Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name PRPS1P1
Plot displaying the genomic locations of a retrocopy (in chr9) and its respective parental gene (in chrX). Each line represents a retrocopy.
Species Sus scrofa
Coordinates chr9:87163247-87164234  UCSC
Strand -
Parental Sequence XM_003135301.4
Parental seq. overlap 821 bp
Parental seq. overlap (%) 37.9%
Genomic Region Intergenic
Retrocopy Summary PRPS1P1, located on chr9:87163247-87164234, is a retrocopy of the parental gene PRPS1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name PRPS1
Full Name N/A
Also known as -
Coordinate chrX:88074861-88101925
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens PRPS1L1
Chimpanzee Pan troglodytes PRPS1P1
Bonobo Pan paniscus PRPS1P1
Gorilla Gorilla gorilla PRPS1P1
Orangutan Pongo abelii PRPS1P1
Gibbon Nomascus leucogenys PRPS1P2
Green monkey Chlorocebus sabaeus PRPS1P2
Crab-eating macaque Macaca fascicularis PRPS1P1
Rhesus Macaca mulatta PRPS1P1
Baboon Papio anubis PRPS1P1
Golden snub-nosed monkey Rhinopithecus roxellana PRPS1P1
Marmoset Callithrix jacchus PRPS1P2
Mouse lemur Microcebus murinus PRPS1P3
Cow Bos taurus PRPS1P1
Sheep Ovis aries PRPS1P1
Dolphin Tursiops truncatus PRPS2P1
Horse Equus caballus PRPS1P1
Dog Canis familiaris PRPS1P1
Panda Ailuropoda melanoleuca PRPS1P1
Cat Felis catus PRPS1P1
Velvety free-tailed bat Molossus molossus PRPS1P2
Greater horseshoe bat Rhinolophus ferrumequinum PRPS1P3
Egyptian rousette Rousettus aegyptiacus PRPS1P2
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>PRPS1P1
AAGAGAGTCTAAGGCAGTTGACCAAAATGCCAAATATCAAAATCTTCAGCGGCAGCTCCCACCAGGATTTATCCCAGAAAATTGCTGGCCGTCTGGGTTTGAAGCTAGGCAAGGTGGTGACGAAGAAATTCAGCAACCAGGAGACCTGTGTGGAAATTGGTGAGAGTGTGCGAGGAGAAGATGTCTACATAATGCAGAGTGGTTGTGGTGAAATCAACGACAATCTGATGGAGCTTTTGATCATGATTAATGCCTGCAAGACTGCTTCAGCCAGTCGGGTAACTGCAGTCATCCCCTGCTTCCCGTATGCCCGGCAGGATAAGAAGGATAAGAACCAGGCGCCAATCTCTGCCAAGCTTGTTGCAAATATGCTGTCTGTAGCAGGAGCAGATCACATCATCACCATGGATTTACATGCTTCTCAAATTCAGGGCTTTTTTGATATCCCAGTAGACAATTTGTATGCAGAGCCAGCTGTCCTGAAGTGGATAAAGGAGAATATCTCTGAGTGGAGGAATTGCACAATTGTCTCCCCAGATGCTGATGGAGCTAAGAGAGTGACTTCCATTGCAGACAGATTGAATGTGGACTTTGCCTTGATTCACAAAGAAAAAAAGAAGGCCAATGAAGTAAACCGAATGGTGCTAGTGGGAGATGTGAAAGATCGTGTGGCTATCCTTGTGGATGACATAGCTGACACTTGTGGCACAATCTGCCATGCAGCTGACAAACTTCTCTCAGCTGGAGCCATCAGAGTTTATGCAATCTTGTCTCATGGAATCTTTTCTGGTCCATGAAGCGTTGCTCCAAAATACAGGTTATCGACATCTCCATGATCCTTGCAGAAGCCATCAGAAGAACTCACAATGGGGAATCTGTCTCCTACCTGTTCAGCCATGTCCCATTATGATAGAG
