Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name GYG1P3
Plot displaying the genomic locations of a retrocopy (in chr1) and its respective parental gene (in chr3). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr1:55222284-55224072  UCSC
Coordinates (T2T) chr1:55103121-55104909  UCSC
Coordinates (hg19) chr1:55687957-55689745  UCSC
Strand +
Parental Sequence NM_001184720.2
Parental seq. overlap 1664 bp
Parental seq. overlap (%) 27.9%
Genomic Region Intergenic
Retrocopy Summary GYG1P3, located on chr1:55222284-55224072, is a retrocopy of the parental gene GYG1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name GYG1
Full Name glycogenin 1
Also known as GSD15|GYG
Coordinate chr3:148991515-149031775
Strand +
Gene summary This gene encodes a member of the glycogenin family. Glycogenin is a glycosyltransferase that catalyzes the formation of a short glucose polymer from uridine diphosphate glucose in an autoglucosylation reaction. This reaction is followed by elongation and branching of the polymer, catalyzed by glycogen synthase and branching enzyme, to form glycogen. This gene is expressed in muscle and other tissues. Mutations in this gene result in glycogen storage disease XV. This gene has pseudogenes on chromosomes 1, 8 and 13 respectively. Alternatively spliced transcript variants encoding different isoforms have been identified.[provided by RefSeq, Sep 2010]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes GYG1P1
Bonobo Pan paniscus GYG1P1
Gorilla Gorilla gorilla GYG1P1
Orangutan Pongo abelii GYG1P1
Gibbon Nomascus leucogenys GYG1P2
Green monkey Chlorocebus sabaeus GYG1P3
Crab-eating macaque Macaca fascicularis GYG1P1
Rhesus Macaca mulatta GYG1P1
Baboon Papio anubis GYG1P1
Golden snub-nosed monkey Rhinopithecus roxellana GYG1P2
Marmoset Callithrix jacchus GYG1P2
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>GYG1P3
TGTGCCTCCTCACTGGCCACGCTCCTTCCAGGCACCAGCTTCTCTGAGCCACCAACCTGCGGCTGCCCTGGCCCACCTGCGCCTCTGGCAGCACCATGACAGATCAGGTCTTTGTGACACTGACCACAAATGATGCCTACACCAAAGGTGCCCTGGTCCTGGGCTCATCTCTGAAACAGCACAGGACCACCAGAAGACTAGTCATGCTCGCCACCCCGCAGGTCTCAGACTCCATGAGAAAAGTTTTAGAGACAGTCTTTGATGAAATCATCGTGGTAGATGTCTTGGACAGTGGTGATTCTGCTCATCTAACCTTAATGAAGAGGCCAGAGTTGGGTGTCAGGCTGACAAAGCTCCACTGCTGGTCACTTACATAGTATTCAAAATGTGTATTCATGGGTGCAGATACTCTGGTCCTAGCAAATATTGATGATCTTTTTGAGACAGAAGAATTGTCAGCAGCACCTGACCCAGGGTGGCCTGACTGCTTCAATTCTGAATTTATCAGCCTTCAGTTGAAACATATAATCAGCTGTTGCATCTTGCTTCTGAGCAAGGTAGTTTTGATGGTGGAGAACAAGGCATACGGAACACATTTTTTCGCAGCTGGGCAACAACAGATATCAGAAAACACCTGCCATTTATTTATAGCCTAAGCTGCATCTCTATATAGTCCTACCTCCCAGCATTTAAAGTGTTTGGTGCAAGTGCCAAAGTTGTGCATTTCCTGGGACAAGTCAAACCATGGAATTATACTTATGATCCCAAAACAAAAAGTGTCAAAAATGAGTCCCACCATCCCAACGTGACTCATCCAGAGTTTCTCATCCTATGGTGGAACATCTTTACCACCACCGTTTTACCTCTGCTTCAACAATTTGGCCTTGTCAAAGACACCTTCTCATACGTAAATGTGGAAAATGTCTCAGGAGCCATATCACATCTGTCCCTTGGGGGGATCCCAGCTATGGCACAGTCTGTGTATCCTCAGAAGAATGGAAGGAGCGGTGGGAACAGGGCTAGACCGATTATATGGGAGCAGATTCCTTTGACAACATCAAGAGGAAGCTTGACACTTACCTCCAGTAGAAACACTGCATTTTCCTGTGGACACATCCACTTCACAAGCCTTGTTTCTGATACTTAGTATCTAGAGCTGGGTTGAGAAAAGTCTGTTATGGTTGCTAGAGATTTTCACAAAAACTTATCAGATGAGAGGTTTTTGTAGGACAACAGGTGAGAACTGGGCAAAAGTTGTGAAGCAGCAATTCCGTTGTTACATGGACAGTGTTTTGCTTTTTAATCCTGTTTAGCTTGTTTCAGAAATTCTCACTTTTGTTGACTGCCAACATACAAAGTAGGGGAAACTCAATATTAAGCTGTTAAGATGGCTGCATCAATTCTTAAAATCTGCAGAGCCTGGTTCCAAATCAGTCACTCCCTTCAGAAGCAGACATGGCATCTGATCCTTGCTTGCTTGCTGGTTGTACCTACCTTTCACTAGACCTGCATTTTGGAATTGCCCAGTGCTGCCAGAGTGAGTGATTGTAATTCTGTTTTCAGGTAAAGATAGCTTATATTAACACTGCTGAGTGATTCATAAACGTATCAACAAATAGCATTAACCCATTTTATTTCCTGGTCTTAGTGTCTGAAGATGTTCACCAGTTTTCTATGTACAGTAAGGCAGCATGCTAAAATGCTTTTGTTCAGTCTGTATATTTGAAAATAGCAAGGTGTTCTCTGATGGTTACCTGCAGTGGAACCCTGTATGAAAAATAAAGACTTA
>NM_001184720.2
TCCCCGCCGTGCCTCCTCGCTGGCCGCGCTCCCTCCCGGTGCCGGCTTCTCTGAGTCACCAACCTGAGGCTGCCCCGGCCGCCTGCGCACCCGGCAGCACCATGACAGATCAGGCCTTTGTGACACTAACCACAAACGATGCCTACGCCAAAGGTGCCCTGGTCCTGGGATCATCTCTGAAACAGCACAGGACCACCAGGAGGCTGGTCGTGCTCGCCACCCCTCAGGTCTCAGACTCCATGAGAAAAGTTTTAGAGACAGTCTTTGATGAAGTCATCATGGTAGATGTCTTGGACAGTGGCGATTCTGCTCATCTAACCTTAATGAAGAGGCCAGAGTTGGGTGTCACGCTGACAAAGCTCCACTGCTGGTCGCTTACACAGTATTCAAAATGTGTATTCATGGATGCAGATACTCTGGTCCTAGCAAATATTGATGATCTTTTTGACAGAGAAGAATTGTCAGCAGCACCAGACCCAGGGTGGCCTGACTGCTTCAATTCCGGAGTCTTCGTTTATCAGCCTTCAGTTGAAACATACAATCAGCTGTTGCATCTTGCTTCTGAGCAAGGTAGTTTTGATGGTGGGGACCAAGGCATACTGAACACATTTTTTAGCAGCTGGGCAACAACAGATATCAGAAAACACCTGCCGTTTATTTATAACCTAAGCAGCATCTCTATATACTCCTACCTCCCGGCATTTAAAGTGTTTGGTGCAAGTGCCAAAGTTGTGCATTTCCTGGGACGAGTCAAACCATGGAATTATACTTATGATCCCAAAACAAAAAGTGTCAAAAGTGAGGCCCATGATCCCAACATGACTCATCCAGAGTTTCTCATCCTGTGGTGGAACATCTTTACCACCAACGTTTTACCTCTGCTTCAACAATTTGGCCTTGTCAAAGACACCTGCTCATATGTAAATGTGGAAGATGTCTCAGGAGCCATATCACATCTGTCCCTTGGGGAGATCCCAGCTATGGCACAGCCGTTTGTATCCTCGGAAGAACGGAAGGAACGATGGGAACAGGGCCAGGCTGATTATATGGGAGCAGATTCCTTTGACAACATCAAGAGGAAACTTGACACTTACCTCCAGTAGAAACACTGCATTTTTCTGTGAACACATCCACTTCACAAGCCTTGTTTCTGATACTTAGTATCTAGAGCTGGGTTGAGAAAAGTCTGTTACAGTTGCTAGAGGTTTTCATTAAAACTTATCAGATGAGAGGCTTTTTTAGGATAAGAGGTGAGAACTGGGCAAAAGTTGTGAAGCAGCAATTCTGTTATATGGACAGTGTTCTGCTTTTTAATCCTATTTAGCTTGTTTCAGAAATTCTCACTTTTGTTGACTGCCAACATACAAAGTAAGGGAAACTCAAGATATTAAGATGGCTGTATCAGTTCTTAAAATCTGCAGAGCCTGGTTCAAAATCAGTCACTCCCTTCAGAAGCAGACATGGCATCTGTTCCTTGCTTGCTTGTTGGTTGTGTACCTTTCACGAGACCTGAATTTTAGAATTGCCCAGTGCTGCCAGAGTGAGTGAGTGTAATTCTCCTTTCAGGTAAAGATAGGCTATCTCAACACTGCTGAGTGATTCATAAACATATCAACCAATAGCATTAACCCATTTTATTTCCTGTCCTTAGTGTCTGAAGATGCTCACCAGTTTTCTGTGTACAGTAAGGCAGCATGCTAAAATGCTTTTGTTCAGTTCTGTATATTTGAAAATAGCAGTGTGTTCTCTGATGGTTACCTGCAGTGGCACCCTGTACAAAAAATAAAAGACTTATTGCTGTATCTTGGTTGTTTAATTAAATTAAGGAATTTCACCATACACCCTTGAACAAATCTATTAGGGAATTTTTCACAATTTTTGGAATTTGTCATAGTTTTAAAAAAGTGTAAAGCTTGACATTGGGATATATGCTTTAAAAACTGGTATCTATGATTTCAATCTAATTGTTTTTCTGTGATGGTGATGGATCTGACAGATCAGAACAAACCGAGATCAAACTTACATAGTGTCATCCACACTGCACCTCTCTATTAAGTGGGTATTTAGCTATTTAGAATATTTTAACCTTAAAGTCATTCCTAACTGTCAGAATCAATActgggtccagtccctactagtattttatctatgatttaaaatgatagaatggaaaagcgtatttattaaatttatagatcattctaggttgtaagagatggcaagctaaagaagggtaggatccaagatgaccttttaaaactaaaatgagtggtcagaaaTGATTCTATGGAAGAAAACAGGACAGTTAACCATGACAGGAAGAAACTTTAGAGGTTTGATTGggcaaaagctgcaaagcttttgtgacttagccttcaaagtcacCCTCCTTATTCATATTGATGTGAATTAATATACAAGCATATAGACAGCTTAAGTCAAGAATGGTTGGGGCCACCTTGAAGGCTGTTACCATAGGAGCTCAATAAGAACCTGAGGATTTACCTAGAATTATAAAATATTAAATGATAAATGACTTCTGAAACTAGCTATTTGGACTGGTGAAGAATGAGTCGCTATTGATCTTCAAGTACAATGAAGcatttaccaaagatttatttaagtgcctccatgtgtcagatgctgtggtacaaagaAGGACTTCTCAAAATTTTAGCTAGTCAGAGGTCTTTCTGGCTTCCGAGTCCCTGGTTAAGATGAACAGAAACACAGTCTTCAGATATAAAATGTCTTATTTTTGTGGCCATTCAGTTGCATTCAACGTTAATTTTTTCTATTTACTACCGTTCATTCTCTATTTTTTACACAGTAGCATAACAAAGCTCTAAGGTGGAAAAGCTGACATAGTTTTAAAtttttttttttttttttttttttcttgaggcagagtcttgctctgtcagtcagtcaccaggctggagtgcagtggtgcagtctcggctcactgcaacctctgcctcctggattcaagagattctcctacctcagcctcctgagtagctgggactacaggcacgcaccaccacgcccagctaaattttgtatttttagtagagacaggtttcaccatgttgccaggatggtctcaatctcttgacctcgtgatccaccggccttggcctcccaaagtgctgggattacaggcgtgagccactgcacccagcAAATTTTTAAATTTCAAATAAGTAGTGAAGGCTATTATTAACTTTTGGAATCAGAAAGAATGACAAGCTTACCATAAGACATAGCATATAATGCTGTCAAGTTATTTGGCTAGAAAATCACTGAACTAAACATTCTTTTCCTTCTATGATCTATGTCTTAAGGTGAAGTATTAACTAACTTTTCCATGTAAAGCTATACAAATATTGGAAAATCTTTTCTAGGGAGTCCAGAATACTAAGGGTTACTTAGTAAAATGTATAAAAAGGCAACAGTAATTCAAATTACAAGATTTATATTTGCAGAGGTGATCCATATATACTTATCCCCTTGCAGTGGCTGGTATGACCTTTGGTTgtaagacaaacttgcccacaacagaggtcaaatccatgcctttggagattagctccatgGTGGATGGAGCTATGGTTTATGCATAAAGTAAATGTTTGTTTACCTTAATTCTCCTTATACCCATATTGTCCTGCTGTATAACACATTTTGCAGATATTTTGAAGTTAATGTGTTAAAAACTTGAGGTTAAACATTTGAGTTTTTGTTAAGAGCCAAACATCAAATGTGCCCTTATATTTTTAATGAATCTCATCCAAATGCTAATGCATAAACCTTGACAAGTAGTATAAATAAAACAAGAAAAAAATACAGCAATGTCTTTGCCATTCCCCAAAACAAAGCACACACTGCCGAAGATCATTAGTACTCACTGGTAACAAACTACATAGGGTTAGTTTGTATTTCCAATTCTAGAGCTGTAATTTTAAGGACAAAATGTACAATGATTGATTAAGAGTGCTATCTGTGTATATATAGGTATTATCACAACTCCTTTTTTTCTTCCAGATGAAGAAATTAATTGGGACCAATGTTTTTAGATCAAGGCATTTTAAATAAGCACTCTTGATTTCTGAACAAGAATTTCAACCAGCTAAATTGAGCAAAATAAAGTTAGTTAGGATATGAGGACATTATTCTGTTACAGTAATCTTCATGTACTCTCAAAAAAATGTAACACTTGCATAGAAATGTCACAATTAATGAAGGATTTTATTTGAAGATAAAGTCAAAATTATGGCACCGAGGAAGGTAATAAACATTTGAAATTTTTATTGATTTTTAAATTTAAAATCCAGTTTTAACCACAAAATTGTTTGAATCACAAGTGGTAATACAATGTCTTCAATATTTTTCTAAAGTTATTTTTCTATATAATAATAAGACAACAGCATAGCATATAGGAAGTTTTCATTCCAGTGGCTTTTTTATATATTTATCCTTCTTAGGAAGGACAAATTAAATTTTTTAAATTAAACTTTTAAAATATAACAACATCTAACAGAACTGTACAAAACAAAGAGACATTTTTTAAACAACTTGCCAAACTTACTTATGAGTGTGTTTTAAAAACAACTTTGTAAATGTCTGGGCAAAGAAGCAAGCTGTCCTCCCTTTACCTTCATAGTGAGTTTGTAAGGCTTTGTCTTTGTAAGCAGAAAGAGTAGACTGTGTTGTTTTTTGCCAAAAACTGTTTATACTTAATCTCACTGAAGTATTGCTATATGGAGAACCCATACTCTGATCAACTTGATTTTTTGTGTGTAATGCTTGATCTACCAGGTAACTTCCCAACTGCTCCTAATGCTAGCGGGCTAATCCCACATTATTATTCCACTATCATCCCTGCAGAAAGGTCTTGGTTTTGATGAAAATCAGCCCTTTCCTTACCTGCTACTGCCTCAAAAAGGGACCAGGAAGATTCTAGCTGGCTAATTCACTGTTCCCTTTGAGCAAGAAAACGGCACAGGGAGAAAAGGACTTATCTGGTGAGAGATTTGGCATATACCTTCAATGTGTGCCCTATAACACAACATTGTCTCCGATCTCATCTTTCTATCAAATGACTTCCAACACTCTTAAGTCTCAGGTATTCTTAAATCTGTATCATCAAACATGAAGCTTCTCTTGTTTGTTAGAGTAATTAATCTTTCTTTGGATTAAAGTTTCCCTTTGAAATAAAACCACCTACCTAATCTGACTGCTAAATTTCTAGCTTCTTTGTTTTAAATATGCTCAGGAGTCAACCCAAATTCTGCAGCAAATAAGTTTGCTTATTaacaaaaaagtaaaaaaaaaagaaaagaaaaaaGATGACTAATTCTACAGATAGCTGTAAGGATGAATTACTCAAGTTCAAAATCAAATTCTGATTCTAAACACATAACAATTGTTTACATTCAGGATtaagatgtctttaagagttgaaacgactttggagatcatccagcccaacttccATCCAGATATCACGCCTCTCACATATAGTAGTCTTCTGAATTATAAAAATTTATAAAGTTACTTCCAAAAAAAGCTACATAAATAAAAATTATCTATTTATAGAAATATCTATTTAGCAGTTCCATAATTTAAAATATTCAAATCAAATTGGGTAGGACTGGTTTGCCTCTCACTCCCACAGACTATATTTATACCTCAGACACAGCAAGTTACATTTAAACAATGAGTGTAGTACTACTTAACTAAAATGGAAAAAATAGTACTCTTAACATAATCCCTAATTTTTTCATGAACATAAAACTCCAAGTCATTTATGTGAACTATATCTCAATGTAGCTGTAGGAAAAATAAAAACCTGTGCTAACCTGGACTTTGGTCTCATTTAAGATTTGGTTCTGGAATGCAAATATGGTTTTTGAAAGCCCAATAAAATTAATTCTTGTATA

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