Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name SYNCRIPP1
Plot displaying the genomic locations of a retrocopy (in chr20) and its respective parental gene (in chr6). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr20:6213536-6215689  UCSC
Coordinates (T2T) chr20:6254763-6256916  UCSC
Coordinates (hg19) chr20:6194183-6196336  UCSC
Strand +
Parental Sequence XM_005248635.4
Parental seq. overlap 1946 bp
Parental seq. overlap (%) 30.4%
Genomic Region Intergenic
Retrocopy Summary SYNCRIPP1, located on chr20:6213536-6215689, is a retrocopy of the parental gene SYNCRIP. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SYNCRIP
Full Name synaptotagmin binding cytoplasmic RNA interacting protein
Also known as GRY-RBP|GRYRBP|HNRNPQ|HNRPQ1|NSAP1|PP68|hnRNP-Q
Coordinate chr6:85607784-85643862
Strand -
Gene summary This gene encodes a member of the cellular heterogeneous nuclear ribonucleoprotein (hnRNP) family. hnRNPs are RNA binding proteins that complex with heterogeneous nuclear RNA (hnRNA) and regulate alternative splicing, polyadenylation, and other aspects of mRNA metabolism and transport. The encoded protein plays a role in multiple aspects of mRNA maturation and is associated with several multiprotein complexes including the apoB RNA editing-complex and survival of motor neurons (SMN) complex. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene, and a pseudogene of this gene is located on the short arm of chromosome 20. [provided by RefSeq, Dec 2011]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes SYNCRIPP1
Bonobo Pan paniscus SYNCRIPP1
Gorilla Gorilla gorilla SYNCRIPP1
Orangutan Pongo abelii SYNCRIPP1
Gibbon Nomascus leucogenys SYNCRIPP1
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SYNCRIPP1
