Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPS23P1
Plot displaying the genomic locations of a retrocopy (in chr2) and its respective parental gene (in chr14). Each line represents a retrocopy.
Species Equus caballus
Coordinates chr2:87510509-87510869  UCSC
Strand +
Parental Sequence XM_001504640.5
Parental seq. overlap 297 bp
Parental seq. overlap (%) 46.9%
Genomic Region Intergenic
Retrocopy Summary RPS23P1, located on chr2:87510509-87510869, is a retrocopy of the parental gene RPS23. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPS23
Full Name ribosomal protein S23
Also known as -
Coordinate chr14:84362291-84364479
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPS23P4
Chimpanzee Pan troglodytes RPS23P4
Bonobo Pan paniscus RPS23P4
Gorilla Gorilla gorilla RPS23P2
Green monkey Chlorocebus sabaeus RPS23P3
Crab-eating macaque Macaca fascicularis RPS23P4
Rhesus Macaca mulatta RPS23P4
Baboon Papio anubis RPS23P3
Mouse lemur Microcebus murinus RPS23P3
Pig Sus scrofa RPS23P6
Cow Bos taurus RPS23P10
Sheep Ovis aries RPS23P13
Dolphin Tursiops truncatus RPS23P3
Cat Felis catus RPS23P6
Greater horseshoe bat Rhinolophus ferrumequinum RPS23P7
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPS23P1
ACAGTACAAGAAAGCCCACTTGGGCCCAGCCCTGAAGGACAACGCGTTTGGAGGCGCTTCACGTGCAAAGGGAATTTTGCTGGAAAAAGTCAGGGTTGAAGGTAAATAGCTCACTTCTGCCAACAGGAAGTGTGTCAAGGGCCAGCTGACGAAGAATAACAAGAAACTCACAGCTTTCATACCCAATGACGATTGTTTGAACGTTACTGTGGAGAACAATGAAGTTCTGGCTGCAGGACTTGGTTGTAAAGGTCATTCTGTCAGTGACATTCTTGGAATCCACTTTAGGGTTGTCAACGTAGCCAATGTCTCTCTCTTGGCCCTAGGTAAAGGCAAGAAGAAAAGACCAAGATCATAAGTT
>XM_001504640.5
TGTCGTATTCAAACGAGAGGCGCCAGCCGCGGATCAGGCGCGGCGCAGACAGCCGCAGGGGTCCTTGGCTGGGCGGGGCTTGCTCGCGGTGGCTTGTGGCTCCTTCCTGTAGGGCTTCCCTCTTTTGCTCAGGCCCGTGGCGCCGGCAGGATGGGCAAGTGTCGCGGTCTTCGTACGGCCCGGAAGCTCCGCAGCCACCGACGAGATCAGAAGTGGCACGATAAGCAGTACAAGAAAGCCCATCTGGGCACAGCCCTGAAGGCCAACCCTTTCGGAGGCGCTTCCCATGCGAAGGGAATTGTGCTGGAAAAAGTAGGAGTTGAAGCCAAACAGCCAAATTCTGCCATCAGGAAGTGTGTCAGGGTGCAGCTGATCAAGAACGGCAAAAAAATCACAGCCTTTGTGCCCAATGATGGTTGCTTGAATTTCATTGAGGAAAACGACGAAGTTCTGGTTGCTGGATTTGGTCGCAAAGGTCATGCTGTTGGTGACATTCCTGGAGTCCGCTTTAAGGTTGTCAAAGTAGCCAATGTCTCTCTTTTGGCCTTATACAAAGGCAAGAAGGAAAGACCAAGATCATAAGTTTGGATGGTGAAAGCGTGGTAGTAATAAATTTTCATATGCCAAAATTA

Publications

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