Retrocopy Name | HSBP1P2 |
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Species | Homo sapiens | |
Coordinates (hg38) | chr4:110251631-110252113 UCSC | |
Coordinates (T2T) | chr4:113553927-113554409 UCSC | |
Coordinates (hg19) | chr4:111172787-111173269 UCSC | |
Strand | - | |
Parental Sequence | NM_001537.4 | |
Parental seq. overlap | 438 bp | |
Parental seq. overlap (%) | 5.1% | |
Genomic Region |
Intergenic |
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Retrocopy Summary | HSBP1P2, located on chr4:110251631-110252113, is a retrocopy of the parental gene HSBP1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
Gene Name | HSBP1 |
Full Name | heat shock factor binding protein 1 |
Also known as | NPC-A-13 |
Coordinate | chr16:83807978-83819737 |
Strand | + |
Gene summary | The heat-shock response is elicited by exposure of cells to thermal and chemical stress and through the activation of HSFs (heat shock factors) results in the elevated expression of heat-shock induced genes. Heat shock factor binding protein 1 (HSBP1), is a 76-amino-acid protein that binds to heat shock factor 1(HSF1), which is a transcription factor involved in the HS response. During HS response, HSF1 undergoes conformational transition from an inert non-DNA-binding monomer to active functional trimers. HSBP1 is nuclear-localized and interacts with the active trimeric state of HSF1 to negatively regulate HSF1 DNA-binding activity. Overexpression of HSBP1 in mammalian cells represses the transactivation activity of HSF1. When overexpressed in C.elegans HSBP1 has severe effects on survival of the animals after thermal and chemical stress consistent with a role of HSBP1 as a negative regulator of heat shock response. [provided by RefSeq, Jul 2008] |
Species | Scientific Name | Retrocopy | |
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Chimpanzee | Pan troglodytes | HSBP1P1 |
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Bonobo | Pan paniscus | HSBP1P1 |
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Gorilla | Gorilla gorilla | HSBP1P1 |
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Orangutan | Pongo abelii | HSBP1P1 |
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Gibbon | Nomascus leucogenys | HSBP1P2 |
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Green monkey | Chlorocebus sabaeus | HSBP1P1 |
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Crab-eating macaque | Macaca fascicularis | HSBP1P1 |
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Rhesus | Macaca mulatta | HSBP1P1 |
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Baboon | Papio anubis | HSBP1P2 |
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Golden snub-nosed monkey | Rhinopithecus roxellana | HSBP1P1 |
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Marmoset | Callithrix jacchus | HSBP1P1 |
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Mouse lemur | Microcebus murinus | Without Homology |
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Mouse | Mus musculus | Without Homology |