>XM_003135301.4
AGGCGGAACTACGGCAAGGATCCGCCCCCTCGCTCGCGCTCAGCTAATCGGGGTGGGCGGGGTGTAAACTTCCCTGCTGACCCCGCCTCCCCGGCTCCGGGCAATTTAGAGTCGCGCGCCGGGCGGGAATGTAAGATGGCGGAGTAGCGACGCGAAGTGCTTAGTACTGAGTCTCCGGGCCGACTCAATTCGGATCTAGGCGGCAGCAGCAGGGATCGCTCAACAAAGAGAGCCTAGGGTAGTTGGCCAAGATGCCGAATATCAAAATCTTCAGCGGCAGCTCCCACCAGGACCTATCCCAGAAAATTGCCGACCGCCTCGGCCTGGAACTGGGCAAGGTGGTGACTAAGAAATTCAGCAACCAGGAGACTTGTGTGGAAATCGGCGAAAGTGTGCGTGGAGAGGATGTCTACATTGTTCAGAGTGGCTGTGGCGAAATCAATGACAATCTCATGGAACTTTTGATCATGATTAATGCCTGCAAGATTGCTTCAGCCAGTCGGGTTACTGCAGTCATCCCGTGCTTCCCTTATGCCCGGCAAGATAAGAAGGATAAGAGCCGGGCTCCAATCTCAGCCAAACTTGTTGCAAATATGCTCTCAGTAGCAGGCGCAGATCACATTATCACGATGGACCTGCATGCTTCTCAAATTCAGGGCTTTTTTGATATCCCAGTGGACAATTTGTATGCAGAGCCAGCTGTCCTCAAGTGGATAAGAGAGAACATCTCTGAGTGGAGGAACTGCACCATTGTCTCACCCGATGCTGGAGGAGCTAAGAGAGTGACTTCCATCGCAGACCGGCTGAATGTGGACTTCGCCTTGATTCACAAAGAACGGAAGAAGGCCAATGAAGTTGACCGCATGGTGCTGGTGGGGGATGTGAAGGACCGGGTGGCCATCCTTGTGGATGACATGGCTGACACTTGTGGGACAATCTGCCATGCAGCTGACAAACTCCTCTCAGCTGGAGCCACCAGAGTTTACGCAATCCTGACTCACGGAATCTTTTCGGGCCCAGCCATTTCTCGCATTAACAATGCGTGTTTTGAAGCCGTAGTCGTCACCAATACCATACCTCAGGAGGATAAGATGAAGCATTGCTCCAAAATACAGGTGATCGACATCTCCATGATCCTTGCAGAAGCCATCAGGAGAACTCACAATGGGGAATCTGTCTCCTACCTGTTCAGCCATGTCCCTTTATAATAGAATAACTTCTGAGGCATGGAAAAAATAAAGTGAGCCCCGCCCGTTATCTTCCCTTGGTATTTGATGAAAACCCCAGCAGAAGACCCAGCTTGTTGCAGTGTAGCTTTCTACATCCCATGTTGGGTATAGGAGCGTTTCTCCTAAATTACAGAATGTTTGAGATTAACTGCTGGGATCTCCTACCTGTATTGTCTTGTCCCAGCTTCTCTGCTCTTGTGAGCCTCCTAGCTTTAACTGCAGACAGCTCAGCTGCAGACACAAGTGCAGACTTTGGAAAGCGTTGTGTAGGGTGTCTGAATGTCTCTGGGGAAGCTCAGACTACTTTGCATGTGAAGGCTTCAGTccccaccccacccccacccccgccagacccctccacacACAACGTGTGACAAGTTCTCTAAAGTCTCTACTAAATTACAGCAAGAGCCAGGCAGCCCCAACCCAGCTCTGGTCCCCTGAGGCCCTGTAGGTAAGGCTGGAGCAGCTCTAGGGCGGGAGCCTGAAGGAAGGCCACCCACCGTGCAGCAAATGCTTCTTGGGAGGAAAAAGCCTGATGCTTCACCCTGTGCTTGGATTCTGTCGCTTGGATCCTGCTTTGTCCCCATTCCTTTCCATTCGGCCTGACCTTCTTTTCCTGACCAAATGTCCTCTTGGTCCCAAATGATCGTTGTGCCATAGTCTTCTGGAAGGCTTTCCTGCTCTAGAACCTGTAGCATTTCCATGAGATTATTTCGCTGTAGCTTAATCTTCCTTTGCCCACGGCCACCGTGGTAGTGGGGGTTAGGTGGTGGTGTAGTGCCTTTTGATTAATTTAACTATTTAACGATCATCTTCCTTCTCTTGGATCTGTTTGGCCTCTCTAATGACCTGAGATTTCTGTTAAAAGGTTGATGTTACTGTCTCCTGTAGAAGAAACTAATAAAGTGTCCGTGTGAACGCGGGTCTGTATCTGTA

Publications

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