Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RRAGBP1
Plot displaying the genomic locations of a retrocopy (in chr1) and its respective parental gene (in chrX). Each line represents a retrocopy.
Species Oryctolagus cuniculus
Coordinates chr1:34823572-34824507  UCSC
Strand -
Parental Sequence XM_002720034.3
Parental seq. overlap 793 bp
Parental seq. overlap (%) 37%
Genomic Region Intergenic
Retrocopy Summary RRAGBP1, located on chr1:34823572-34824507, is a retrocopy of the parental gene LOC100346402. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC100346402
Full Name N/A
Also known as RRAGB
Coordinate chrX:36864272-36900007
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RRAGA
Chimpanzee Pan troglodytes RRAGBP1
Bonobo Pan paniscus RRAGBP1
Gorilla Gorilla gorilla RRAGBP1
Orangutan Pongo abelii RRAGBP1
Gibbon Nomascus leucogenys RRAGBP2
Mouse lemur Microcebus murinus RRAGBP1
Chinese hamster Cricetulus griseus Rragb_1P1
Pig Sus scrofa RRAGBP1
Cow Bos taurus RRAGBP2
Dolphin Tursiops truncatus LOC109547242P2
Horse Equus caballus RRAGBP1
Panda Ailuropoda melanoleuca RRAGBP1
Cat Felis catus RRAGBP1
Pale spear-nosed bat Phyllostomus discolor RRAGBP1
Velvety free-tailed bat Molossus molossus RRAGBP1
Greater mouse-eared bat Myotis myotis RRAGBP1
Kuhl's pipistrelle Pipistrellus kuhlii RRAGBP2
Greater horseshoe bat Rhinolophus ferrumequinum RRAGBP1
Egyptian rousette Rousettus aegyptiacus RRAGBP1
Sloth Choloepus didactylus RRAGBP1
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Sheep Ovis aries Without Homology
Dog Canis familiaris Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RRAGBP1
CCAAATACAGCCATGAAGAAAAAGGTGCTGTTGATGGGGAAGAGCGGGTCGGGGAAGACCAGCATGAGGTCGATTATCTTTGCAAATTACATCGCTCGCGACACCCGGCGCCTGGGTGCCACCATTGATGTGGAGCACTCCCACGTCCGATTCCTGGGGAACCTGGTGCTGAACCTGTGGGACTGTGGCGGTCAGGACACCTTCATGGAGAATTACTTCACCAGCCAGCGAGACAACATCTTCCGGAACGTCGAGGTTTTGATTTACGTGTTTGACGTGGAGAGCCGCGAACTGGAAAAGGACATGCATTACTACCAGTCCTGTCTGGAGGCCATCCTCCAGAACTCTCCCGATGCCAAAATCTTCTGCCTGGTGCACAAAATGGATCTGGTTCAGGAGGATCAGCGTGACCTGATTTTTAAAGAGCGAGAGGAAGACCTGAGGCGTCTGTCTCGCCCCCTGGAGTGCGCCTGTTTCCGAACATCCATCTGGGATGAAACCCTCTACAAAGCCTGGTCCAGTATTGTCTATCAGCTCATCCCCAATGTTCAGCAGCTGGAGATGAACCTAAGGAATTTTGCCCAAATTATTGAGGCCGATGAAGTTCTGCTGTTCGAGAGGGCTACGTTCTTGGTTATTTCACACTACCAGTGCAAAGAGCAGCGTGACGTCCACCGGTTTGAGAAGATCAGCAACATCATTAAGCAGTTCAAGCTGAGCTGCAGTAAATTGGCCGCTTCTTTCCAGAGCATGGAAGTTAGGAATTCCAACTTCGCTGCTTTCATCGACATCTTCACATCAAACACGTATGTGATGGTGGTTATGTCAGATCCGTCCATACCTTCTGCAGCTACTCTCATCAACATTCGCAATGCCAGGAAACACTTTGAGAAGCTGGAAAGAGTGGATGGCCCCAAGCACAGCCTCCTCATGCGT