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Rat | Rattus norvegicus | Without Homology |
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Chinese hamster | Cricetulus griseus | Without Homology |
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Rabbit | Oryctolagus cuniculus | Without Homology |
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Pig | Sus scrofa | Without Homology |
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Cow | Bos taurus | Without Homology |
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Sheep | Ovis aries | Without Homology |
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Dolphin | Tursiops truncatus | Without Homology |
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Horse | Equus caballus | Without Homology |
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Dog | Canis familiaris | Without Homology |
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Panda | Ailuropoda melanoleuca | Without Homology |
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Cat | Felis catus | Without Homology |
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Pale spear-nosed bat | Phyllostomus discolor | Without Homology |
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Velvety free-tailed bat | Molossus molossus | Without Homology |
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Greater mouse-eared bat | Myotis myotis | Without Homology |
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Kuhl's pipistrelle | Pipistrellus kuhlii | Without Homology |
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Greater horseshoe bat | Rhinolophus ferrumequinum | Without Homology |
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Egyptian rousette | Rousettus aegyptiacus | Without Homology |
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Sloth | Choloepus didactylus | Without Homology |
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Tasmanian Devil | Sarcophilus harrisii | Without Homology |
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Opossum | Monodelphis domestica | Without Homology |
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Platypus | Ornithorhynchus anatinus | Without Homology |
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Chicken | Gallus gallus | Without Homology |
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Turkey | Meleagris gallopavo | Without Homology |
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Zebra Finch | Taeniopygia guttata | Without Homology |
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Budgerigar | Melopsittacus undulatus | Without Homology |
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Painted Turtle | Chrysemys picta | Without Homology |
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Lizard | Anolis Carolinensis | Without Homology |
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Frog | Xenopus tropicalis | Without Homology |
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Zebrafish | Danio rerio | Without Homology |
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Drosophila | Drosophila melanogaster | Without Homology |
