Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name MRPL30P2
Plot displaying the genomic locations of a retrocopy (in chr12) and its respective parental gene (in chr2). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr12:31477547-31478068  UCSC
Coordinates (T2T) chr12:31354071-31354592  UCSC
Coordinates (hg19) chr12:31630481-31631002  UCSC
Strand +
Parental Sequence NM_145212.4
Parental seq. overlap 449 bp
Parental seq. overlap (%) 10.1%
Genomic Region Intragenic (DENND5B)
Retrocopy Summary MRPL30P2, located on chr12:31477547-31478068, is a retrocopy of the parental gene MRPL30. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name MRPL30
Full Name mitochondrial ribosomal protein L30
Also known as L28MT|L30MT|MRP-L28|MRP-L30|MRPL28|MRPL28M|RPML28
Coordinate chr2:99181184-99199561
Strand +
Gene summary Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein. Alternative splicing results in multiple transcript variants. Pseudogenes corresponding to this gene are found on chromosomes 6p and 12p. Read-through transcription also exists between this gene and the neighboring upstream lipoyltransferase 1 (LIPT1) gene. [provided by RefSeq, Mar 2011]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes MRPL30P2
Bonobo Pan paniscus MRPL30P2
Gorilla Gorilla gorilla MRPL30P2
Orangutan Pongo abelii LOC100458972P1
Gibbon Nomascus leucogenys MRPL30P2
Green monkey Chlorocebus sabaeus MRPL30P1
Crab-eating macaque Macaca fascicularis MRPL30P1
Rhesus Macaca mulatta MRPL30P1
Baboon Papio anubis MRPL30P2
Golden snub-nosed monkey Rhinopithecus roxellana MRPL30P2
Marmoset Callithrix jacchus MRPL30P1
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>MRPL30P2
AACTACAGACTGGGACAAAAGGTGTGAAGTCTCTCGTTTACATAGATTGGATTCATCACAAATTTACCAGGTCAAGAATTCCATATAAAGCGTTTCAGCCTTCACTTGCAGATCATGAAAAATATGACGGAGATCCACAGAATCCTCAGAAACTGCATATTGTTACCAGAATAAAAAAGTACAAAAAGGTGTCCATATTGGGAAAAAGACATAATAAAGATGCTCAGATTAGAAAACACACATATCCATCAAGTTCACAAGCATATTGCTTCAGTGAATGCAAAACTGAAAGTGGTTTAACAGTCAGTAAGAATCAAGCCCCTGAAGTTGCCACAAGGATTTCCAACTGAGGAGGACATGTCTAAGCTCTGCCTCAAGAGCACTGGGGAATTAGTGCAGTGGCATCTGAAATCTGTGGAGCAGAAAGCAATTAACTCCTAATGCCCAAGGAGCTTCAGATTAAAAAATGGATTTTTTTTTTATCTAAAGATGATGAGAAAGTGTTTCACTAAAATATATTTT
>NM_145212.4
