Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name ShawlP1
Plot displaying the genomic locations of a retrocopy (in chr2L) and its respective parental gene (in chr2L). Each line represents a retrocopy.
Species Drosophila melanogaster
Coordinates chr2L:3722975-3723241  UCSC
Strand +
Parental Sequence NM_135440.2
Parental seq. overlap 218 bp
Parental seq. overlap (%) 3.6%
Genomic Region Intragenic (Shaw)
Retrocopy Summary ShawlP1, located on chr2L:3722975-3723241, is a retrocopy of the parental gene Shawl. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name Shawl
Full Name Shaw-like
Also known as CG13111|CG34366|CG4450|DmelCG34366|Dmel_CG13111|Dmel_CG4450|Kv3|Kv3.2|shawl
Coordinate chr2L:9370309-9415156
Strand -
Gene summary Predicted to enable delayed rectifier potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to be part of voltage-gated potassium channel complex. Predicted to be active in axon; dendrite membrane; and neuronal cell body membrane. Predicted to be integral component of membrane. Is expressed in adult head. Human ortholog(s) of this gene implicated in progressive myoclonus epilepsy 7 and spinocerebellar ataxia type 13. Orthologous to several human genes including KCNC1 (potassium voltage-gated channel subfamily C member 1); KCNC2 (potassium voltage-gated channel subfamily C member 2); and KCNC3 (potassium voltage-gated channel subfamily C member 3). [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology

