTCATCTGGAGGAACTGGAAGCGGAAGAACACCAAGAGCATGAATTTCGACAACCCAGTGTACAGGAAAAcgacagaagaggaagaggaagatgagctTCACATAGGGAGGACAGCTCAGATTGGCCACGTCTACCCCGCACGAGTGGCATTAAGTCTTGAAGATGATGGACTGCCCTGAGGATGGGCCCACCCACTTCGTGCCTCATGGAGTTCAGTCCTATGCACTACTCTCTCTGGATGGTGTGTGATTGGATGAGTGCCATTTCTATATAtgggtctgtgtgagtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgactttttttaaatttatgttgcgGAAAGGTAACCACAAAGTTATGATGAACTGCAAACATCCAAAGGATGTGAAAGTTTTTATATGTATAATGTTTTATACACTTTTTAACTGGTTGCACTACCCGTGAAGAATTCATGGGACAGCCACTGCTGAGTGACTAACATGATGCACATAACCAAACGGGGCCAATGGTACAAACTTCACTCATCATTTGAATACAGTATTTACAGAGGATGTTTGAGTTGAGAGCTTTTTTAGGTTTGAGGGGCTtgatttttttgtaaataaaattatgCTTTGTGGCTATCCATCAACAtaagtataaaaagaaagaacGCTTCAACCCCCTTCCCCATTTAGATTATTTATTAACATATTTCGAAAGTAAGGTTAGCTCTATAAATAATTTAGAGAGGTGAGAGTATTTATTTTTGGTATGGCTGGCTCACTGCACAgactctgtgtttatgtgtgtgtgtctgtgtgagagaagAAAAATCTGTAGAGAAGAGGCACGCTTATGACTATtgttcaaatacataaaaacagTTATTTTAAAACAGTCCACAAGAGGGGTGTCTAGTTTTCAGAGACACTTCAGAAACTTTGCTCAGAAAACAGATGCTACAGTTTGTGCAGGCATGCGGTAGGAAAGGTAGATCACCTCTGGCTACTCCTGAGGCCCTGCTGAGCCAGCAAAATGCTTTCCAGTTCCTCTTTGGCTCTCACGATGCCCACCTAGGCTTTCTGGCCAGTGTACTGAACAGTGCTACAAGCCCTCAGGAGCTCAAGATAGCAGAGTCCTTCTTTCAAAGCCCAGCTTAGTGAGGACTTGGGTCAACTTCAGTAAGCTTCCTCTGAAGCAACTGAAGGCCGAGCCTTTAGAGCAACCATTGTCAACCTTTGTGGGTCGCCTAAGAGCATCGCaaaccagatatttacattatgattcataacagtgacaatcacagttatgaggtagaaaggaaagggattttatggttgggggttagtCCAACAAGAGGGACAGTGTTAATGCTTCtgaagcatcaggaaggttgaaagCCACTGCTCTAGAGCCAAGTGAGTGCATGTCTAGGGTTCCCATGTTTACAGTAAGGACCGGCTCAGGCACTGACCCTCTGAGTCACGTGAATGAGGACGAAGAATTTGGAATAGGTTTGGTTACATCTATTTCTCATCCCCTTATTTTccaccatttaaaaataataaacatgtttCTTACCACCGTATGTTCATATGGATAAGACTAAGTCCAAAAAGGTGACTACATCCAAATTTATATTTCGGGGAAATACCATGAGATAATTATAGCATACTGGGCATGTGTCCACACACGGATTGGTTTCACTGCTTTATAAATAAAAGGAACAACTCTGGGTATTTGTATAGAATTTTCTTCATATGTAACATCTTTCCATTTCCTgagccttgggggtggggtgggagaatgCCACTTGCTGTCTGTGAAGTCCACTGTTGGAAACATAATTCCATAGTCCCAGAAGGAATTCAGTCCCCACCAACTTACTCTTTCAAAGTGTGGTCTTCCCGCGACTCTGCAGCTCTGCAGTTCACTCCAGCTGAACGACCAGGGACAAGTACAACACAGGAGTTTGGCTTAAGTGGCAGCAGACTAATATCTAAAGTTGACATAACTGAAATCTGACATTTGAGGCATATGTCTCCGCGTCCCCACACACCGGCTTGAGTGGCTCACCTGCTTGATGTCCTTTCAACTTCCGGGGAGACCGTCTGGAGACCTGTCATCCTGTCATCCTGTTCCTAGGAGCTTGCTCTATGTCACTCATGTTTTCCTAACCTTTAAAAAATGGCTGTGTTCCAAGCCTGGCCATTATGTCTGACAATGCACGTGTTGATGGTCTTGAGATATACAGTGACTAAATGCAGCTGACCCCTGACCCATTCCAAACAGTCTCAAGGACAGGCAGCTGAGTCCCCTGCAGCTCGCCTGTCACTGTTCATCCAGGAATGGAGAGGAGAAATCAAGTTTACTAAAGAAAAAGGTTAGAAGTGAAATCATCAAAATTTACACAAGATAGGCAGGGTTTTTCCCTTTAATCTGCCTCCAAGGAAACTGAAGCAGTGATAGTGTATAGTTTCTGAACAAACGTTCATAGCCTAGCCTTCACAACAAGGCTGAAACATACCGTCTAGGGTTTCCGAAAGATGAAAGAATTCATATCAGAAATACCATGTTTCCTGAATGTGCCACAGCTGCAGTCTAAAAGCAGCCTACAGTAAACAGATGGGCAAATCCAGGGACGGCCGGAGAGCGGAAGCACTCTGAGGGACCAGACCGACCTCCTTCTATCCTTGGAAACTTTTTGAGCCTCATTCTGAGGTGTAATTCAGACTTCTGTTGCCTTTCGCCTCTGCCTATGTATCCACAGCCAATAACAGCTGAAAGGAAACTCAGTAATAAACCAAAAGGACAGAAAATTCAACAAACGTTACTTATTAAAACGAAGCCAACCCCTTCCTTCTCTAGAAGACAACTCTGAGCAGCCTGAACAAGGTCTCAGACCTGCATCCTCTCCACAGCTATCTGCCCAGTGGATTGAAGGCACTAACAGAAACGACTTTCCTGAAACAAGAAACTACAGCTTTGTTTACTCTtcagaatgtgtgtatgtgtgtgcacagagggACAGGATGAGACGGCTTCTGACAAGGAGTAAGAAGAATGAGACAGGATTTAAACTGATGTCAGTGAACACTGTTGAAGCCCTCCAGTTATCCTCATGTCTTAGTAACATACTCAGAGTATTCACTCGCTGCTGTGTGCCAGGCTTTGCAGACATTGCAGGTCAATTCAACAGTTTTCACCCTTTCCAAACTCACAGCAGTACATAtggatacaaaaagaaaaaaaaattttcccaTAGATTTCACCTAGACTACTCCCAAGGCACAACAAAAGAGATGGGCCATTTTACCTGAAGAGGTGGAAATAGGTCTACATAGGAATGACCCAAAGCAATGTCTTAAAACTTAAAAAGTGGTGTTCAGGCTGCTTCTATGAGAAGAGGCTGGGCTCAGACTGGGAGTGAATCAGCAGCAGGAATTTCAAGGAAAACATGGAGTTCCTTACACCTGGAATAAAGAACTTTAGCAGGGTTGGCAAGATGTGAAACTGGATGGAAAGACAAGTTCAACACAAGCACTTTATAAAATAGTCTGATGTAAGTAAGCAGACATTTGTTTGGTCGTCGGTTCCTGTGTGCAAGGCATCATGGGAAACTCCctgccagcacttggcaggcattATTCCACCTCAAGCTTTCCAGAGACCACAGGGAaatgactgttttctttatttgagcCAGAGGTTTTGATATGGTTCCTGAAGGCTAACAGAAGGGCGGTGGGCTTGTCAACAGAAGCACGCCATGTTGCCGAGCACCTGTGAGGTCCTCACGTGGGAGGAAGAGAACAAGGTGGTTAAGATAGAGAATCTGGAGAGGGTACCCCAATCACACTACAGTCGGGTGCTACTGGGTGGAGGAGAAAACCATCCTAACCCCACAGCACTGCAAAGACGCTCCTGTCCCGCCACACTCCCACCATCACGAACATCAGTAAGTCAGCAGTTTCAGATTCTGCCATTTCCTTCCCCATAAAAGCATGAAGATAGGGAGTCGGTGTCCTTACGCTTTATTTTTAGGGTATTTGGGAGTTTCCAGGATGTGAAGAAGTTAGGTGGAGGAAATTACGGCTTCAATTTTTTTCAGTTAACTACAGGACGCTTCATTCAGGCCGGGCACCATGTGCACAGTCTTAAGAAGCAGCAGGAACTGCATTTGCAAACACGTgttgtaaaaaattaattttaaaaaagctacctgtataaatataaatatatatatttaaagacaaggttttgatactttttttttaaaaaacaaaaactacaagaGAAGACTGTACAAACCACGGgcttttaaaatagcattttgcTCTCTACAAGCTGTTAATGtcaggggtgaggggtgagggacTGGTTTGCAAACACACTATCCAAATGGATTTGCTTGTTTTGTCAAGCCACCCTCCAAATTACCATATTTGGTGTAATAGTAGGGCATGTAAAGTTATTGGGTCCCATTAACCATTTCTGCTCTTGTCATGTCATTCCGGGTTCCGTTAGCTCCCGTACTCGGCAATCCAGCTTcttccagaggcagaggggctGAAGGAAGTGTGCTCCATTTCACTAGCTGTACTGACATCATCCACATGTGGACATTTGTAATATCAGTACACTATTTCTAGAGagattaaattcattttttaaaatc

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