Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name YY1P1
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr21). Each line represents a retrocopy.
Species Bos taurus
Coordinates chrX:121447608-121448220  UCSC
Strand -
Parental Sequence NM_001098081.1
Parental seq. overlap 507 bp
Parental seq. overlap (%) 24.9%
Genomic Region Intragenic (MBTPS2)
Retrocopy Summary YY1P1, located on chrX:121447608-121448220, is a retrocopy of the parental gene YY1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name YY1
Full Name YY1 transcription factor
Also known as -
Coordinate chr21:65168050-65197325
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens YY1P4
Chimpanzee Pan troglodytes YY1P4
Bonobo Pan paniscus YY1P4
Gorilla Gorilla gorilla YY1P4
Orangutan Pongo abelii YY1P4
Gibbon Nomascus leucogenys YY1P4
Green monkey Chlorocebus sabaeus YY1P4
Crab-eating macaque Macaca fascicularis YY1P4
Rhesus Macaca mulatta YY1P4
Baboon Papio anubis YY1P4
Golden snub-nosed monkey Rhinopithecus roxellana YY1P1
Marmoset Callithrix jacchus YY1P3
Mouse lemur Microcebus murinus YY1P3
Rabbit Oryctolagus cuniculus YY1P3
Pig Sus scrofa YY1P1
Sheep Ovis aries YY1P1
Dolphin Tursiops truncatus YY1P1
Horse Equus caballus YY1P2
Dog Canis familiaris YY1P1
Panda Ailuropoda melanoleuca YY1P2
Cat Felis catus YY1P2
Pale spear-nosed bat Phyllostomus discolor YY1P1
Velvety free-tailed bat Molossus molossus YY1P1
Greater mouse-eared bat Myotis myotis YY1P1
Greater horseshoe bat Rhinolophus ferrumequinum YY1P1
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>YY1P1
GAGAACTCAGTTCCTGATTATTCAGAGTACTTGACGGGTAAAAAACTGCCTCCTGAGGGAATTCCTGGTATTGATCTCTCAGATCCCAAACAACTGGCCGAATTTGCTAAAATGAAACCTAAAAATACTAAAGATGATGTGCCGAGAACAGTAGCTTGCCCTCACACAGGCTGCTTGAAGATGTTCAGGGATAGAGCTGCTTTGAAAAAACATATGCACACCCATGGTCCCAGAGTTCATGTCTGTGCAGAATGTGGCAAAGCTTTTGTTGAAGGCTCAAAATTGAAACGTCATCAACTGGTGCATACCGGAGAGAAGCCATTTCAGTGCACCTTTGAAGGCTGCGGAAAACGCTTTTCCCTAGATTTCAACCTGCGCACCCACGTGCGAATCCATACCGGAGATAGGCCCTACGTGTGCCCTTTCAGTTGCTGTAATAGAAGGTTTTCTCAGTCAACTAACCTGAAATCTCATATCTTAACACATACTAAGAATAAAAATAGGAAGTAAAAAGAAGGGAAGACTCTTCTCAGGCTCGGAAAGTGTCTTCCAGTTGTGTAATTGAAAATGAATATGCCTCTCTTTCGTAGACTGTTTCTAGAAAAGAATTTTG
>NM_001098081.1
cTTCCTCCCTCAGCCTTCCTTCCCCACGGCCGGCCGCCTCCTCGCAGCCCCGGAGCTGAGGCCGCCGCGGCTGTGGCGGCCGAGCCCTCAGTCATGGCCTCGGGCGACACCCTCTACATCGCCACGGACGGCTCGGAGATGCCGGCCGAGATCGTGGAGCTGCACGAGATCGAGGTGGAGACCATCCCCGTGGAGACCATCGAGACCAcggtggtgggcgaggaggaggaggaggaggacgacgacgaggacggcggcggcggcgaccacggcggcgggggcggccacgggcacgCGGGccaccaccaccaccaccaccaccatcaccaccaccaccCGCCCATGATCGCGCTGCAGCCGCTCGTCACCGACGACCCGACCCAGGTGCACCACCACCAGGAGGTGATCCTGGTGCAGACGCGCGAGGAGGTGGTGGGCGGCGACGACTCGGACGGGCTGCGCGCCGAGGACGGCTTCGAGGACCAGATCCTCATCCCGGTGCCCGCGCCGGCCGGCGGCGACGACGACTACATCGAGCAGACGCTGGTCACCGTggcggcggccggcaagagcggcggcggcggcggcggctcgtcgtcgtcgggcggcggccgcgtcaagaagggcggcggcaagaagagcggcaagaagggctacctcggcggcggggccggggcggcgggcggcgcggacgcgggcAACAAGAAGTGGGAGCAGAAGCAGGTGCAGATCAAGACCCTGGAGGGCGAGTTCTCGGTCACCATGTGGTCCTCAGATGAAAAAAAAGATATCGACCATGAGACGGTGGTTGAAGAACAGATCATTGGAGAGAACTCACCTCCTGATTATTCAGAATATATGACAGGAAAGAAACTCCCTCCTGGAGGGATACCTGGCATTGACCTCTCAGATCCCAAACAACTAGCAGAATTTGCTAGAATGAAGCCAAGAAAAATTAAAGAAGATGATGCTCCAAGAACAATAGCTTGCCCTCATAAAGGCTGCACAAAGATGTTCAGGGATAACTCTGCCATGAGAAAACATCTGCACACCCACGGCCCCAGAGTCCACGTCTGTGCAGAGTGTGGCAAAGCTTTTGTTGAGAGCTCCAAGCTAAAACGACACCAACTGGTCCATACTGGAGAGAAGCCCTTTCAGTGCACGTTCGAAGGCTGCGGGAAACGCTTTTCACTGGACTTCAATTTGCGCACACATGTGCGAATCCACACCGGAGACAGGCCCTATGTGTGCCCCTTCGACGGTTGTAATAAGAAGTTTGCTCAGTCAACTAACCTGAAATCTCACATCTTAACACACGCTAAGGCCAAAAACAACCAGTGAGAAGAAGAGAGAAGACCCTCCTCAGCCTCGGGAAGCATCTTCCAGGAGTGTGATTGGGAATAAACACGCCTCTCCTTTGTATATTGTTTCTAGAAAAGAATTTTAAAAATGAATCCTACATACCCAAGGGACATGTTTTGATAAAGTAGTaaaaattaaaaaaaaaaaaaaaaaCTTTAATAAGATGACATTGCTAAGATGCTCTATCTTGCTCTGTAATCTCGTTTCAAAACCACGGTGTTTTTGTAAAGTGTGGTCCCAACAGGAGGACGATTCATGAACTTCACATCAAAAGACAATTCTTTATACAACAGTGCTAAAAATGGGACTTCTTTTCACATTCTTATAAATATGAAGCTCACCTGTTGCTTACAATTTTTTTAATTTTGTATTTTCCAAGTGTGCATATTGTACACTTTTTGGGGATATGCTTAGTAATGCTATGTGTGATTTTTCTGGAGGTTGATAACTTTGCTTGCAGTAGATTTTCTTTAAAAGAATGGGCAGTTACATGCATACTTCAAAAGTATTTTTCCTGTACAAAAAAAAAGTTATATAGGTTTTGTTTGCTATCTTAATTTTGGTTGTATTCTTTGATGTTAACACATTTTGTATAATTGTATCGTATAGCTGTATTGAATCATGTAGTATCAAATATTAGATGTGATTTAATAGTGTTAATCAATTTAAACCCA

Publications

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