GGAACTGGATAGGGTTTGCTGTCAGCGGCGTGAGCTTCGGCCGCCATTTTACAACAGCTCCACTCGCGCCAGACACAGGGAGCAGCGAGCACGCCTTTCTTGCAACCTGGTACCATCGGACAGGATTCCTCCCCCTCAGTCCAACGGGGAGATCTTTGGAAACATGGCTACAGAACATGTTAATGGAAATGATACTGAAGAGCCCATGGATACTACTTCTGCAGTTATCCATTCAGAAAATTTTCAGACATTGCTTGATGCTGGTTTATCACAGAAAGTTGCTGAAAAACTAGATGAAATTTACGTTGCAGGGCTAGTTGCACATAGTCATTTAGATGAAAGAGCTATTGAAGCTTTAAAAGAATTCAATGAAGACGGTGCATTGGCAGTTCTTCAACAGTTAAAGACAGTGATCTCTCTCGTGTTCAGAACAAAAGTGCCTTTTTATGTGGAGTCATGAAACCTTATAGGCAGAGAGAAAAACAAGGGACCAAAGTAGCAGATTCTAGTAAAGGACCAGATGAGGCAAAAATTAAGGCACTCTTGGAAAGAGCAGGCTACACACTTGATGTGACCACTGGACAGAGGAAATATGGAGGACCACCTCCAGATTCCGTTTATTCAGGTCAGCAGCCTTCTGTTGGCACTGAGATATTTGTGGGAAAGATCCCAAGAGATCTATTTGAGGATGAACTTGTTCCATTATTTGAGAAAGCTGGTCCTATATGGGATCTTCGTCTAATGATGGATCCACTCACTGGTCTCAATAGAGGTTATGTGTTTGTCACTTTTTGTACAAAAGCAGCTCGGGAGGCTGTTAAAACTGTATAATAATCATGAAATTCGTTCTGGAAAACACATTGGTGTCTGCATCTCAGTTGCCAACAATAGGCTTTTTGTGGGCTCTATTCCTAAGAGTTAAAACCAAGGAACAGATTCTTGAAGAATTTAGCAAAAGTAACAGAGGGTCTTACAGACGTCATTTTAAAGTCAAGGTCTGGGGGAATGTTGGAACTGTTGAATGGGCTGATCCTATGGAAGATCCTGATCCTGAGGTTATGGCAAAGGTAAAAGTGCTGTTTGTACGCAACCTTGCCAATACTGTAACGGAAGAGATTTTAGAAAAGGCATTTAGTCAGTTTGGGAAACTGGAATGAGTGAAGAAGTTAAAAGATTATCCATTCATTCATTTTGGTGAGTGAGATGGTGCTGTCAAGGCTATGGAAGAAATGAATGGTAAAGACTTGGAGGGAGAAAATATTGAAATTGTTTTTGCCAAGCCACCAAATCAGAAAAGGAAAGAAAAAAGCTCAGAGGCAAGCAGCAAAAAATCAAATGTATGACGATTACTACTATTATGGTCCACCTTATATGCCCCCTCCAACAAGAGATGGAGGGCGAGGAGGTAGAGGTGGTTATGGATATCCTCCACCATAACTATCGTGGTGGATATGAAGATCCATACTATGGTTATGAAGATTTTCAAGTTGGAGCTAGAGAAGGGGTGGTAGAGGAGCAAGGGGTGCTGCTCCATCCAGAGGTCGTGGGGCTGCTCTTCCCCGTGGTAGAGCCGGTTATTCACAGAGAGGAGGACCTGGATCAGCAAGAGGCGTTCGAGGTGCGAGAGGAGGTGCCCAACAACAAAGAGGCCGCGGGCAGGGAAAAGGGGTCGAGGCTGGTCCTGACCTGTTACAATGAAGACTGACTTGGTATGTGGGATTACACCAGAAGCTTGCAATGGAGTAATGGTAAGGAAATCAAGCAACCTTAAATATCTCGGCTGTATAGGAGCATATTCTATTGCAGAAGACCTTCCTGTGAAGATCATGGAATCAAATACGGGACATTAAACTAATACTTGGACTTTGATATGAATTTCTTTAACAATTTTCTCTGCAGTGCAAGTTATTAAACTAAAGCTACTCTATTTTCAAAATGTGTTCCAACAGAAATCCTTCATAACTCCTAGCATGGTATCTTAATAAAGAATAAAGTTCTTT
>XM_005248635.4
GAACTGGATCGGGTTTGCTGCCAGCGGCGTGAGCTTCGGCCGCCATTTTACAACAGCTCCACTCGCGCCGGACACAGGGAGCAGCGAGCACGCGTTTCCCGCAACCCGATACCATCGGACAGGATTTCTCCGCCTCAGCCCAACGGGGAGATCTCTGGAAACATGGCTACAGAACATGTTAATGGAAATGGTACTGAAGAGCCCATGGATACTACTTCTGCAGTTATCCATTCAGAAAATTTTCAGACATTGCTTGATGCTGGTTTACCACAGAAAGTTGCTGAAAAACTAGATGAAATTTACGTTGCAGGGCTAGTTGCACATAGTGATTTAGATGAAAGAGCTATTGAAGCTTTAAAAGAATTCAATGAAGACGGTGCATTGGCAGTTCTTCAACAGTTTAAAGACAGTGATCTCTCTCatgttcagAACAAAAGTGCCTTTTTATGTGGAGTCATGAAGACTTACAGGCAGAGAGAAAAACAAGGGACCAAAGTAGCAGATTCTAGTAAAGGACCAGATGAGGCAAAAATTAAGGCACTCTTGGAAAGAACAGGCTACACACTTGATGTGACCACTGGACAGAGGAAGTATGGAGGACCACCTCCAGATTCCGTTTATTCAGGTCAGCAGCCTTCTGTTGGCACTGAGATATTTGTGGGAAAGATCCCAAGAGATCTATTTGAGGATGAACTTGTTCCATTATTTGAGAAAGCTGGACCTATATGGGATCTTCGTCTAATGATGGATCCACTCACTGGTCTCAATAGAGGTTATGCGTTTGTCACTTTTTGTACAAAAGAAGCAGCTCAGGAGGCTGTTAAACTGTATAATAATCATGAAATTCGTTCTGGAAAACATATTGGTGTCTGCATCTCAGTTGCCAACAATAGGCTTTTTGTGGGCTCTATTCCTAAGAGTAAAACCAAGGAACAGATTCTTGAAGAATTTAGCAAAGTAACAGAGGGTCTTACAGACGTCATTTTATACCACCAACCGGATGACAAGAAAAAAAACAGAGGCTTTTGCTTTCTTGAATATGAAGATCACAAAACAGCTGCCCAGGCAAGGCGTAGGTTAATGAGTGGTAAAGTCAAGGTCTGGGGGAATGTTGGAACTGTTGAATGGGCTGATCCTATAGAAGATCCTGATCCTGAGGTTATGGCAAAGGTAAAAGTGCTGTTTGTACGCAACCTTGCCAATACTGTAACAGAAGAGATTTTAGAAAAGGCATTTAGTCAGTTTGGGAAACTGGAACGAGTGAAGAAGTTAAAAGATTATGCGTTCATTCATTTTGATGAGCGAGATGGTGCTGTCAAGGCTATGGAAGAAATGAATGGCAAAGACTTGGAGGGAGAAAATATTGAAATTGTTTTTGCCAAGCCACCAGATCAGAAAAGGAAAGAAAGAAAAGCTCAGAGGCAAGCAGCAAAAAATCAAATGTATGACGATTACTACTATTATGGTCCACCTCATATGCCCCCTCCAACAAGAGGTCGAGGGCGTGGAGGTAGAGGTGGTTATGGATATCCTCCAGattattatggatatgaagattattatgattattatggttatgattaCCATAACTATCGTGGTGGATATGAAGATCCATACTATGGTTATGAAGATTTTCAAGTTGGAGCTAGAGGAAGGGGTGGTAGAGGAGCAAGGGGTGCTGCTCCATCCAGAGGTCGTGGGGCTGCTCCTCCCCGCGGTAGAGCCGGTTATTCACAGAGAGGAGGTCCTGGATCAGCAAGAGGCGTTCGAGGTGCGAGAGGAGGTGCCCAACAACAAAGAGGCCGCGGGGGAAAAGGGGTCGAGGCCGGTCCTGACCTGTTACAATGAAGACTGACTTGCTATGTGGGATTACACCAGAAGCTTGCAGTGGAGTAATGGTAAGGAAATCAAGCAACCTTAAATATGTCGGCTGTATAGGAGCATATTCTATTGCAGAAGACCTTCCTATGAAGATCATGGAATCAAATACGGGACATTGAACTAATACTTGGACTTTGATATGAATTTCTTTAACAATTTTCTCTGCAGTGCAAGTTATTAAACTAAAGCTACTCTATTTTCAAAATGTGTTCCAACAGAAATCCTTCATAACTCCTAGCATGGTATCTTAATAAAGAATAAAGTTCTTTTAAAAATCTGCTCTAAGTAGATTTTTCCCCTTTTTTAAATTAAGGATCCCAACAGTGGTATTTTGAAATATTCTCTTGAATTTGTGCATTTAAATTTTATTGCAGTGGTATAGATGAATGCCACTGATGGTATCCTTAAATTTTATTTCTGCTCACCAAGGTTAATCATGATTGTCTATATCTTTTTTATAGTGATCACTTTTGAATTGTGTTCAGATATGCAGTTTCAGGTGTAATCATCAGAGCTGGTTAGTCAGGCATTCCAGATAGTGGTTCTTTTCAGAACCTTTTTAAAAGGGTTGGTTAACTACCTCAGTAGCAGAGGATTGAACTATACCCTGTCTGTACTGTACATAGAAAATCTTTGTAGATAAAAGCAAGGCTTGTTAAATATGATATGAGGGTAAGATTTTAATATACCAAATGTAACATTCTTAGTTGCCTTTAGTTTCAGAGGCTTGTAAGACTTCCTCATGACCATCATAACAGGCCTTGCTTTTGTCGTATTTTGTGGCTGAAAAAGCAGCCTTGCTTCTTCAGATATTGTAGTTATTTGGATGTATAATAGTTTAGCAAGATGTTACTTTTGTAAGACATCAGATGTTCAAAAAAGTGCATCCGAACTTGTACTAAATACTGCAGTGTCCCTTTATAAAAAGTCAGACTAAAACTGACAATTGTACAGCGAAGCCTGACATTTGGATATTTTGAAGTTTTTTCATAAATCATAGAAATTAGTATATGGCTGTAGTTTAGCTTTTTAGGTAAAAGGTATGTTTCATTAGTGCATTTCTTCCTGCTGATCACTGTAAACATGTGAATCAGCTTTCCATTTCTTATGCAGGTCATGATAACTTGTAGAGTAGAGTACAATCATTTGTGCTATGTTTTTAATTTTCTAAAGCACCTTGATGACAGTGAGTGTCCAGTGGTGAAGCATCCTCTATTGAACCACCCTCAAAAATTTTTTTGCCAAGTCCTAAGTTGATAGCTTAAAGTAAAAAGTGAAAATTATAGTTTCATTAGGACTTGGTGTAAAGAAATCCCCTCCCCCCTTCCCCAAAGGGATACTGCAGTTATATCACATACCCAATAGGCACCACGATGAAGATCAGAGCTTATACTTAATTAAGGTTTTATACACACCAGTTCCCCAGTAAATGCAAATTTAACAAGAAAATCAGACATGTCATATGTTCAAAATGCTCATGGCAAACAATCATTTTGCATTCCTGCAAATAAAATTGTTTTATACTGTAAGCTGGAGGCGAGTGTAACTTATTTTTGTAATAAAGTTTTTATTTTTTTTATGTGTCATTAATATAAATGTGTGTTAGTGTAGAAATCTTCTGGTTTAAAAACTTAGAATTGCACACATTTCAGTATGTTTATTTGTACTTACATAATTTTAGAATAGTGGTTGCCAATAGCCTGTATGTTTCACATTAATTGGTTTTTTGTTATCTAAATAAATCATTTTAGTATGTTGTATGTCAGTTACTGGGATAGCTGGGACATAGAGTGTAATTTAAAATTTGTCAATAAGTATTCATTGGAATATATGTAAATGTGCCTTGCCGGTTATTGAAACTTATCTACAAAATGAGTATGGGGTGACAAAAATTAGTTCCTGGTGCTTAATGAAACTTTCTGCCACTGATTTTATATATTACCCCGTGCTTTTTTAAAGTACATCTCTCTCAAAACTTAGTGTAAGTTTGAGGGCTACACAAAACATTTACATTTCATTCTAACATAATGAATATAATAGGTTGTGGAAAGTGGGTAAACTAAATGTAGCCTTCAGTAAAATTGAATCTCAGTGTAATCCTTGGTGCTGGCATTTCTCAGTTCCGAGGAGTTAAATGATCCCATCTAAGAGGTCATTGCCATGCCTATTGGCACTTTACTGTCATAGCATTTTTAAGGGACACTGTCAAGGTGTTTAAGTTCTCAGAATTACTTGTTGGGATTTTAGGACAGGTTTGTTTACTTAAAGTAAGAACTGCATTGTCAAAGTTGAAAGAGGAACACTTTTGTGAGTTCACAAATGTGTTCTTAAGAAAACATTAAAATATGGAGCTCTGGGTTTTCAAGACTATTTGGCATTCTTAATTTGGGGACTTGGGAGGGAAACTGATAAAAAGAAATTGAAGAATTGATGGTTATACTTAAAGAAGGGTAATGTAAACAGTGGTGATGAAATATATACACATCAAGTGAAATTACTTGACAGTGTTCATTTGAATGACTTTGAATTCAAGCCATTATAATTACTTTTAAAATTAAATATCATTTGCACTGTTCTGATAATGGGTGCAGTTTTTGAGCAATATAATCAGAGCTAAATATGCATGTAGTGATTAGTGATGTGAACAATTAACGTTCTGAGAAGAAATACTAACTGTGGTATTTTCAAACTTAAATTTCTGTAGTAAAATCAGTATCAAAGTCTTATCAGATCAAGGAAAAACAGGCAATGCATATAAACATACTTTTGAATGTTGTGTGGCCTATAAAGCAATAATGCAATTTATATGGAATGTCATGGGATATGAGAAATGGAAATGCAAAAATAACTAATCCTTTAGTAAAAATGTCAACATGTTAAAGGGGGAATGTTAACTAATGTAGGTTATTGCTATTTGTGATTTGTTTATGGGTTCTTGGCTTTGACAGCTTCAAAGAATGGACAGTGATAAGTTAAAAGAAATTTTGTATATTGTCAAGGAAAGGGTCTTAAATCCGAGTCAAGTCCCTTCCTTGGGGTAAAAAATGTATTCTTAAAGCATTCTGATGTTAAAAAGAAAACTTAAGTTATCTAACCAAAACAGACGCAAGATTTTGTTTCTGCAGACTACTTGGCAATCAAAAGTGATCATAAATTTAGGTTATCAGTTTTCAGAAAGTTGCTTTGTGAGAAAATTTTGTTAGATATATTCTCCCAAGCATGCTTTTTGTGGAAGGTTTTCAGCCATTGCCACTGAATCAGATGTTAAAAATGAAGGGAAAATTGAGTGTGCACACACACAACTGTTGTACACTCATGATTGCAGTTTTTAGCTTAAGAAACTTTTCTACCAGTTACTGTGAATCTGACTTAAAATGTAAAGTTTCCTCATGATAAAATAGGAACAACATAGAAATGGATTGATGGGGTGATCTGAGTTATTGTATATAAAAGTTTTTAAAGAATAGAATGAACATCAAGCTAGATAGGCAAAAATTGACACATTCAGAACAGCTTTTTTGACTGCGAAGCCAAAAGTTGTCAGAAACAGCAAAAGATCCCTTATTATTACAGAGTATTTTACGTAGTCTCTATTTTAAGGAGAGAAATTAAATAGAAGGGCTTCATGCATTTAGGGGAGGGTGCTAAAACTTCTCAAGTTCGTCAAACTTACAGGAATACCCACCATGATCATTTTCTCTCTAATTATGTATACCACAAAATTTTCATCTGGCCATAGGAATTCACTGGTGGGTGTAAAATTAATGACTAAAGAAATTAAGTGACAAATACATAAAAGAAACAGACTTGTGGGGATATTGTTTTAAGGTGTATTAATTACTCAGTGATGATACCACTCAATAGGGCATGCCACTACTTTTCTTAAGATGCTAATTATGAAGCAGTGCTCACAGGCATTTTTTAACTAGCAAATTAGTAGATGGACTTTTGGGGTCTGTCACTTTTTAAAAGTATTTAAGACTTAAATTCTATTAGCACCACAGTCTGCCTTCAGTAATACACCTAAAATATTTTTCAGGACCAGAAGCATTCAGTTTGAAAATTTGCAGATGCAAACCAGTATTATTACTAACGCTCTGGGTCAAAGATTAGGTTTTTAATATTAACAGTAGTCTGGTAAATATTTAGAAGTCTGGCATTGAGAAACAAAAGCTTGTACCTGACTAGTATTTTTATTTAAAAAAATTAGTTCTGTTAGCTTATTTAAATTGTGTTTTATTTATCCGTAGAATTTATATTTATTTCATTCCTTTCATCTCACTGAAAACTGTCTGCAGGCCCTTTGATTTGGATTAGATGTGTGAAGTACTGTCTTTTGCCAAAAACCTCAAATTACCTGTTCTTTTCAACGTAGTGGGTTTGTGCTTGTTTGGAGATCAGTTCAAAAACTATCTGTACTATCTGTACTGCCTCTGATGTTAAGATTTTATGTATAGCATAAGGAAGCTAGCTCTGACTATATTTTCCTAAGAATAAAGACCTATTTTTGTAGCATG

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