Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name FAM50AP1
Plot displaying the genomic locations of a retrocopy (in chrB2) and its respective parental gene (in chrX). Each line represents a retrocopy.
Species Felis catus
Coordinates chrB2:25058863-25059843  UCSC
Strand -
Parental Sequence XM_023249089.1
Parental seq. overlap 811 bp
Parental seq. overlap (%) 63.5%
Genomic Region Intergenic
Retrocopy Summary FAM50AP1, located on chrB2:25058863-25059843, is a retrocopy of the parental gene FAM50A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name FAM50A
Full Name family with sequence similarity 50 member A
Also known as -
Coordinate chrX:129285560-129292455
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens FAM50AP1
Chimpanzee Pan troglodytes FAM50AP1
Bonobo Pan paniscus FAM50AP1
Gorilla Gorilla gorilla FAM50AP1
Orangutan Pongo abelii FAM50AP1
Gibbon Nomascus leucogenys FAM50AP1
Green monkey Chlorocebus sabaeus FAM50AP1
Crab-eating macaque Macaca fascicularis FAM50AP1
Rhesus Macaca mulatta FAM50AP1
Baboon Papio anubis FAM50AP1
Golden snub-nosed monkey Rhinopithecus roxellana FAM50AP1
Marmoset Callithrix jacchus FAM50AP2
Mouse lemur Microcebus murinus FAM50AP1
Mouse Mus musculus Fam50aP1
Rat Rattus norvegicus Fam50aP1
Horse Equus caballus FAM50AP1
Panda Ailuropoda melanoleuca FAM50AP1
Greater horseshoe bat Rhinolophus ferrumequinum FAM50AP1
Egyptian rousette Rousettus aegyptiacus FAM50AP2
Sloth Choloepus didactylus FAM50AP1
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Dog Canis familiaris Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>FAM50AP1
GAGGCCGGCCGGGCCATGCACCTGATCAAGAAGCGGGAAAAGCAGAAGGAGCAGATGGAGGTGCTGAAGCAGCGGATCGCCGAGGAGACCCTCATCAAGTCGAAGGTGGACAAGAAATTCTCGGCTCATTACGACGCCGTGGAGGCCGAGCTGAAGTCGAGCACGGTGGGCCTGGTGACCCTGAACGACATGAAGGCCAAGCAGGAGGCCCTGCTCAAGGAGCGGGAGATGCAGCTGGCCAAGAGGGAGCAGCTGGAGGCGCGGCGGCTGCAGCTGGAGGCACTGCGGGAGAAGGAGCGTAAGCAGGAGCAGAAGCGAAAGATCTGCAGCCTGTCCTTCACGCTCGACGAGGGCGACGAGGGCAACGTGGATGAGGAGGTGGCGGCTAGGGAGCAGCCCACGTCGGCGGGGCTGAGCAAGAAGAAGAACCTGGGGAAGAATCCAGATGTGGACACGAGCTTCCTGCCTGACCGCGACCGCGAGGAGGAGGAGAACCGGCTGCGGGAGCAGCTGCGGCAGGAGTGGGAGGCCAGGCGCGACAAGGTGAAGCGCGAGGAGATGGAGGTCACGTTCAGCTACTGGGACGGCTCCGGGCACCGGCGCACGGTGCGCATCCACAAGGGTGGCACCGTGCAGCAGTTCCTGAAAAGGGCCCTGCAGGGGCTGCGAAAGGACTTCCGTGAGCTGCGGTCGGCGGGCGTGGAGCAGCTCATGTACATCAAGGAGGACCTGATCCTGCCCCACTACCACACCTTCTACGACTTCATCGTCACCAAGGCCCGGGGCAAGAGTGGGCCGCTCTTCAACTTCGACGTGCACGATGACGTGCGGCTGCTGAGCGACGCCACCATGGAAAAGGATGAGTCACACGCGGGCAAGGTGGTGCTGCGGAGCTGGTACGAGAAGAACAAGCACATCTTCCCCGCGAGCCGCTGGGAACCCTACGACCCTGAAAAGAAGTGGGACAAGTACACGATCCGA
>XM_023249089.1
GCACGGCCGCCGCCGTCCCTGCAGCCTCTGAGACTCCAGCAGGCCGCTGTcgccgccgtcgccgccgccgccgccgccgccATGGCTCAGTACAAGGGCGCCGCGAGCGAGGCGGGCCGCGCCATGCACCTGATGAAGAAGCGGGAGAAGCAGCGCGAGCAGATGGAGCAGATGAAGCAACGGATTGCCGAGGAGAACATAATGAAATCTAACATCGACAAGAAGTTCTCTGCGCACTACGACGCCGTGGAGGCGGAGCTCAAGTCCAGCACCGTCGGTCTCGTGACCCTGAATGACATGAAGGCCAAGCAAGAGGCGCTGGTGAAAGAGAGGGAGAAGCAGCTGGCCAAGAAAGAGCAGTCGAAGGAGCTGCAATTGAAGCTGGAGAAGCTACGAGAGAAGGAGCGCAAGAAGGAGGCCAAGCGGAAGATCTCCAGCCTGTCCTTCACTCTggaggaagaggaggaggcaggtgacgaggatgaggaggtggctgtgtatgaggaggagctggagaggGAAGAGATCACTGCAAAGAAGAGGAAATTGGGGAAGAACCCAGATGTGGACACGAGCTTCCTGCCCGACCGAGACCGTGAGGAAGAGGAGAACCGGCTCCGGGAAGAGCTGCGGCAGGAGTGGGAGGCCAAGCAGGAGAAGATCAAGAGTGAGGAGATCGAAATCACCTTCAGTTACTGGGATGGCTCCGGCCACCGGCGGACGGTCAAGATGAAAAAGGGCAACACGATGCAGCAATTCCTGCAGAAGGCCCTTGAAATCCTGCGCAAAGACTTCAGCGAGCTCAGGTCAGCGGGGGTGGAGCAGCTCATGTACATCAAGGAGGACCTGATCATCCCCCACCACCACAGCTTCTATGACTTCATTGTCACCAAGGCCCGAGGGAAGAGTGGGCCACTCTTTAATTTCGACGTTCACGATGACGTGCGGCTGCTCAGTGACGCGACCGTggagaaggatgagTCACACGCGGGCAAGGTGGTGCTGCGGAGCTGGTACGAAAAGAACAAGCACATCTTCCCTGCCAGCCGCTGGGAGCCCTACGACCCCGAGAAAAAGTGGGACAAGTACACGATCCGGTGAATGTCGCCGCGCCTCCGACCCCCTCTGCCCCCTTCCCGGGGCCTCCGGACTCCGGGCGCTGCCCCCCACTGTCCCGGCCCTGACGTGAAGGGCCGGCTGGCCCCTGCCCCTGCCGTCGTCATTTACTGCCTTTTTCTTTTACGGTAAATAAACACGTGTCCGAGTCGGAA

Publications

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