| Retrocopy Name | MCTS2P |
|
| Species | Homo sapiens | |
| Coordinates (hg38) | chr20:31547472-31548163 UCSC | |
| Coordinates (T2T) | chr20:33271696-33272387 UCSC | |
| Coordinates (hg19) | chr20:30135275-30135966 UCSC | |
| Strand | + | |
| Parental Sequence | NM_014060.3 | |
| Parental seq. overlap | 606 bp | |
| Parental seq. overlap (%) | 6.3% | |
| Genomic Region |
Intragenic (HM13) |
|
| Retrocopy Summary | MCTS2P, located on chr20:31547472-31548163, is a retrocopy of the parental gene MCTS1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
| Gene Name | MCTS1 |
| Full Name | MCTS1 re-initiation and release factor |
| Also known as | MCT-1|MCT1 |
| Coordinate | chrX:120604101-120621159 |
| Strand | + |
| Gene summary | Predicted to enable translation initiation factor activity. Involved in IRES-dependent viral translational initiation; formation of translation preinitiation complex; and ribosome disassembly. Located in cytosol and plasma membrane. Colocalizes with cytosolic small ribosomal subunit. [provided by Alliance of Genome Resources, Apr 2022] |
| Species | Scientific Name | Retrocopy | |
 |
Chimpanzee | Pan troglodytes | MCTS1P1 |
 |
Bonobo | Pan paniscus | MCTS1P1 |
 |
Gorilla | Gorilla gorilla | MCTS1P1 |
 |
Orangutan | Pongo abelii | MCTS1P1 |
 |
Gibbon | Nomascus leucogenys | MCTS1P1 |
 |
Green monkey | Chlorocebus sabaeus | MCTS1P1 |
 |
Crab-eating macaque | Macaca fascicularis | MCTS1P1 |
 |
Rhesus | Macaca mulatta | MCTS1P1 |
 |
Baboon | Papio anubis | MCTS1P1 |
 |
Golden snub-nosed monkey | Rhinopithecus roxellana | MCTS1P1 |
 |
Marmoset | Callithrix jacchus | MCTS1P2 |
 |
Mouse lemur | Microcebus murinus | MCTS1P3 |
 |
Mouse | Mus musculus | Mcts1P1 |
 |
Rat | Rattus norvegicus | Mcts1P1 |
 |
Chinese hamster | Cricetulus griseus | Mcts1_1P1 |
 |
Rabbit | Oryctolagus cuniculus | MCTS1P1 |
 |
Pig | Sus scrofa | Without Homology |
 |
Cow | Bos taurus | Without Homology |
 |
Sheep | Ovis aries | Without Homology |
 |
Dolphin | Tursiops truncatus | Without Homology |
 |
Horse | Equus caballus | Without Homology |
 |
Dog | Canis familiaris | Without Homology |
 |
Panda | Ailuropoda melanoleuca | Without Homology |
 |
Cat | Felis catus | Without Homology |
 |
Pale spear-nosed bat | Phyllostomus discolor | Without Homology |
