Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name PAPOLAP2
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr14). Each line represents a retrocopy.
Species Ailuropoda melanoleuca
Coordinates chrX:29731195-29731941  UCSC
Strand -
Parental Sequence XM_034642904.1
Parental seq. overlap 568 bp
Parental seq. overlap (%) 12.7%
Genomic Region Intergenic
Retrocopy Summary PAPOLAP2, located on chrX:29731195-29731941, is a retrocopy of the parental gene PAPOLA. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name PAPOLA
Full Name N/A
Also known as -
Coordinate chr14:34159052-34216468
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens PAPOLAP1
Chimpanzee Pan troglodytes PAPOLAP2
Bonobo Pan paniscus PAPOLAP2
Gorilla Gorilla gorilla PAPOLAP2
Orangutan Pongo abelii PAPOLAP1
Gibbon Nomascus leucogenys PAPOLAP2
Green monkey Chlorocebus sabaeus PAPOLAP2
Crab-eating macaque Macaca fascicularis PAPOLAP2
Rhesus Macaca mulatta PAPOLAP2
Baboon Papio anubis PAPOLAP2
Golden snub-nosed monkey Rhinopithecus roxellana PAPOLAP2
Mouse lemur Microcebus murinus PAPOLAP2
Pig Sus scrofa PAPOLAP1
Cow Bos taurus PAPOLAP1
Sheep Ovis aries PAPOLAP1
Dolphin Tursiops truncatus PAPOLAP4
Horse Equus caballus PAPOLAP2
Dog Canis familiaris PAPOLAP2
Egyptian rousette Rousettus aegyptiacus PAPOLAP2
Sloth Choloepus didactylus PAPOLAP16
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>PAPOLAP2
ACCTACTAGTGCTCTGAAGACGGGTCCACTGACTTGTTCTGGCAACTCCTGGGACAGTAACAGTCCTGCTCCAATTGTAACAGCAACATGCATGACCAACATTCAGGTTAGTGAAGTTTCTGTGTCACAGGTAAATTCCAGTGAAAGTTCAGGGGGTACATCACATATAAGCATGTCTCAAACTTCCACACAACCAACCATTTCTCCACGACCAACGCCTACAGTCCCTAGAGTCCATTCTTCAACATGCCTTGTAAACCAACCACCTAGACCTTCAGGGAATGTAGTAGCAAAATGAACTAATCCTATAGTAGGAGTCAAGAGGACATCCTCACCAAATAAAGAAGAGTGTcccaagaaaaccaaaacagaagGGAATAAAACAAGTAAAGAAGCTAACAGTCTTGTTTTGAGTGgacatgagaaaacagaaataaatgaacaactttatatgaagaaaatgacagCTCAGCTAGAAACTAAGGGGCTTCTCTGTTGGCCCCTCAGAAAACACCTAGTATGGACCTTTCCAATATCCTCCGTCAGACTGCAAATCCTATTCCTACTCTCAAAGATTCAATAAAACTGAGATTTACCTGTCAACAACTTCAGGAATCCATAAGCAGTATCTGCCAACTCAGCCTGTTGTCTTCAAGTGCTAAAAAGGAGAACAGAGTGGACAAGGTTAAcatgactgaaaaagaaaaagtttaggTTTATTTGGTGACCTCCCTCACTGGGCTAATT
>XM_034642904.1
