Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name HSPA8P7
Plot displaying the genomic locations of a retrocopy (in chr24) and its respective parental gene (in chr7). Each line represents a retrocopy.
Species Equus caballus
Coordinates chr24:11197165-11197506  UCSC
Strand +
Parental Sequence NM_001081778.2
Parental seq. overlap 269 bp
Parental seq. overlap (%) 12%
Genomic Region Intergenic
Retrocopy Summary HSPA8P7, located on chr24:11197165-11197506, is a retrocopy of the parental gene HSPA8. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name HSPA8
Full Name N/A
Also known as -
Coordinate chr7:30897972-30902571
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Orangutan Pongo abelii HSPA8P12
Gibbon Nomascus leucogenys HSPA8P1
Green monkey Chlorocebus sabaeus HSPA8P11
Crab-eating macaque Macaca fascicularis LOC101925240P2
Rhesus Macaca mulatta HSPA8P8
Baboon Papio anubis HSPA8P8
Golden snub-nosed monkey Rhinopithecus roxellana HSPA8P6
Marmoset Callithrix jacchus HSPA8P12
Rat Rattus norvegicus Hspa8P23
Chinese hamster Cricetulus griseus Hspa8_1P1
Rabbit Oryctolagus cuniculus HSPA8P11
Pig Sus scrofa HSPA8P4
Cow Bos taurus HSPA8P5
Dolphin Tursiops truncatus HSPA8P3
Panda Ailuropoda melanoleuca HSPA8P6
Cat Felis catus HSPA8P5
Pale spear-nosed bat Phyllostomus discolor HSPA8P1
Velvety free-tailed bat Molossus molossus HSPA8P2
Greater mouse-eared bat Myotis myotis HSPA8P3
Kuhl's pipistrelle Pipistrellus kuhlii HSPA8P3
Greater horseshoe bat Rhinolophus ferrumequinum HSPA8P15
Sloth Choloepus didactylus HSPA8P4
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Sheep Ovis aries Without Homology
Dog Canis familiaris Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>HSPA8P7
GAACACCACGATCCCCACCAAGCAGACGCAGACCTTCACCACTTACTCAGACAACCAGAGCAGCGTGCTGGTGCAGGTGTACGAGGGCGAACGGGCCATGACCAAGGACAATAACCTGCTGGGCAAGTTCGACCTGACCGGGATTCCCCCGGCGCCCCGCGGCGTCCCCCAGATCGAGGTCACCTTCGACATCGACGCCAACGGCATCCTCAACGTCACCGCCGCCGACAAGAGCACCGGTAAAGAAAACAAAATCACCATCACCAACGATAAGGGTCGTCTGAGCAAGGACGACATTGACCGGATGGTGCAGGAGGCGGAGCGGTACAAGTCGGAAGATGA
>NM_001081778.2