>HSBP1P2 |
TGGGCACCAGGGATATAGCCGAGACTGACCCCAAGAATGAGCAGGAACTCACCTCAGTGGTGCAGAAACTCCTGCAGCAGATCCAAGATAAATTTCAGACCATGTCTGACCAGATCATTGGGAGAACTGATGATATGAGTAGTTGCACTGATGATCTGGAAAAGAACATCGCAGATCTCATGACACAGGCTGGGGTGGAAGAACTGGAAAGTAAAAACAAGATACCTGCCACACAAGAGGTGAAGGTTGCTAATAATTTATACTGAAATCTGGAACACCATTTTTCCAAGCCAAGAGAAGATTGAATGGGTTTTTGCAGCTAACTACTATGTGTATACAGGTTTTATAAAAAGTGTGCATTCTTATCACATACTATATAGTTAGTCTATAGAGTGATTTACCCCCCAGTTTCTTAAACATAGTATCTTCACATCTTGGACCTTGGTCAATTTTGCTATTAACGATTAAACATTAAAACTTTGC |
>NM_001537.4 |
AGTCTCGTCGCGAGAAGCAGCGGCCCGGGGCGACTGAGCGGACAAACGGAAGTGTAGGTTACGGTCTGAGACATCACCGCCAAGCTGGGCATCGGGGAGATGGCCGAGACTGACCCCAAGACCGTGCAGGACCTCACCTCGGTGGTGCAGACACTCCTGCAGCAGATGCAAGATAAATTTCAGACCATGTCTGACCAGATCATTGGGAGAATTGATGATATGAGTAGTCGCATTGATGATCTGGAAAAGAATATCGCGGACCTCATGACACAGGCTGGGGTGGAAGAACTGGAAAGTGAAAACAAGATACCTGCCACGCAAAAGAGTTGAAGGTTGCTAATAATTTATACTGGAATCTGGCATTTTTCCAAGCCAAGAGAAGATCGAATGGCTTTTTGCAGCTAACTACTATGTGTAGACAGGTTTTATATTATAAAGTATGCATTCTTATCACCTAGTATATAGTTAGTTTGTAGAGTGATttccccccagtttcttgaacatggtatcttcacatcttggaccttggtcagttgtgctattcattattaaacaCTAAAACTTTGGCGGTTCTTGCATAACATTGTCAGATTTTTTAGTGTATTTCTGTGAAGTCATTTTTTTTCTTGTCATTCCTTTTGTAGTAGTTGCTGTTTGGATAAAAGTTGATGTGTGATTTTTTATTAAACAAATAGTAAACCCTTCAATTATAGTTAGTCTTGGTGAAGTAAGATGTTTGTAGACTTTAGAGTTCTTTAATTCTTGGCACAACGTGACTGTTGAGCTAACACCAAATAGTGTGTTGGCAATACTTTTCAAATGGCTGAAAACACCTAAAAATTGTTCATTCAGAAATATCTGTCACTGCTCTGTTGCCAAAACTCAGAATAGAACTTAGACGTATGTCTGAGTCCCTGAGATCACATGCTAAAGTCGATGAAAAGTAACCACTGCCACTGTCTTGTGTCAGAACTTTTACAGTACAGAAAATAACAGAATAGCCTTCTGTAATGAGGCGTTTGTTAGAGTTTTGCATGAGATTCTAATACTTCAGTAGGACCCTACCTACGTGGTTCATCTACAATGGTTACCATAAAAAATCTGGCAGGATTTTAAAACTCAATCAGTCTTTCCTTTGAGCTAGTGACTTGAAAAGAAAGAGAGAAGGAAAAGAGACCATATTAAGTCCATGCCAGTTGCTTGGCTAGAATATGATCAACGACTTGTAGTAGACTCAAGTTTTTAAAAAACACTATTTTACTTAAACTGTTTCTTATCTAAATTCTTGCAGAGTGTCAATGTTATCATTGATTATAGAAGACAGGGATAATACCTTTATCTCTGGCCACTCAAAAATGCAGTGCCAGGAGTGCTAAACCTAGAGGCCAATACTGATGACCTGGAAGGTGATCCATATGATTGTCACCACAAAGTGCTTTTACACAAAAACTTGAAAATTTGAAAAACATGATTTTTTTAAGTTTCTCATCTCACCAGTCTTGGTGTTTATATTGCAAATCTATCAAAGTAAGAAATAATTTGTGCTGTATACAAATTACATGGGGAACATAAAGGAGTGAGATCCTTCTGTGATAAAATGAATTCACCACTCTGGTTACCCAACTACAGAACCTCCTTTGATCAGGCCAGTAGGTTGTGATGCAGGCTGGAGCCCCCGAATGCCCCACACACACTGCAGCATTGACCAGACCATCCGAAACCTGCGTCCCTGGTGATGTTCTCAAGCCTCGGAAGTGGCAAATGGAAATGATATGGCCGGTTGCGGTTGTAGGAGAGTTGTGACTtaggcaggagtcgacctcctcaagtaatggaacgatttcaaaggcaggctgccctgaccaaaaatatctgccatgaataaaggtgcctgaaatcctgctatgaagcttcctttgtgtcaaaaatctgtttggttttcagatggaaatgcagaaatcacattagagtatcaactaaaacctctggacggattaagtacaagtagcccaaggcaaagcAGGAGAGGGGGTGTTGGGGGAGGTTGCCTGCTGGAAGGGGAAGCTGAGGAGCGGGAGGAGGGCTTGCCAAGACTGGCATTGCAGGAGACTTGTCTCaggtgtgttcccagaactcttgcccctggagatgctgcaggaaggaaggggttatggtcacttgggtttagacgacattctgtgaacctcatgaagaaattagcatattaaagactctgaaagtagagcagagaactcagctttaacctGCTCACCTGCTAGTTTTCGAggtctcgctctgttgcccaggctggagtgcagtggcacagtcatagctcacttggagcctgaagctcctgggctcaggcagtcctcctgcctcagcctcccaagtagctaatattacaggttcgtgccaccgcacctgggtcttgctgtgttgcccaggctggtctagaactcctaggctcaagcagtcctgtctcagcctcccaaagtgctgggattacaggctggagccaccatgcctgtccAAGGGTCTTTTTTATACTATATGAAGTATTCCTTCTCCAGCTATTCTTGTTCGTTTACCAGCCAGTGAAGATTCTCTTGAGGGCTGAACAATACAGATGAGTATGGGGGCCCTCGCACCAAGGAAAACAGCGTTACATTTAATTAAGTGCCCTGTCTCAAACCCCAAGGCCCCACAGcttcttcatttggcccctagttcatcctgctttcctttgagccacaggattttaaaatatttcaatcttattttcatatcaattttttctttgtttcactacaagtacagtcattgtttaaccctatcaggactaacacaatatttcacgtaactaagagttaatttgcccttgtgagtccttggaatttaagccccacacacacacacttagagcactgttgctatgggaacatagagtcctccaaacaaaagtgaactttttcaacatgctgtttgtaaatggaagccttccCAAGCAGACACTGTGTTCCTCTTTTATTTTGTATTTTGCACATTATATATTTTGATTAGATTAAAATGGAGGAATTTGCAGGATGTGTTGTCATATCTAGCCCTGAAAGTTAACTGGTTACAGTTACCAAATGTTCACagctagcgccattgaaagcattgactgtaaaccgctgtactgtgctaagccttttgtttgcactgtttggcttaatcctcacaacaacactgagaggttttcatttgatgagtcatatttaaagaaaaggaacccaagacggggagtcaggggcacaaggtcacagctggtaaTGATGACCCTGGAATGTCCTCACAGCTGCACACCTGCACCGCTCACAAACACAGCTGACCGTCTCACAGCTGCACACCTGCACCGCTCACGAGCACAGCTGACCGTCTCACAGCTGCACACCTGCACTGCTCACGAACACAGCTGATCGTCTGCCTCTTCGTGTGAGCTGAGCTCCGAATCTCAGCTGTCCAGGCTGTCTGGAAATCATCAGCCCCACTGGCTGGATCTCAAAATTTACTTTCAAAAGGCTGATGGAGTGTTTTCAATTAAACATGACCTAAAATTAAGTAATAAACACACTGGATGTGAGTTTTTATTTGGAATTTAAACTATTCAGAGCTGGTAGAAAATGTGTGCTCCTGGATCAGTGCCTTTTTTCTCCTAAATCAGTTGAGAACAACAACAGAAACAAATGACATTCCTCAAACATTTGCCCAGAGCACAACCACGGGGAATATGAACCACAGGTTTTCACATTGGTTTTCCATGCCTATACCTGTCCTGTCTCCCACAAAAATTATTGCTTGAGGCCCAACCCGGGGGATAAAAAGACACCCCCCCGCCACTCCGTGACCTATTAGCTTACCATCCTATTGGATTTCACTGTTTTTTGTTTTGTGGTGTTTTTTTTTTATTGCAACGAAGACTTTTAAATGGACTCATGAAGAAGCCATCACCTGGAATCTTAATCTTGCATTAATTTTAAGTGTCTGATTTTAGCTGCAGCCACTTGAGAACTTTTCAATGAATGAAAATGAGGGAGGGGAGATGCAAGTCACTGCCCAAAAACAAAACCAGAGGAATTGTGATTGAACATTGCACTTATCAACCCTACAAATTAATATGGAAATAGGAAAAGGGTTTGTTTCAACAAGTCAGGATGACAGTATTTTAAAAAAGAAAAAAaggccagcctgggcaatatactgagactccatctctacaaaaaagtagaaaaattagcccagagtgtggtggcacacatctgtgctcccagctactcaggaggctgaggtgggaggatcatttgagcccaggaagtcgaggttgcagtgagctgtgatcggacgactccactccagccggggtgacagagcaagaccctgtctcaaaaaaaaaaaaaaaGGGCGGATCCTAACGCTTGGTCCTCACACCTGAGGCTCTCACTAAGAGGTGGCTGGAAGCTCCTCAGACCGCTGCCTAGGGTTCGAGTGATCCTGAAAGCTGTACAACATCAGCCTCTGTGGGATCCCTGAGAATGATGAAATGTAATATGTGGCTGTCTCATCAACAGAGCTTCATTTTACCAAAGCATATGTAGACACCACATACATGAACTACATACCTATCGTGTAGATGCTGCCCTGCCTCATAAGAACACTCTTGACTGTCCTGCTTCACAATAATAATCTTCGCAATAATGATCTAATAATGGTCAAATTCTGTGTCTCTACCGTAGAAAACAGAATTTGACCATTTAGTCACGTTGGTCTTGCAAAATGTCCACCTTCCAAAAGAGAACAGTATTGCTTCCCAATAATTAAGAATAGTCTGGATTCAGGATCCAGCAGCttagaagcgtttagctaccaatagcaaaaatcagcccttttaacaatggtgggatgtattatttcacatggcaagaagtcccaagggagggcagctctggggcgagtaaattctgcacctcaGTAAAACTAAGAGCAAGACCCggccgggcgcagtggctcatgcctgtaatcccagcactttgggaggccgaggtgggtggatcacctgaggtcaggagttctaaaccagcctggccaacatggcgaaacccccgtctctactaaaaatacaaaaattagccaggcgtggtggtgggcgcttgtaatcccagttgctcgggaggctgagggaggaggatcgcttgaactcaggaggtggaagttgcagtgagccgagatcgtgccactgcactccagcctgggtaacagagcgagactccatctcaaaaaataaaaaacaaaaaaataaataaaaAATAAAAAGACCCAACCCCAGATTTGTTCCACCTGGGTGCATCCGGTCAGAGAATGCCTTTCTTCTTCCCTTTTGTCTCCTAAGAGTGAAGAAAATGTTTCTTTGAAGGTGTTTCCACCCCACTCCTGTGCCTAAAATGATCCTGGCAAACAGGACCCGCATGATAGGTTGAGCCATGTGGTTCTTGTttttttgttgtcacaactcaggttgggggtgttactggcatcaagagtgtagaaaccagggatgctgcgtcaacaccctaccatgcacaggacaaccctcaccccaaagagtggcacagccccaagtgtcaacagtgctgaggttgaggaatccCAGCTTAACCCATTCATGAGACCACCTGAGCCTGGTGTAACGGTTCTGCTGATAGTTTCCGGACCCTCAGAGGTGGAGACATAAGAgaacaataccagggttccatcagaaaggaaatcagaatggctatcgggtggacaacctacagtgtttgctacaGACCTTCTAGATGTAACTTCTAGATTATAAACACTGGTAACACTGGAGATGGTTAAATCGGAATTAGCtgactgtcaaccttggtggcacattagaatcacctggggagcagttcaaaggcccaaaactgggcagcaccacagaaccctcacatcagaatccccatgggtgggcccagacagcagtgttcatcttagactccagtgtgcagtcgaggtcgagaacTGCATTCAAGAAGGCCTGTCTACTGCGAACCGTCCGATGATGTAATTCACCAAGTTCCATGGGATTCCGCCACGCCCGTGTCAACCCAGCTGACACGTCCAACTTGGACAATCAGGGCTTTGACCCCCGTTACCTGGCATTCAATTCAATCCATGTGTCACGCATGCCCCAACAATTTGTGTCCCAACTGTTTGAATCAAAGGATTTCTGATTCCCTGATGGGTGATGACTCAGTAACCGGATTCAGCTTCAGATCTGCCTGACATTTTTCCTGCCTGTCCtgggccaggtatggcgctagctgctttcacctgtatcatctcattcactgctcaGAGGCTCTCGAAAGCTGTTGACATTATCAAAAAGTTTTCCAGCTGGAATTCATCTCCCTCTAATCAGCCTTCAAAACCTCCATTTGTAAACCATTGCTGTAGTTTTATtacctcttaccttggtctttacaagttgctgtcaaaacccagtaagtgtttacagaaagaaactttacatattaaatatcttaaaggtcttttatgcagaatatgcagttaattttgatgggctatggataatcatcagaagagccatttctggaaatgtaaataatatggctgtttcttttaacagtgcattctcctgaaaacataagaccatttgactgattctgctccagaatcttattgaggcaaaggactggaccgaattattcatggaacagaagcctaggactggtaagtccaggaaatgctgcaaaacaatgccctcaaaagaaatcagcctttccctttgataggtatctctcctgcaagccaggctcaggtgcgcctcaattagaacctgtgttcgctggggccataattaagaatcttaaagggaaagaatgttttgaaagccatctgtcaaaagtacgcAGTCTTGCTTGTAGAATTTTAGAGGTTCATGGTTACCGTGGGTCGGCACTGGGTCTGTGAGCCCTCATCCCCAGggctcggtttcctatcagaatccttgtctggaaggttgattatatcagatgcgcattttgccagcatcctcagaaggagatgcgaggaagattcttttcctgggccactctcattttctcaaacttggacaagtcttaacaataatctgtgacccaactttgtcttccccatgatgaaaaacagaccccatagaaactctctggcacaAAAACTCTGGAATCACTGACCCCAGACATTGTTCCCTGCCATCCACTCTGCCAGACATTTCTTGGATTTATTCAAGCTGACTTGTATTCCAGAACAATTGTGGACAAGATTTGCTAGTAATGCTTCCAACAAGTTACCGTTTAGCAAGTTCAGAACTTGAAGAATCCCTTTTATCCTAACGCTGACTAATAAACTGGTGAGAACTGTTTGAAATACCCATAAGTCAATGGAGGTCGTAATTTGCTTTTATGCTGTATTAAACACCACTGAGATGTTAAGGTCTTTCTTGGGAACCACCGTGATGTTCTCTTCTGGACTCTTCGTAACCCCTTCAGCAGACGACCCTGTATCTGGTCTTGGTTCTGAAAGGTTTGCAGCGGCACCTAAGTCACTGAAGTTCTGGCAGAATTCATTCTCCTGCTCTCTACTGGGACTTGTTTTCCATAATTGGTCTGAGAACAACAGATTTTTTTCTTTTTTGCCTCGGATTTCAACAAAACATACATGGAAAGAATATTTTCTTCCTTGGAGACATTTCCCATAGGGcagtggttcttaaaatacgttcctgaaccggcagcatcagaatcccctgggaacgtgctggaaatgtagatccccaggccctacctagccctactgaatcagagaccctgggagggaggtccagcagcctgggttttaacacatcctccaggcgattctgaGAGTGAGAGAGCCAGGGCCTTCGGGCATCAACCTTGGGGCGAGGGTGTTGGGTTGCCCAACACCCTTTAGTCTAATGGCTTTAGGGTCAAATATGTCTAAACCAagaagccccatggggcactgattagcatgcaggtccccaggccccctttttgtagatcctgattcagaatatctgggacgggggctggagattcatatttttaataaattcccTCATTTATTATTTTTGTGTCTTATTTCCCATACACAAAAACACTGCGTAGAGAAATGGGAGTGTGGGCGATGCTCCCATGCTGGGAGTCTCAGGCCTGGGCTAGTCCTAAAATAATTGAAAAGGAATTGATTCTTAATTACCCAGAACGTCCACGCTCTAGGACCTAGTGTGACCTCTTCTGCCTTCTGAACCGAGGAGTCCACCCCTAAGCCCGAGGAACTGAGCGTGAAGAGCCCTGACGCCATGAAGACTTGAATCACTTTAAAGCAATTTGCTTCTTATTAAAATGTACTTCAGTAAAAAATCATTTCAACTCTTAAGCCACAAAAGGATATCCAATCATTTAAAGCTTCCTGAGTGTTTCGGTTGATTAAAAAGCTTTTAAAGAGCATAGTAAATATTTTACCAGAAGGATAAGTTATTCAGTATGGAGATTATTTATTAAAAACTAGTAATTTATT 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