ggcTCCGCGGCCGTCGGGCCGGGGGCCTTCCCCTTCCAGAACGGCCGGGGGAATCTGAACCTTAGTGCTCCAGCTTCTCCGCCCCGtccgggggaaaaaaaaagaaaaagagaaaacaatgccCGGTGGCGGGGAAGGAAGGCCCCGTTCGTTGCGGGGTCTGCACACGGCGTTCAGTCCAGttacaacgcagggatcacaacAAACACAGCCGCCCCAGAAGCACTATGGCATTACCTCTCCTATCAGCTTAGCAGCCCCCAAGGAGACCGACTGCCTGCTTACACAGAAACTAATTGAGACTCTGAAGCCCTTTGGGGTttttgaagaggaagaggaactgCAGCGCAGGATTTTAattttgggaaaattaaataaCCTGGTAAAAGAGTGGATACGAGAAATCAGTGAAAGCAAGAATCTTCCACAATCTGTAATTGAAAATGTTGGAGgaaaaatttttacatttggaTCTTACAGATTAGGAGTACATACAAAAGgtgcTGATATTGATGCGTTGTGTGTTGCACCAAGACATGTTGATCGAAGTGACTTTTTCACCTCATTCTATGATAAGTTGAAATtacaggaagaagtaaaagattTAAGAGCTGTTGAAGAGGCATTTGTACCAGTTATCAAACTGTGTTTTGATGGGATAGAGatTGATATTTTGTTTGCAAGATTAGCACTGCAGACTATTCCAGAAGACTTGGACTTACGAGATGACAGTCTGCTTAAGAATTTAGATATAAGATGCATAAGAAGTCTTAACGGTTGCAGGGTAACCGATGAAATTTTACACCTAGTACCAAACATTGACAACTTCAGGTTAACTCTGAGAGCTATCAAACTGTGGGCCAAACGCCACAACATCTATTCCAATATATTAGGTTTCCTCGGTGGTGTTTCCTGGGCTATGCTAGTAGCAAGAACTTGCCAGCTTTATCCAAATGCAATAGCATCAACTCTTGTACATaaatttttcttggtattttctaAATGGGAATGGCCAAATCCAGTGCTATTGAAACAGCCTGAAGAATGCAATCTTAATTTGCCTGTATGGGACCCAAGGGTAAACCCCAGTGATAGGTACCATCTTATGCCTATTATTACACCAGCATACCCACAACAGAACTCCACGTACAATGTGTCCGTTTCAACACGGATGGTCATGGTTGAGGAGTTTAAACAAGgtCTTGCTATCACAGATGAAATTTTGCTGAGTAAGGCAGAGTGGTCCAAACTTTTTGAAGCTCCAAACTTCTTTCAAAAGTACAAGCATTATATTGTACTTCTAGCAAGTGCACCAACAGAAAAACAACGCCTGGAATGGGTGGGCTTGGTGGAATCAAAAATCCGAATCCTGGTTGGAAGTTTGGAGAAGAATGAATTTATTACACTGGCTCATGTGAATCCCCAGTCATTTCCAGCACCCAAAGAAAATCCTGACAAGGAAGAATTTCGCACGATGTGGGTGATTGGgttagtgtttaaaaaaacagaaaattctgaaaatctCAGTGTTGATCTCACCTATGATATTCAGTCTTTCACAGATACAGTTTATAGGCAAGCAATAAACAGCAAGATGTTTGAGGTGGACATGAAGATTGCTGCAATGCATGTAAAAAGAAAGCAACTTCATCAGCTACTACCTAATCATgttcttcagaaaaagaaaaagCATTCAACAGAAGGTGTCAGATTGACGCCTCTAAATGACAGCAGCCTCGATTTGTCTATGGACAGTGATAACAGCATGTCCGTGCCTTCACCTACTAGTGCTATGAAGACCAGTCCATTGAACAGTTCTGGCAGCTCTCAGGGaaacagTCCTGCTCCAGCTGTAACAGCAGCATCTGTGACCAACATACAGGCTACTGAAGTTTCTGTGCCACAAGTAAATTCCAGTGAAAGCTCAGGGGGTACATCGAGTGAAAGCATTCCTCAAACTGCCACACAACCAGCCATTTCACCACCACCAAAGCCTACAGTCTCCAGAGTTGTTTCTTCAACACGTCTGGTAAACCCACCACCTAGACCTTCAGGAAATGCAGCAACAAAAATACCTACTCCTATAGTAGGAGTCAAGAGGACATCCTCACCTCATAAAGAAGAGAGTCCtaagaaaaccaaaacagaagaGGAACAACTTGATACAGAGACAAGTACAACTCAATCAGAAACTATTCACACAGCGGCTTCTCTGTTGGCCTCTCAGAAAACATCCAGTACAGACCTTTCTGATATCCCTGCTCTCCCTGCAAATCCTATTCCTGTTATCAAGAATTCAATAAAACTGAGATTGAATCGGTAAAAACAACCTCAGGGGTCCATAAACAATATCTGCCAACTCAACCTGTTGTCTTCAAATGCTAAAAAAAGGAGAATGGAGGGTACAAGACTAGACATGACTGAAAATGgatttaggttttttttgtgACCTCCCTTACTGGGCTAATCAGCACTTGATCGGAAGTCCAGGTTAGTATGTGAAGCCAGgagtactattattattgtgttaGCAACAGTTgcattaactatttaaaaaaattactgcctttaaaaaaaaaaaaaaaacacctcaagcTATATTTGTATCCATAATTGACATCTGGATTGGGTTTATGTTTGATGCATTGTTTGGAAAAATTTGCAATACAAACTGGCATAAGAATTCCTTGTTCGATGATgcacttttatgtatttttttattagaaagtagagctaattttagattttcagcttgatggattttcattttttcctgaaaaatttcCTTTACCATTAGTCTTCAAATTGGATACCATTGTGCAGTGACGCACTGTTCTACTTCAGAGAAAGGGTGAGAGGACATCTAGTTCAGTCCCTGTGCGGTAGCTGCAacccttaaaaatgaaatatcaacTCTAAGGGTATATATTTGACCTTGAAAGAATACTTAGGAAATAGTTGGTTTTGATGGGGTCATGATTAAGGAAAGATATATTGGTTTTATTTATAGAATTGTTCAGAGTGCATACAAATCAGCGATCAGCGGGCAAGTATTTTTCTTTGAGCTCATTAAAGCTCCATATTCTTTTGCCTTCAATCTGTTGTCTTTGAAACAAAGCTtttgctccctcccccttttctttttccctttttgcttgtATGCATAAGGTAGAACTTTTTCATAAGAAACAAATGCCAGTATTTTCTTAAGCCATGATGTGAAACCAATGATCCTGTGGCCACGTGGCACAGAACACTAAATTTCGGTCCTGTGGCTGAAACTTTAGGGTGACTAAAAGAAATGCGTGTGGAACATGATGCCCTAACAGGGACGCCATTTGATCTCTGGACATGCGGAATTTTGTACACTCCACAGAACTCCTCTCTGTAGTAAAgttgattttcaattttaaacaTGTAGGCAAAAAGGCAAAATTTTCTCCAagaattttaaactaatttttatttttaaatggttgaccAAAATTTGTCAGTAAATTTTACAtgtagaaacattttaaaaatcatttctagcAAGCACTTGGCATCTAGTCAGCTCTCtactcctttttcattttgttctatcCGATCAATAGATTAGGAACTCTTTTCTGCAGAGAACAGAAGTCCTCGTAATTAAGCAGCAGAGCGCCCATCGTCACGAAGTAGGCGGTGCCAGATGTTGATAAACTTAGTTACTCTTTCCTAATCTGGACAAAGCAGACCTAACAGATTTTCTGACGAGCATGTTTATGAATCTTCCATTGTGCTCCATTCTATCACATGTGCATTTTTCATGTTAAACTGCAGTTACTTAAACTCTTCCCCGTCCttctaaattaattttccaaagttGGAGTGTAGTCTTTCCCCTTAGGCTATGCATTAATTGAGGCTTTGTTTTCACCGTATCTGATGATGTCTAGTAGACAGTGTTTCCGCTTCCCACATCTTCGCTCCGCACACTCAccttgcccttcctcccaccaccTAAGGAAAAAAGATGGTCATGCTAACAGGTGAAGTGTACAAGGTGTCTGTGTGTTTTGTGTAGCTTCAGAGTTAGATTGAAATTGCCAGGCACAGATTTAGTCTTGTCATTTTGTTTAcacattgggggaaaaaattcagtttattaaaCGTTTCATGTAACTGCACCCAAGTTTTGCCAGCTGGAAACTTGGACCTTTTCTGTGTAGTGACTTTTTAATTCTAGTTTTCATAACCTGGAGATCAGACTGTTGCTTTCGCATGATGTATGTAGTGTCTCATGACTggagtttgctttgttttatagtATCTGTACTCCTTGTATTTTTCAAGAGCTATTTTGTAAACAGATGATGTATTTCTCCattgaaaacacaataaaaaaaaaaaaacagcacaa

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