CTCATTGAACGCGGCTGCAGCTTTCTAGGTTCGCGTCGTTTTCGCAGCCTGAGCCGGTCTACGCTCAAGCAACCATGTCTAAGGGACCTGCAGTTGGCATTGATCTTGGCACCACCTACTCGTGTGTGGGTGTTTTCCAGCATGGAAAAGTGGAAATAATAGCCAATGATCAAGGAAACCGAACCACCCCGAGCTATGTCGCTTTTACTGACACGGAACGATTGATCGGTGATGCCGCAAAGAACCAAGTTGCAATGAACCCGACCAACACGGTTTTTGATGCCAAACGTCTGATTGGACGTAGATTTGATGATGCTGTTGTCCAGTCTGATATGAAGCATTGGCCCTTCATGGTGGTGAATGATGCAGGCAGGCCCAAGGTCCAAGTAGAATACAAGGGAGAGACAAAAAGTTTCTATCCAGAGGAGGTGTCGTCTATGGTTTTGACAAAGATGAAGGAAATCGCAGAAGCCTACCTTGGGAAGACTGTTACCAATGCTGTTGTCACAGTACCTGCTTACTTTAATGACTCTCAGCGTCAGGCTACCAAAGATGCTGGAACTATTGCTGGTCTCAATGTACTTAGAATCATCAATGAGCCAACTGCTGCTGCTATTGCTTACGGTTTAGACAAAAAGGTTGGAGCTGAGAGAAACGTACTGATCTTTGACTTAGGAGGTGGCACTTTTGATGTGTCAATCCTCACTATTGAAGATGGAATCTTTGAGGTCAAATCTACAGCTGGAGACACCCACTTAGGTGGAGAAGACTTTGACAACCGAATGGTCAACCATTTTATCGCAGAATTCAAGCGCAAGCATAAGAAGGACATCAGTGAGAACAAGAGGGCCGTCCGACGCCTGCGCACTGCTTGTGAACGTGCTAAGCGTACTCTCTCTTCTAGCACCCAGGCCAGTATTGAGATTGATTCACTCTATGAAGGAATCGACTTCTATACCTCTATTACCCGTGCCCGATTTGAAGAATTGAATGCTGACCTGTTCCGTGGCACCCTGGACCCTGTAGAGAAAGCCCTTCGGGATGCCAAGCTGGACAAGTCCCAGATTCATGATATTGTCCTAGTGGGTGGTTCTACCCGCATCCCCAAGATTCAGAAACTTCTACAGGACTTCTTCAATGGAAAAGAACTGAATAAGAGCATCAACCCTGATGAGGCTGTTGCTTATGGTGCAGCTGTCCAGGCAGCCATCCTATCTGGAGACAAGTCTGAAAATGTTCAAGATTTGCTGCTGTTGGATGTCACTCCTCTTTCCCTTGGCATTGAAACTGCTGGTGGAGTCATGACTGTGCTCATAAAGCGCAACACTACGATTCCTACCAAGCAGACACAAACCTTCACTACCTACTCTGACAACCAGCCTGGTGTGCTCATTCAGGTTTATGAAGGTGAGCGTGCCATGACCAAGGATAACAATCTGCTTGGCAAGTTTGAACTCACAGGCATACCTCCAGCCCCTCGTGGTGTTCCTCAGATTGAAGTCACTTTTGATATTGATGCCAATGGCATTCTCAATGTCTCTGCTGTGGACAAGAGTACAGGGAAAGAAAACAAGATCACCATCACTAACGACAAGGGTCGTTTGAGCAAGGAAGACATAGAGCGCATGGTCCAGGAGGCTGAGAAGTACAAGGCTGAAGATGAAAAGCAGCGGGACAAGGTGTCTTCTAAGAATTCACTTGAGTCCTATGCATTCAACATGAAAGCAACTGTTGAAGATGAAAAACTTCAAGGCAAGATCAATGACGAGGACAAACAGAAGATTCTTGACAAGTGCAATGAAATCATCAACTGGCTTGACAAGAACCAGACTGCAGAGAAGGAAGAATTTGAACATCAGCAGAAAGAGCTGGAGAAAGTTTGCAACCCCATCATTACCAAGCTGTACCAGAGTGCAGGAGGCATGCCAGGAGGAATGCCTGGGGGTTTCCCTGGTGGTGGAGCTCCTCCATCTGGTGGTGCCTCCTCTGGACCCACCATTGAAGAGGTGGATTAAGCCAACCCGAGCATAGATTTAGCATTGTTCCACATAAAACAATTGAAGGACCCAAATTTGTAGCAAATTCCATGGCAGTTTTAAAGTTGAGCTGCTATAATAAATAACTGGGCATTCTTGATACTTGAATATGGAATATATGCACAGGGAAAGGAAAATAACATTGCACTTTATAGGCACTGTATTGTAAGTGGAAAATGCAATGTCTTAAATAAAACTGTATTTAAAATTGGC

Publications

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