 |
Velvety free-tailed bat | Molossus molossus | Without Homology |
 |
Greater mouse-eared bat | Myotis myotis | Without Homology |
 |
Kuhl's pipistrelle | Pipistrellus kuhlii | Without Homology |
 |
Greater horseshoe bat | Rhinolophus ferrumequinum | Without Homology |
 |
Egyptian rousette | Rousettus aegyptiacus | Without Homology |
 |
Sloth | Choloepus didactylus | Without Homology |
 |
Tasmanian Devil | Sarcophilus harrisii | Without Homology |
 |
Opossum | Monodelphis domestica | Without Homology |
 |
Platypus | Ornithorhynchus anatinus | Without Homology |
 |
Chicken | Gallus gallus | Without Homology |
 |
Turkey | Meleagris gallopavo | Without Homology |
 |
Zebra Finch | Taeniopygia guttata | Without Homology |
 |
Budgerigar | Melopsittacus undulatus | Without Homology |
 |
Painted Turtle | Chrysemys picta | Without Homology |
 |
Lizard | Anolis Carolinensis | Without Homology |
 |
Frog | Xenopus tropicalis | Without Homology |
 |
Zebrafish | Danio rerio | Without Homology |
 |
Drosophila | Drosophila melanogaster | Without Homology |
| >MCTS2P |
| TTTCCCTGTTGTCGCCCGCTTCACCCTGGATCATGTTCAAGAAGTTTGATGAAAAGGAAAGTGTGTCCAACTGCATCCAGTTGAAAACGTCAGTTATTAAGGGCATTAAGAGCCAACTGGTAGAGCAATTTCCAGGTATTGAACCATGGCTTAATCAAATCATGCCTAAGAAAGATCCTGTCAAAATAGTCCGATGCCACGAACATACAGAAATCCTTACCGTAAGTGGGGAATTATTGTTTTTTAGACAAAGAAAGGGGCCTTTTTGTCCAACTCTAAGGTTGCTTCACAAATACCCTTTTATCCTGCCACACCAGCAGGTTGATAAAGGAGCTATCAAATTTGTACTCAGTGGCGCAAATATTATGTGTCCAGGTTTAACTTCTCCTGGAGCTAAGCTGTACCCTGCTGCAGTAGATACGATTGTAGCAGTCACAGCGGAAGGAAAACAGCATGCTCTGTGTGTTGGGGTCATGAAGATGTCTGCAGAAGATATTGAGAAAGTCAACAAAGGAATTGGCATTGAAAATATCCATTATTTAAATGATGGGCTGTGGCACATGAAGACATATAAATGAGCCTCAGAAGGAATGCATTTGGGGGGCTAAATGTGGATATTGATgACAGCGTGAATACAATGCCTCTGTGGTTATGCTAAATAA |
| >NM_014060.3 |
| GTTTTCCGGATAACGACTACAGCTCCGACTGTCAGTGCCGGCCTTCCTCGTGTGAGGGGATCTGCCGGACCCCTGCAAATTCAATTTCTTTCCCATTCCGGGCCCTTCCCTATCGTCGCCCCCTTCACCTTGGATCATGTTCAAGAAATTTGATGAAAAAGAAAATGTGTCCAACTGCATCCAGTTGAAAACTTCAGTTATTAAGGGTATTAAGAATCAATTGATAGAGCAATTTCCAGGTATTGAACCATGGCTTAATCAAATCATGCCTAAGAAAGATCCTGTCAAAATAGTCCGATGCCATGAACATATAGAAATCCTTACAGTAAATGGAGAATTACTCTTTTTTAGACAAAGAGAAGGGCCTTTTTATCCAACCCTAAGATTACTTCACAAATATCCTTTTATCCTGCCACACCAGCAGGTTGATAAAGGAGCCATCAAATTTGTACTCAGTGGAGCAAATATCATGTGTCCAGGCTTAACTTCTCCTGGAGCTAAGCTTTACCCTGCTGCAGTAGATACCATTGTTGCTATCATGGCAGAAGGAAAACAGCATGCTCTATGTGTTGGAGTCATGAAGATGTCTGCAGAAGACATTGAGAAAGTCAACAAAGGAATTGGCATTGAAAATATCCATTATTTAAATGATGGGCTGTGGCATATGAAGACATATAAATGAGCCTCAGAAGGAATGCACTTGGGCTAAATATGGATATtgtgctgtatctgtgtttgtgtctgtgtgtgACAGCATGAAGATAATGCCTGTGGTTATGCTGAATAAATTCACCAGATGCTAAAATTCTGTTAGCTTCAGAAATTATTTTAAGTTTTCTTAAACTCAAGTTAAAATTGGGTAGCAAACTTGGACATTAAAAGGTATCTGGTAAGTAAGCAAACTCATACAACTAATGTCCTTTCTTAGGCTAATGATATAAGAGTGAAGAGCAGGACTTGGTCAATGGATTGCCATTTTATGGTAGACCTCTAGAGAAACTGTCTAGTTAAATGGGGCTAGAAACTAGACTAGGAATTTTATTCTATTACTCCAGGGGACCCAGCAGTGCTCATTCTCgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtTTTGTTGATTGTTtttttaaaaaaaacttcaatggaaaattctaaacatattaagaagtctggagaatagtataatggacctctccatatccatcacccagtttcagtttatggtcagtcttatttcatctatacctcaattatttctccccaccccccaattattttgaagcaaatcccagacatcctatcatttcatccataactactttattcttttttttttttttttgaaacagggtcttgctctgttgcccaggctggagtgcagtggtacgatcttggctcactgtaacctccacctcccgggttcaagcgattcttgtgcctcagcctcctgagtagctgggattacaggcacgtgccaccatgcccggctaattttgtatttttggtagagatggggtttcgctatgttggccagactggtcttgaactcttggcctcaagtgatccgtccccctctgcctcccaaagtgctgggattacaggcatgagccaccgtgcccagctaatttttatatattttatagttggccaggctggtcttgaactcctggcctcaagtgatcagcctcccaaagtgctgggattataggcatgagtcaccatgcctggcgtcataactactttagtgtgtatctttaaaaattagaaaaaccccacaataccattatcacacctaaaaagttgaactgtttcttaatatgatcaactgtctagactgttaattctctttaactgttggtttgcttgaaataggtaccacacaaggttcatacattgcatttggttgttatttattgaagtctgtttaatttataagttaccttttcttttcccccttaaattatttaagaaatctagttgttttgtctttaaagtttccacacatattctggattttgttgattgtatcactgtgaagtcattaacttgtttttatgcctcctgtatatcctgtaaacaaataagattgatcagattcaggttcagtttttttagTGCCTTCTTTTGAGTAAAGTCATACCAAACAGATGCCCAGAACATCTGGATTTGGGTCCCCACTAGACTCCTTAAATAATGTATATCTTCTATAAGTGGAATATGAGGGACATGGACCTGCTTTAGTAAGAACAGTAATCTGTTTGGGGAGTTAAAAGAGCAGTTGTGGATTTATTTATTGATAAAGACCATTTTTCTTCCTAATAACCTTGCTGTTATTCTAGTGTCTTAGCCATCTTCATTTGGTTGTTTACCAATATATGACATGTGATTTTATTTTTCAGATGGATACAGACATATACAAGATTGTGGTGACCTGTGTTACAGTTAGAAGTTGGTGAGAAAGGTGAGGGTGGATAGCAAAAAGAGAGAGATCATTTggctggctgttccagctgggtctcccaggatgtaacataggtggacatagatccagggtctgaccctcagcttgagaaaccatttCCCACTGATGAAACTTGAGAGACTTGGAGATTCCCCAGTTAGAATATAAATGTATTAATTCATAGTGATAGGTCTGCCTATGGTAAACAATTAGGAAACAGGAAGTTACTTGGTAAACACAGGTATGAGCAAAGGAAGATTGATAAATTGGGGTAATATTTCAGTTGTGCTGAGGTAAGACTTGGAGAATTTTTCCTGCTTCATCATTAATTAGAATGCTTATCTCTGCCAAAATCTCATCTCTTTCCTAGCCCATAGAGGTGCCCTGATATTTTATTTCCTATATCCTTTTCAAGTTCCATGTAGTTTTCCTTATGTTATGACAGTTTTATTCTGCAGCTTACCATATTATTTATTCCTGGTCCACGAAAGTATAAATAGTCTCATCAGGAACTCATTTGTAAGTCATCTCCCAGGGGGGTTTCTTCAACAGATAGTTTAATTTTTTGCTGACTTACTGGCTTCAAATTCAGATGTCTCCCTATTTGGGGGAGGAGGCACCCTATTTGAGGCCTGTAGCTCCTTATGTTCTTAAAAAGAATATACAAGTCATTTATGTCAGAATCAAACTTTGAACCTTTATTTTTGTTGCTAAGAGAATGTTTTTTGACCAAGACTGCCTATGGAGTATTAGCAATGAAAAACAAAGCACACATATACATACATTAGAGAAGTAAAAACTTTTAATAGCTTGGTTTTTGAAATAATTCATCTTTGTGTCTAACCACTGTTACAGTGGGTGTAAGGAACACTTTTTAAATATTCAACATCAACATCTGTGCTTGTTTTTCTACTGTGCTGAGGTACACTGTGTTGCCTTGGTGATATGGACTAAATATGTATGTTCTCTGCTTCCCCTGGGTCTGAGGCCTCTGCTCATCACTGTTAATCAGGGATGTCACTCTACATGTGTGATCCTTGTCATTTTCTAAACATTAGGTCATACATGAAAGGCAATTCAAAGAGATTAAACTAGCAGATGTGTCAGCATCTTTAGATACTGTGCTTAATGGAAACTTAGTTTACCTATATTCGTGAGAATAGGAATACAGGGATAGAGAGCCTGCTTCTCTCAGGCAGTGTGTCTTTAGTTCATTTTTAGTTTCAAAATTAAGTTTGTGTCAAACCAACCTACAATCTAGTAACTTGTGTATTGGACTCACTTTTACTCAGACAAGGTCAGttcagctcaataggtatttattgagtatctactaggttctaagtgacgtggcatgaagatgaataatacagaagtagcccttgctcttaaggagcttccaatctagtgAGTAAAGAAAATTTACATTTTAAATAATCTGGGTAATGGTGACAGCCCAATACTAATATGTAAAGCCAGTAGGAATGTACTAATCCTTTTCCAATTTTAGTCATCAAAAATTGTAAATTACAAATGAACTAAATGTAGTAATATTCCATAGATTGTATCCAATGTGAGGGTAAAAAAAAAATCCCAGATGTCTTGGAGTTGCCGTGATTCAGCATCCCAACTCAGATGATTGTCCTGTTGTCCGGTGACATAATGGCCTGATCAGTTCTCTTCTAGCAGACTGTCTGTTATGGTGGTTTGGTAGTGGTCTGTTGGGAAGCTGCATTTTTCCTTTTCTGTTTTTATGCTCTGGACCCCAAACAAAAACAGCTGGATTTATCCCATGGGTAGTCATGAACATTTCCAATTTGAGGGATTTTATATTCCCCAAACAGAAGGTTATATGGCATATATCAAATAATAATGATATCCAGCCAGGTTCCCTGTCGTACCCAAATCAGTAACTGAAGATACGTATTTCTAAGTATAATACTTCAGAGGAAGAGATAAGAATTACAATTCACTAAATTCGTGGAGGTGTTTCATTATAATAAATATGTCACTTATTAATAATGTAGCAATTATATATTAATGGAAATATGAATGTATGCCCAAGCAAAATGTCATAAATATTTTAACTTTGTTTGTCTAGGTTCCTTAATTTTGAGACTATAATTATCAAGGCTCTTCAAGAAACTCAAAATGATTCTAATTTCTAAGTAGTATGCATTAAAACTGATATATAATGAAAGAAAAACAGTGAAAATGTATGCATCAGTTTCTAAAGAAATCATACTTGTCATTGTAGAGATGCATGTAAATTAAATGTATTATACATTTTTATACTTGTATGTATTTTATACTTTGTATGAATACTTTTATTACACTTTTTAAGGCAGGTAAAAGAATGAGTAGATGTTATCAACTATAACAACAATTTGTTGAATACTGTGTTAAAACCAAGTAAAGGACCACAACTCCACGAGATCAGGAATGAATGAAGAAAATTGAGGGCCAGTTTTTAAATCATTGTTGAGACTATTAGGTTCATCTGTCTGTTTAAGAGTCTGGCCTTAGGGAATATAATTtatgcatgtaaaaaaatacaggagatgattcactggaatgtctcttaataataccatgttcattaagaataggtcattgggaGGAAAAATAAATAAAAACATCTGAACTCATTAGTATAATTAATACTTGCCTCTTAGAATGAAAATTAAAGAACTCCAAATTTTAGCCTTGAATACTTTGAGAAATAAAAGATGAATTAGTGAAATAATTTCTACTTAAAATCTTAGTTGTTACAGAGAATGACATGCCTCACTATTAATGTCCAATTCTAATTAATGGATTGTTTTAGAAATGTATTTGTGAAATATAGCAAACATAGCTAGTAATACTAACAGGTGAAAACTGATATTTCAAATGACTAAATAGACTTAAGATTAGAGGAAGGTAGGAAAAGGTGTGCAACTAACAGAAGCAGTTAACCAAAAAATGAGCTTCAGGCATCAGTCTTATTTGGAAGACTGTAAATCAACAGGCTAACGTTCAAAATATGGCAGACATCTTAATATCAATATATGCTAAATTGGTTTATCTTTAGGCAGAAACAGAAAGCAAAAAATTAAACTCATCCAACTCATACATttgttgttgttgttgttgttgttgtttttgagatggagtcttgcttcattgcccaggctggagtgcaatggcacgatctcggctcactgcaacctctgtcttccgggttcaagcgattctcctgcctcagcctcccgagtagctgggatcccatgcgtgtgccaccacacctagctaatttttgtatttttagtagagacagggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatgcacccgccttggcctcccaaagtgctgggattacaggtgtgaaccaccacacccgaccCAACTAATACATTTTTAAAATCCCATTTTAAAAGTAAAACCACAGTTTTCATATAACAAATGTTATTGCTCTTCATTTCATTCTCCAATTTTAAAATGCTTTACTTTCAGCCAATATGTGAATATAGGAGACTTCAAAAGCATAATCAATTACTCCCTTAAAGTTCATTGTAAGTGTTCTCAGAACTCTACCACCTAGAATTTAAAGACGGGAAGATTTACTTTATAATTTTAATTTCTTATCACAAGACTCGATTGTCAATAACTGTTAACGTCCATTTAATAATCTATGGTGAAATAGGTAATTTCTTCTTATTTTCACAAGCGTGTGAGTAAAAGACTGGGTTTTAAGCAATAAATCATTTGTTCTAACTAAGCACATGCTTGGAAAAAGTGCTATTTTTCCAAACGTATGCCTTGAAAACAAATACAATTCAATTGCCTTTTTGGTTCATGGGAAGCCATACTGCGGTGGCTTCCAAGGTTGGCCAACCTGTTTTTATTCTTACCACCTCTTTCAAAAAGGGATGTTGTCTTTGTCCCCAAATTCTGGTGTTGTCCTATGCTGATGCATAATGAAGCCCTGAGGCTTGGAAACTTGCAAACCAATAAGATGATTTAATGATGAAACGGCATGTCAGTTTGACACTGTCTATTAATAGTCCTTGAGTGAGCTTAAATTTGAGACACTTTTAAAAGCGGCATGTAGTTCCAGTTTTGCTTCCCTTATCAGTGGAGCTTGAGATGTCTGTTCCTGCCGACTGATGTTTTAACAAATTTTTAGTTTCTCATGATGTGAAAGATTTTGTATGCACGTCTTAGTCTGGATACTGTTTTCATTAGTTCTAATGCTGCTGCATGCAAATTTTGTTTAAAACCAAAATTGACTCTTCACATCTGGACTAGATTGGACATGGTGAGGAGGCTGGAAGGAAAGTCCTTTTTGCTCTGTAGGCTCTGGACAGCTTTCTTAGAGTTGACTTATCCAGGATTAAGAAAAAGTTTTCTTTTGCGTGACTAAATTCTTTCCACAGTTTGCTTGTGTAAGCATTTTAGATTTAAGCAAGTTCAACTTGAAATATATTTGAATATGAAGTAGAAACAGCTTCATTTAATGGGATAATAGCAATCTCTAACCCATCAAATTAATATCTACTAAATAGCTTCCAAAAAGCACTGACTGGAAAATATTTTTCACTATCATGGCTTTATTCAGTTTCAAAAACAGTAGGGGCTAAAATGTTTGGACATTTATCCTGCATTTATTTTGTGTTTCACAAGGTTAAAATTTTGTATTTTGTAAAGTGTCTGAAAAGGAGTCCACAAAGTATTTCTGCTTTCTTGCTCCTGAATGCAAAGGTCTGAGAGAAGGCACATCCTCATTAGCTTCTGGGTGTTGTCAAACCCAATCCTCTCTCAAGTACCAAATGCCCAGATACATTTATTGGGATGCAGGAATCTCACTTAAGTAGCGGTTTTTGCTGATATAAAGACAAACATCTTGATTAAAGTGTAGGGAGATAGAAACTATACCAATTTGGGCAATTTTGGCTCTAATGTCTAATTTGTTGTGAAAGGGGAAGATGTTCTAAGCTAATGTTCTTAAAAGTAACTTATGAATTTCTTAAAAATAGTTTTTAAAAAGCTGTTTCAGGAAAAGCTGTTTTATTGCATGGCACAGATTAAATGTACAGATGTTATCTTAAAACAATGAAAGAGTTCCCCTAATTTGAATATTCAATACCAGCTGTTATTCACATCAATATTTTAACATTTTACCATCAAGATATTTAATACAAAGGATTGATACATATTTAACTGTTTAGAATTCTAGTTAAACTTGTCCAGATGAGTAAGAGGGAAGGAGaaataacattctccaagtacctaccatgtgcacaagctctacttatatatcttgcttaatcttagcaatgattccatgaggtagattttaactctcattttacaaacgaggagactaaggctcagagaggtcatacaacttcaggaaagttgtatgacctctctgaggtaataaatggcagaactggaatttgaacctaagtctccttgtctgcaaatcctgtgttttGCAGAAAACTCTCCTCTTGTATTTCATAAAATGTTAAATCTTGGCCCAAATTCAAATCACCATCTTTATGGGTTATTGGAGAGAGGTATAAGTTGGCAAGACTCTGTTCCACGATGGGAAAAAATGGGTAGGATTTGAATGAGTAAGAGTGGGATACTTGCACAGTATCATATTTGTGTGGCTGGAGTAATGTTTTTCTGTTTCCCTCTTAGCAAAGTGGAGTGGGAGAATCTTGAAATTGAACTCAGTCCTGAGGTCTGATTTTCCTATTATTAGTCACTTTCAAGCCAGGTGATTTGTGACCATTTAAATGTTATGCTATTTCAAAGTCTTCTACATCTTTAGAAAAGGACATGAGGGAGGGTTAGTTAAGTGGGGCAATGAGAATGTAGAGTGTAATGTGCAAAAGCAGGACTAGCAGTTGCTTTGAAGATATCTGGGGAAggccgggcacggtggttcacgcctgtaatcccagtactttgggaggccaaggtgggcggatcacgaggtcaggagatcgagaccatcctggctaacgtgaaaccccgtctatactaaaaatacaaaaaattaaccggacgcagtggtgggcgcctgtagtcccagctactcgggaggctgaggcaggagagtggcatgaacccgggaggcggagcttgcagtgagctgagatcgcaccactgcattccagcctggacaacagagcgaaactccgtctcaaaaaccaaccaaacaaaaaacaaaaaTTAgctgggcatggtggcgcgtgcctgtaatcccagcactttgggagccaaggtgggtggatcatgaggtcagaagattgagaccaccctggccaacatggtgaaatcctgtctctactaaaaatacaaaaaaaaaaaaaaaaaaaaaaattagccgggcgtggtggcgcgtgcctgtaatcccagctacacaggaggctgaggcaggagatttgcttgaacctgggaggcggaggttgcagtgagccgagattgtgccactgcactccagcctgggcgacagagcaagactccgtctaaaaaaaaaaaaaaGATATTAAAATTAATGACAGGAAGAGTTTGGGTTCAGTTATAATTTAAGGGAAAAAACATTGAGGGGCCTAATCTACATTTTGCTCCGGATCCAATGATTTAATTTTTGGGAAGAAAAATCCAGTGATTAAAGTCATGCAAGGAGATGGCCTGGGGCTTGCTAAAAGTCAGGTTGCAGTTTCCATTGCATTCAAGAAAATCAGAAAAATAAATACAACTTTTAGAAGAAACTAAGTTTTCTCCCATTCATGTTTAGCTATTGGGGGGTCTCATACTTCTGGACTTGCTTAGACctatgctatctaatatggtagcctctgcccatccatatgtggccactgagaacttgaaatgtgactagtttgaattaagatgtgctgtaactaaaatacaccctggatttcaaagacttaataaataatgtaaattatctattctttcctgttgattatatattgaaatgataatattttggatatgtttgggttaaataaaatatattactaaaagtaa 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