Expression

Related Sequence

>ShawlP1
CCAATCCGCACAACGACTTCAACAGCATACCGCTGGGCCTGTGGTGGGCCCTGGTCACAATGACCACCGTCGGCTACGGCGACATGGCCCCCAAAACCTACATCGGCATGTTCGTGGGCGCCCTCTGCGCCCTGGCCGGCGTACTAACCATCGCACTGCCAGTGCCCGTCATCGTCAGCAACTTCGCCATGTACTACTCGCACACGCAGGCCAGGGCCAAACTGCCAAAGAAGCGGAGACGAGTGCTTCCCGTCGAGCAGCCGCGCC
>NM_135440.2
GTGGACGTGCGTGCGGCAAGAACCTGCTGGTAAAGCCTCGGAAAGGACCTGGTTAATGGTTTACGGTTTTGGCTACTGATTCCTGCTAACTGGCTAGTGTGGCGGACAGACGGCAGGATCTGTGGATTGCTGCGAATGTGCCAATATGTCAGCGCCGCgtatgtgggtgtgtgagtgagtgtgtgggtgtgAGACAGTGTCCTTGGGCGGACTAACAGGTTCCCCGTCTTCCCAAGTGTTAAAGTGCGGCCAAAAGTTTTTCGTGGTAAAAAAAAAAAATACGATAAAAAGTCTTAAATCTGCTGTCGCCTCTGATTTAAGCTGAAAGTTTGCCTGAAGGATTAAAAAAGCCATTTCGGACTTGTCATAGTCAAAGGACAACGAGTTGCCGTGGGCCAAAAGTGTATAAGGAATGGGAGAAGTAAGGTAGAGCTAAAACCATAAACCCAAACGAACAAGCTCAGCTCTGAGTGCAAAAAAAACACAAGAGGAAGAGAAAGTACATCCTGCGCCCAAGTCTAATTAGAAGAATCGCGCTGCGGCAACAGATTGCTCATACGCCGTGTGGATCGCGAGTGTTTTAGTGTCCGTGTAAACATAAGTACATATGTGCGTGTGACCCTATTTTGTGAAATCTGAAACAGAAAACTCCTCAAAAACCATTCGAGAGGTGTTAAAGTTTTTGTTCGATTTGCTGGCGGGCCGTCGAAGAATTAGTTTGGCATGCGGCTGCTGTTGCCACAACTGTTGCATGCAACATGGATGGCGAAAATCGGATCATACTCAATGTGAGCGGAATAAGATATGAAACCTATAAGGCCACGCTCAAGAAAATCCCCGCAACACGTCTCTCCCGACTGACCGAAGCCCTGGCCAACTATGATCCGGTGCTCAATGAATACTTTTTTGATCGCCACCCCGGGGTCTTCACCCAAATCCTCAACTATTACAGAACTGGAAAACTGCACTATCCAACTGACGTGTGTGGTCCGCTTTTCGAGGAGGAGCTGGAATTCTGGGGACTCGACTCAAATCAGGTAGAACCTTGCTGTTGGTCAACATATAGCATACATCGCGATACGCAAAACACCTTAGCCATATTAGATAAGCTAGATATTGAAAATGAAAAGCCCACGGAGGAGCAGATAGCTCGTCTATTTGGTTTTGAGGAGGCACTGAGCAACGGCGAGCTTAACTGCTGGCAGCGTATAAAACCCAAGATCTGGGCCATGTTCGATGAGCCATCCAGCTCCACGGGTGCCAAGATCGTTGCTGGCATGTCGGTTTTCTTTATATTTGTTTCTGTGATATCATTCTGCCTGAAGACCCATCCCGGCTTTCGTGTCGATCTGCCCTCCGGAGCCCACGATGCCCACGGGCCAGGAGCGGGTGGTCCACCCCACGGACACGATCCCATGGGAGAACCACCGCAGACCCATCAGTATCATCAGCACAGCATAACGCCGCCCAGCGGCAGCATCGGACCCACCTTTCGTGTCACAAACTACACGAGCTACAGCAGCGGTAACTTTACCGCTTCTGGCCAAGCCACGCCCATTGCCACCATTAAGGGCGGCCAGCGGCAGCGACTGAAACGGAATATCAACGGAAGTATCCTCAACGAGTTTATCGAAGAGAAGATATTGGGCCATAATGGGAGGAGAAAACACGGATGGATTGAGACCTATGGGCAGCCACACGAGGCCTTCTTCTACGTGGAACTGGTCTGCAACGTCTGGTTCTTCATCGAGGTCATCATCAGGCTGATTGTCTCCCCTAATTTGTGGCAGTTCATAAAGTCGCCGGTCAATATTATTGATTTTACGGCCACTTTGAGCTTTTACACGGACGTAATGCAGCGCATGGGTGAATATACGGGTCTTCTGGAGGCCTTTTCCATCGTCAGGATTATGCGACTGTTCAAGCTGACTCGCCATTCACCGGGCCTGAGAATCCTCATCCACACATTCAAGGCTTCGGCCAAGGAGCTTACTCTGTTGGTGTTCTTCCTCGTCCTGGGCATAGTTTTCTTCGCCAGTTTGGCTTACTATGCGGAGAAGTTGCAGGACAATCCGGACAACCAGTTCAAGAGCATACCTTTGGGTCTGTGGTGGGCCATTGTGACCATGACCACCGTGGGATATGGCGATGTGGCGCCCAAGACCTATCCGGGCATGTTCGTGGGTGCCCTCTGTGCTCTAGCCGGTGTGCTGACCATCGCCCTGCCCGTGCCCGTCATTGTCAGCAATTTCTCCATGTTCTACTCTCACACTCAGGCTCGCTCCAAGCTGCCCAAGAAGCGACGACGTGTCCTGCCGGTGGAGCAGCCGCGCCGCAAGAGGGAGCCAACTGCTCCGCATCGCGGAAGGACGAACGCCATCAAACAGACGCCACCCACTGGGCCGGGATTGGTGGCCGGTGGTGTGGTTCCAGTGGGAGCAGGAGGGCCGGGACTCGGTGGTCATGCGGTGGGTCATTCTGCTGCAGGGGCGCCAATGTTTAAGGACGCATTCGGCGGTGCCAAAATCGCGGACTACTTGAGCGTGCCGGCGGTGCAGAGCCTCCAGCCGCGGGCGGCGACGACTGGCCACGACTTCATGCTGCCGCTCCAGCCAAAACTTCTGGGCCCCCTGGAACGCAAGGATCAGCATCCGCTGCAACTGACTGCCCACAATTTGGCCTCGGACACGCACCAGCTGATGTACTCGGGCCACGCCCACTCGCAGCACAAGGTGGGCGGTGGGGCAGCGGTGCTAAATGTGCCGCCCACGTTGAGCATGTCGCACACCCAGATGCCACCCGGAATCGCCAGCATGGGTCAGCGGACGCCAAATCTGAGTTTTCGGCCCGCTCACGGGGCGTCGTCCCAGGTGGCCACTGTCCAGCAGCCCATTCCGCACTCCCATGCCTGCCACGCCTCCACGAATTGCAACATCAAGATTTCGGTTGCCTCCGCCGGTCTTTCGGTGGGATGTCCGGATGAGTTTCGGACTCCCAAGGTGACGCTGCTGGACGATCTCAGCGACGATGTCAACTCCTCGACGGATGACTGCGGGGACTGTTGTCTGGTGGACGACAGCGATACCTACGAGGGAACCACCATCAACAATGGTCCGAGTGGACAGGAGAACGGAACGGAAGCCATTGGGCTGGATGATGGCCTTCTGGATAACGATGGTGAGGATGAGGAGGACGGCGAGGGCAGCGGTGTGGGCGGGGATAGCGGCGATAGTCTCGGAGGGATCTACATTGGTCCCAGGCATTGATTGCCGGACATTAGCTGGGATTTCCACAACTGAAACGGACTTACCAACTTCTGACAGTACTGCCTAAAAAAGCTCTAAAACTGCGGTAAAAGTAGGGAAAAGGATTAAAGTTGGAAGATTTTTAGAGTATGTATAATGTGAATGAATGGTTTAACTGCTGAATGCAACTTTATCTGGCTAAAATTTTTAGAAACTTTAAAGCCAAGGTCAATCATACACAAGCCAATTTCATTGCCATTGGTCACTTAAACTTTCCGTATCTCTATTACTTTTATTAAATTCAGCTATTGCAGTTATTCCAAAGTTCTTTATTTCTATAATCTTCTTAAAAACATATAAAAGTTAAGGTCGTGGAAAGTAAATACTTTAAGTTCAAGTGTCATAGGAATTAAGAATAGCAAAGTTGGATAAGTATTTTCAAACGTCCACTTAAGAAAAACTATTAGAAAAATCATGTTCTCAAATGTTTAACGGAATCAGAGATTTTAAAGTCGTAACGAAGAGTTTTTAATGCTTATTTCAAAGTTTTCGAAAAGAAGATTGTGAAGATCACTGCCTCTACGATTGTAAACTTCTCAAATTAAATTTTATGGCACTGAGATAATTATCCATTAATTTTAAGATGGGACACATACAGTTTGCAACCATTTATCAGGACTTTTAATCAATCTTTGCTTTCTACTTACGCCAAGCAGTAAACAACATTCCTTGTCCGGCCAAGACAAACATCCGTAACATTTGTATCAGTGTCCTTATAACTGTCATGTTGACAACTGTCATTGGCAGCGTGCATGGAGGATTGTTTGCGTGCGTATGTGTGTGCAGCCGGGCACGTCCTGGCAAGGTCCTGCAAACAAAGGAAGAGTGAGTCTGCAAATGGACGGGGGTCAGAAGAGAAGCTACCCGCATACAAGGCAAACATATCGTCCACATAAATGTGACCACTTGTGTGCAGACAGTCAGAGATAGAGCACCGCCCACTTTCGCCCATTTCCCAAGCACTCCCATTTTCCTGTCCCGTCAAGGTGTTTATTGTGCAAATCTTGGGGCAAGAATTGCATGGCCAACTATAAATTCCCACACTTGACTCTCACGCTCCGTTTGCCCGGATCAGACCCTGAATCATGGCCAAAAAGTGTCATCGGGCTTGTTTATCTGACACATTGACTGCCACCATTTCAATGAACTGGCGAGCAAAAACTGTGTCGACAAGACGCACACAAAAGGCGACGACGACATCCAAAAACTAAAACGGCGACGACATTCGTGTCCTTGCTTTCCTGAcccatcccattccataccatccgatccTTACAGCAACCCACTTCCACCCAGCGCGATGGAGGTTTGTGTGGTTGACCTTGTAAATAGTTTTTTTTTTTTGGGGTCGCTGTGTTAAGTTTTCACTCTTCGACATTTATTTCCATAAATGTTAATTGATTTTTGCATGGATGCTGAAAAATGAATAAGCTGAACTCAAGGAAATGTAAATATTTGGGCATGACGGTCAAGAACTAACCAAATGAAAACGAAACTGAACATAAAGAAAGACAGTAGCAAACATATTTGACTTTAAATAAGGTTCAATGGTAATTTTTGGTCCAATATTTATAGTTTTTGATGTGCTAAAAACGATAAAATGACGAACAATTTTGATTCAGATAAGTAAGAAGGGGCTTTAGAAGTACAAAGCTCCTTAAACCACACCTTCTTGTAAGTCTAGGTGGAAAATAGATGGAAATGTAGATTTAAATAGATATCATGCCCAAACAATGAGGTGAGGGAGGTGATTCCAATTAGTCAGTAAAGTAAAATCCGCTGGTCTGAGTGTGCGTCGTTTTAAATTTAATCTTTATTACTTAGCTAATCTCTGATAAAAAGTTAAATAATTGCCTAATTGTTGTGTAAGGGTATTCCCGGAATCGACTTGCCGATTACACCTTTTTTCTCATTAAGATATGGATTCATTACTTTAAATTGTATAAGAGGAATGTTGCTTTAAATACTGTTCAATTTAGAAAAAAAACACATATTTTCTTATATTACAAAACAAAAATTTGATGTTGCGAAAATTCCGAAGAGTATATAAATATGTATTGTTAATTCGTGACACACTTTTTAAATAAAAGTTACATTTAAATACTTTTACATAATCTTAAATGAGAAAGGAAATGAATCTTTTGATATAAAAGATACTGCTGCGAACCAGTGCTCGTTGAAATAAGATCGTTTCAATAGAAATATAGTTAGTTTAAAAAACACAAGTGAGATACTAAACTAATATTAAACTTTTGCCTAGCAAATAACTAAGTTTAGACCGGTCAATGCAGAATAAAATATTGCATACAGAAGTTGATTGAAGAACTAAATCCTTTTGAAAGAAATCACCCACCATAGACAGGAAACAAGAACCCGGCTGAAAGTAAATTAAAAGAATTTTGGAAGCATAATCTGTGTGTATATAGATAATCTCAAGAACAACCTAAATTTCATTAGTTAAATGTCGAAAAAGCAGTAAAAACACATTTCTACAATATTTACTGTAAGTAAAGTGTCAAGAACAAAAAGGAAAACCAAAACTGTTTACAAGCAAAGCGAATTTTTAAATGTTGAAAAAATGAGATCCGGAAAAGTAAACGATAAATAAGCAAAAAAAAAAATGTGGTGTGCAAAGAAAAATTAAATTTTAACAAAAATAAAAATTCTTTGAAAAAGC

Publications

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