GTAGTTCTTCCTCTGCTCTGCTTCCCTTCGGAGGAAAATTTCAGGCTGAAGGTTTAGCGGGTGCCGCCTCTAAAGAGAGCAATCACTACACTTATGGCTGGGATTTTGCGCTTAGTAGTTCAATGGCCCCCAGGCAGACTACAGACTGTGACAAAAGGTGTGGAGTCTCTTATTTGTACAGATTGGATTCGTCACAAATTCACCAGATCAAGAATTCCAGAAAAAGTGTTTCAGGCCTCACCTGAAGATCATGAAAAATACGGTGGGGATCCACAGAACCCTCATAAACTGCATATTGTTACCAGAATAAAAAGTACAAGAAGACGTCCATATTGGGAAAAAGATATAATAAAGATGCTTGGATTAGAAAAAGCACATACCCCTCAAGTTCACAAGAATATCCCTTCAGTGAATGCAAAATTGAAAGTAGTTAAGCATTTGATAAGAATCAAGCCCTTGAAGTTGCCACAAGGACTTCCAGCAGAGGAGAACATGTCTAACACGTGCCTCAAAAGCACTGGGGAGTTAGTAGTGCAGTGGCATCTGAAACCTGTGGAGCAGAAAGCACATGAGTCCTAATGCCCCAGCAGCTTCCGATTGGAAAATGCAAATTGTTTTTATTTAAAGATGGTGAGAAAGTGTTTTCATTAAAATATGTTTTCAAAACCATTTTCAggccgggcacggtggctcacctgtaatcccagcactttgggaggccaaggcgggcagatcacctgaggtcaagagttcgagaccagcctgaccaacatggagaaacccccatctctactgaaaatacagaattagccaggcatggtggcacatgcctgtaacccagctactcgggaggctgaagcaggagaatcacttgaacccgggaggcagaggttgcagtgagctgagatggtgccactgtactccagcctgggtgataggatgagactccatctcaggggaaaaaaaaaaaTTTTTTTTTCACTGACTAAACCTGCTGCAGCTCTCTTTTACTACAGACTTGGAGATTTTAGTTTAATTTGGTTTAATTCTCTGTCCTTTCCCTTTCACTGTTTCACTCCAAAACATGTAAGAATGGCAATGTTTGAACATCTGCGTTTGGGTCTACTGCCACCTTAGCAAGCCTCATTAACCATTTTATAAAAATTGCGTTAGTATTGTTGTTGTTGtttttgagacagggtcttgctctgtcacccaagctggaatacagtggcatgatttcagttcactgcagcctcgacctcccaggctcaagtgatcctcccacctcagcctccagagtagctaggactacaggcagtgtgccaccacatccagctaattttttaaagttttttcatagagacagggactcactatgttgtccaagctggtctcaaactcctgggttcaagccatcctcccacctcagcctcccaaaatgctgggattacaggcatgagccactgtacccagccAAAATTGTTTTCTTTTTTAAGTGAattcaacaatttctgtgagtggctctttgcatgaacactgtgcaaggtgttggagaaatccaaagctgaccaaaacatggtccccaccttttggagcttacagtctgttctggggaacagagattcagccaaaGTCAAGAAACACTGGATGCCAGCTAGATTATCTGTTCTGTGCTTTGGTGTCTATAAGTACATATGTGGATATGGGTTCATTTTATCCCTAAACTTAGTACCAAACCAGCATTTAATATCTAATTATAAATCTAATTTGGCCTAAACTTTATTATTGCACACTGCCTGAACAAAACCTATTTGTCTCTATGTAAATTTTTTCCTCATGGAACAAGGGTGTGAAATGAAAATATTTTAGGATTTATTCAAAAACAGACTATTCTGTTTTCAGCTTCAGAATTGTTCTTTGAATCCTAAGGAACCTCTGTCAACAGTTGAGGTTGCTGTTGAAAAGAAAGAAGAAGGAGGCGGAAATCTCTCAGGGAGAATTATTTCCTTTCTTTTCTATTTTAGATACCTGGAGGGGTGGGGAGAAGTAAGAATTGTAAGGGAGGTTCAGTAGTGGGGAATTCTGTGACAGCTGATTGAAGATGATGATGAAGAACCTCTGCATTCTAGTTACCCTTTGCTTCCCTTCACCTCTTGTAAAATTTGGCTTGGCAACAATGACATTGTCATGCTTATTGTCCCAATATCCATCCTGTCGTAGATCTTAATGTTTTTGATCGTTGCGTTAAAGTGGAAGTGCCACCCACAGTGAAACCAGATCCCATTAATAAATAAGCTTAAAGGCAACTGCAGTTTTAATTCCATAGTTATTGAATATCCAGTGTGTGTAAGGCCTGGAGGGGAGCCAAAGGACACTAACTTCTAAGAGCTCCGTCTAGTTGGAGAGAAACCTGTGTGCCACAACATACAGTGTCCTTGCTTATGTGGGGTCGAAGACATCTGTGAAAATAAAAGCAGCCTCTGCTAATTTAGCGCCATCTCTTTTACTGTGCTAAtttttttttctttagagacagggtctcactctgtcgcccagcctggagggcagtggtgtgatcgtagctcactattacctccaactcttgggctcaagtgatcctcccacctcagcctcctgagcagctaggactacagatacatgccaccgctcccggctagtattttttaaaattttttgtagagccaagtgttgctatgttgtccacactgatctggagcttctaatctcaaatgattctcctgcctcagcctcccaaagtgctgggaatacaggtgtgagccaccatacctggccTTACTGTACTAATATTAATATTGTGTAAATAGGGGAAAATACCATGGTTAATTTTTACTCAAACAGTAAGAAAGTTTGAGTAACTAATTTTAATCTCAACAGCCCATAGCTAGAAGAGGGGATCTAAATGTTAAGTTGAATATTTAGAAATAAAAGTGTCTACAAGAAGAAAAGTCTTTAGTGAAAATATGGGCATAGGCCAGCAgcattagctttctattgctgcagaacaaattaccacaaacttagctgcttaaaacaacacacacttattgtctcacaatgtttgtgggtcggaagtctaggcgtggcttagctgggtagtctgtttaggatctcagtgctggaaaaacgtgtctggccaggtgctcattgtagctttgacagggaagggatctgctcccaagcactctcaggttgttggcagaatttgtttccttatggctgtaggattCATGGCAAGTTGCTTCTTCCAAAACCAGCATTGGAGACAGACTAGCAAGATGGGCACTACACTCTTAGATAATCAAATAAATGCAATCATGTGCCTCGTGtcaccttttttgcattccattcattaagaacaagttgcagttcctacctacactcaaggaagggaggaattacacagaagtgtgaccacaggaggcagggctcatggaggcctccttaaagTCCCCCAGCCAAACCTGAAAAGTCAATCCTGGACCTTATCATAGTGGCTGTATAGTTTAGAAGGTTTCTTCAGATTGGCATTCCTTTGCCTCATATCATCACTTCAAAACCCTATAAGGGTTTGTTCCTCGGTCTTGACTTTGTGTCTTTGAGGATTGCTTTGTTTAGTGTCACCTGCCTTCTTTCAGGAGGTTTTGCCTGACATCTGGTGGTGACCGTGGCCACCAAGTCAACCCAAACACTACCTTTAAGGACGACTGCAGTTCTCTTAGGGTCTCCTCAATCTAAAATTGTACCTCTTTCAGGCCAAACACCTATTTTCTTCATTTTTTTTTTCTCATAAGAATGCTAGCTAGTATGCCTATTATCTAACTGGCACAGTTTCACCAAGGACAGTTTGGAACTACACAGGCCATTTTAGGGAGATTTTGACATGAACAAGATTGCTTCTTTGGGAGGTACCTTAAAATGAAAAGCAAAGAAACTTCCATGCGGAGATTGTCTTGTTTTTCTCAAAATGGGATAATTTTGCTTAACATAAGTAGTATCCCTTCCTTCCTTTCCATACTTTGAGAATTAATAAGGACTAGCTTTTTGATCACACAGCTTGATAAAATTTTCAAGGGTCCAAATTACTGTCTAAACCATTTGCCACTCTTTGTGTATATTTGTCAAAATCTGCTTTTCTATATCAAAACTTTTCTCTCAAGACCTGAGGGAATTAATTAATAAGGAATCCTTGGAACACTGGAAATTCTAAAATAAGAGTCAGATACAAAACACTGGTCACTAAAATTCTTACCTTTATGTATTAGAATGGCAATCAATGAACAAACTGAAAATGTCTTTGGATATTATTTCTGTTTATTTTTTGCCTCAAAATTATTAAATGACATGAAATAAGTGCTCAAGAAGAAAAATAAACAATTCTTCATTTCCTGTT

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