>XM_002720034.3
CTGGGTTTACGGCAGGTGCCCACGTGATGCTGGCCTGCAGTCTGGTGGCTGCGGTGAGGTACCTGGGCTCCTGAAGGGCGGGCGGTTAGATAATAACCGCCGCCATCGGGCGGATTCCCTAGGGCGGCCAGGCCACTGGTGCAAGGAGCCGGCCGACAGCTTAGTGCCTACTGCACGGGTCAGCTCTTTCTGCTGCCTCCGCCTTCGCGATCCCTACTTCTTTGCGGTGAAGTGACCTTTGGGTTTTGAGAGCTTGGGTCCTGAGGCCCAAACTTGGGACGAATCCCTAACCCACCACTCCTTTTCCCCCTAATCCTCTTTCTCTTCCTTTGCACCACTGAATCATTTGACCTTTGAGCTGGTCGGCTCGGCAGTGCCTTGAGGCCAATTTCGGGCGGTAAAGGTAACCTTGGGGAAAGCGGCCCCCCAGTGGACAAAGGCGGAGGCAAGCATAGAGCAGGCCTAAGGGCCTCAGGCAATGAGAATAGGCAGTTAAGAGGGTGAACAAGAAAAAAGAATATTGCGGATTTAGAAGGGACCGGAAAGAACTTGTTGCAAGATGGAAGAATCTGATTCTGAGAAAAAGATGGAGAAAGAAAATTTGGGGCCGAGAATGGATCCTCCACTAGGGGAACAAGAAGGATCGCTAGGGTGGGTGCTACCAAACACAGCCATGAAGAAAAAGGTGCTGTTGATGGGTAAAAGTGGGTCTGGTAAGACCAGCATGAGGTCTATTATCTTTGCAAATTATATTGCCAGAGACACACGTCGCCTTGGTGCAACAATTGATGTAGAACATTCTCATGTTCGATTTCTGGGAAACCTGGTTTTGAACCTGTGGGATTGTGGTGGACAAGACACCTTCATGGAAAATTATTTTACTAGCCAAAGGGACAACATCTTCCGAAATGTGGAGGTTCTGATTTATGTCTTTGATGTGGAGAGCCGTGAACTGGAAAAGGACATGCACTATTACCAATCATGCCTGGAAGCTATTCTGCAGAACTCTCCAGATGCCAAAATCTTTTGCTTGGTACACAAAATGGATCTGGTACAAGAGGATCAACGGGACCTGATTTTTAAAGAGCGAGAAGAAGATCTAAGGCGTTTGTCTCGCCCATTGGAATGCTCTTGCTTCCGAACATCTATCTGGGATGAAACTCTCTATAAGGCTTGGTCGAGCATTGTTTATCAACTGATTCCCAATGTTCAGCAGCTGGAAATGAATCTAAGGAATTTTGCTGAAATTATCGAAGCAGATGAAGTACTTCTGTTTGAGAGAGCTACTTTTCTGGTGATTTCTCATTATCAGTGTAAAGAGCAGCGTGATGCCCATAGATTTGAAAAAATCAGCAATATTATTAAGCAATTCAAGCTGAGCTGCAGCAAGCTGGCTGCCTCTTTCCAGAGTATGGAAGTTAGAAATTCTAATTTTGCTGCTTTCATTGATATCTTTACATCCAACACTTATGTGATGGTTGTGATGTCAGATCCATCCATTCCTTCTGCAGCTACTCTGATCAACATCCGAAATGCCAGGAAACACTTTGAAAAGCTGGAAAGAGTCGATGGACCAAAGCAGTGCCTTCTCATGCGCTAAACATTGCCGAATATTGTTTTACATTTAAAAAGTGAAGCACTGTTTCTTAATTAATCTTAATGTTCTATTCATATATGTAGGCTCTGAAATGTTGTGATGCTAACTATTGCTGTATTTCTTTTCTATGCCTTAGTCTTAACATTTAACCTTTAATGCTATTTCCTCAAGTAGCCAGTGAAGAGGTAGAAGATGACCTTTCCATAAAGTCAGTGTAAAATAAAAGTAGGTGATATGTTAAGTGTTCTCTTAATAAGCTTCTAGTAGTGTTTAAGTGTTATGATAATCTGATTCCAATAGTAGTGTATGTCAAACCCTTTCCCAGTATCGTCCTGTATTCCCTACCAGATAGTAACCACTAAGCTTGGAGTATTACTGTTTTCTCAGCATGCATTAAAAATATTCCTTAACTTCAACTGTAAATAAACTTTTGCTGTTAGGCATTTCAGTGTTTGTTTTTCTTGTTTCTTCAACTTTGCAGTAAGAGTGGGCAATGGAATTTCATAGTTACCCTAGGCAAAGGGGACCTGTTGGCAAGGGAAATG

Publications

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