Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name NAA10P1
Plot displaying the genomic locations of a retrocopy (in chr15) and its respective parental gene (in chrUn0118). Each line represents a retrocopy.
Species Oryctolagus cuniculus
Coordinates chr15:71000851-71001300  UCSC
Strand +
Parental Sequence XM_008250281.2
Parental seq. overlap 387 bp
Parental seq. overlap (%) 39.9%
Genomic Region Intragenic (Smn1)
Retrocopy Summary NAA10P1, located on chr15:71000851-71001300, is a retrocopy of the parental gene NAA10. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name NAA10
Full Name N/A
Also known as ARD1A
Coordinate chrUn0118:512374-516267
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens NAA10P1
Chimpanzee Pan troglodytes NAA10P1
Bonobo Pan paniscus NAA10P1
Gorilla Gorilla gorilla NAA10P1
Orangutan Pongo abelii NAA10P1
Gibbon Nomascus leucogenys NAA10P1
Green monkey Chlorocebus sabaeus NAA10P1
Crab-eating macaque Macaca fascicularis NAA10P1
Rhesus Macaca mulatta NAA10P1
Baboon Papio anubis NAA10P1
Golden snub-nosed monkey Rhinopithecus roxellana NAA10P1
Marmoset Callithrix jacchus NAA10P2
Pig Sus scrofa NAA10P1
Cow Bos taurus NAA10P1
Sheep Ovis aries NAA10P1
Dolphin Tursiops truncatus NAA10P1
Horse Equus caballus NAA10P1
Dog Canis familiaris NAA10P1
Panda Ailuropoda melanoleuca NAA10P1
Cat Felis catus NAA10P1
Velvety free-tailed bat Molossus molossus NAA10P1
Greater mouse-eared bat Myotis myotis NAA10P1
Kuhl's pipistrelle Pipistrellus kuhlii NAA10P1
Greater horseshoe bat Rhinolophus ferrumequinum NAA10P1
Egyptian rousette Rousettus aegyptiacus NAA10P1
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>NAA10P1
CATGAATATCCGCAACGCCCGGCCGGACGACCTGATGAACATGCAGCACTGCAACCTGCTCTGCCTGCCTGAGAACTACCAGATGAAATACTATTTCTACCATGGCCTTTCCTGGCCGCAGCTCTCCTACATCGCCGAGGACGAGGACGGGAAGATTGTGGGCTACGTCCTGGCCAAAATGGAGGAGGATCCAGACGATGTCCCGCATGGACACATCACCTCTCTGGCCGTGAAGCGCTCGCACCGGCGCCTCGGCCTGGCCCAGAAGTTAATGGACCAGGCCTCCCGGGCCATGATAGAGAGCTTTAGCGCCAAGTACGTGTCCCTGCACGTCCGGAAGAGTAACCGCGCGGCCTTGCACCTCTACTCTGACACCCTCAACTTTCAGGTTAGTGAGGTGGAACCCAAATACTATGCCGATGGGGAAGATGCCTACGCTATGAAGCGGGA
>XM_008250281.2
GCGGCTGCGCACTTCCGGCCGGTGGCAGGGCCGCTTCACATCGCCTTTTCCGCCGCCACCCCCGCGATCCCGGCTCCACTCCCAGTCGCAGCGCCGATCGCAGGTCGGTTCCGGCAGGCCAAGCGTCGCTTCGGAGCGCAGTGGCAGCTGACTGCGCGTTCTCGATCCCCTGGGACTCGACAGCTTCTCCGCCGTTATGAACATCCGCAATGCGAGGCCCGAGGACCTGATGAACATGCAGCACTGTAACCTCCTCTGCCTGCCCGAGAACTACCAGATGAAATACTACTTCTACCATGGCCTCTCTTGGCCCCAGCTCTCCTACATCGCTGAGGATGAGAATGGGAAGATTGTGGGATACGTCTTGGCCAAAATGGAAGAGGACCCAGATGATGTGCCACACGGACATATCACCTCACTGGCGGTGAAACGTTCCCACCGGCGCCTCGGCCTGGCTCAGAAGCTGATGGACCAGGCCTCTCGGGCCATGATCGAGAACTTCAACGCCAAATACGTCTCTCTGCATGTCAGGAAGAGTAACCGGGCCGCCCTGCACCTCTATTCCAACACCCTCAACTTTCAGATCAGTGAAGTAGAGCCCAAGTACTACGCAGACGGGGAAGACGCGTACGCGATGAAGCGGGACCTGACTCACATGGCCGAGGAGCTGAGGCGGCACCTGGAGCTGAAGGACAAGGGCCGGCACGTGGTGCTGGGCGCCATCGAGAACAAGGTGGAGAACAAAGGCGGTTCGCTTCCGAGCTCGGGAGAGGCCTGTCGCGAGGAGAAGGGCCTGGCGGCTGAAGACAGCGGTGGGGACAGCAAGGACCTCAGCGAGGTCAGTGAGACCACCGAGAGCACCGACGTCAAGGACAGCTCGGAGGCCTCTGACTCGGCTTCCTAGAGCCTGCCCTGGCCCGCCGTCCTGCCCGGAGCTCTCCAAATAAACTTCACCCCGTGGTCCTGGGGAA

Publications

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