Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name RPS23P13
Plot displaying the genomic locations of a retrocopy (in chr17) and its respective parental gene (in chr5). Each line represents a retrocopy.
Species Ovis aries
Coordinates chr17:14325509-14325886  UCSC
Strand +
Parental Sequence XM_004009060.4
Parental seq. overlap 305 bp
Parental seq. overlap (%) 40.2%
Genomic Region Intergenic
Retrocopy Summary RPS23P13, located on chr17:14325509-14325886, is a retrocopy of the parental gene RPS23. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPS23
Full Name N/A
Also known as -
Coordinate chr5:86084937-86086935
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Mouse lemur Microcebus murinus RPS23P3
Pig Sus scrofa RPS23P6
Cow Bos taurus RPS23P10
Dolphin Tursiops truncatus RPS23P3
Horse Equus caballus RPS23P1
Cat Felis catus RPS23P6
Greater horseshoe bat Rhinolophus ferrumequinum RPS23P7
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPS23P13
GGAAGTGGCATGATAAACAATACAGGAAAGCCCATTTGGGCCAGCCCTGAAGATCAGCCCCTTTGGAGGCACTTCACATGCAAAGGGAATTTTGCTAGAATGTCAGAGTTGAAGCCAAACAGGTAAATTCTAGCTTTGAGAAGTATTTCAGGGTCCAGCTGATCAATAAGAGCAAGAAACTCAGGTTTCTTACCCAATGATGATTGCTCGAACGTTACTGCAGAAAACAATGAAGTTTCCGTTGCTGGATTTGACCGCAAAATAGCATGCTCTTGGTGACGTTCCTAGAGTCCACTTTAAAGTTGTCTAAGTAGCCAGTGTCCGTCTTGGCCTTatgcaaaagcaagaagaaaagactAAGATGAAAAGTTTTGATGA
>XM_004009060.4
TTGGTAGTCGCGGTTCCTTCCGTCCTCGGTATTcgcataaaaagaaacaaatcacaGCGAACATTAGATATCCCCGAATCGCACACAAATTAGATAAGACGCAGATTCTGGAAAGTGGTGCTGGCTTGTCGCTTTCTACCGAGGGGCGGCAGCCGGGATCAGGCGCGGCGCAGACAGCCTCAAGGGCCCTCGGCTGGGCGGGGCTTGCTCGCGGGGGCTTGTGGCTCCTTCCTGCGCTTCCTCTCTCTTTCGCTCAGGCCCGTGGCGCCGGCAGGATGGGCAAGTGTCGCGGTCTTCGTACTGCCAGGAAGCTCCGTAGCCACCGACGAGACCAGAAGTGGCATGATAAGCAGTACAAGAAAGCCCATCTGGGCACAGCCCTGAAGGCCAACCCTTTTGGCGGCGCTTCTCACGCCAAGGGAATTGTGCTGGAAAAAGTAGGAGTTGAAGCCAAACAGCCAAATTCTGCTATCAGGAAGTGTGTCAGGGTTCAACTAATCAAGAATGGCAAAAAAATCACTGCTTTTGTACCCAATGATGGTTGCTTGAATTTTATTGAGGAAAATGATGAAGTTCTGGTTGCTGGATTTGGTCGCAAAGGTCATGCTGTTGGTGACATTCCTGGAGTCCGCTTTAAGGTTGTCAAAGTAGCCAATGTCTCTCTTTTGGCTTTGTACAAAGGCAAGAAGGAGAGACCAAGATCATAAATTTTGATGATGAAAGCGCGATAGTAATAAATTTTCCTATACCAAAAA

Publications

PMID - Link Title