Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name HSBP1P2
Plot displaying the genomic locations of a retrocopy (in chr4) and its respective parental gene (in chr16). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr4:110251631-110252113  UCSC
Coordinates (T2T) chr4:113553927-113554409  UCSC
Coordinates (hg19) chr4:111172787-111173269  UCSC
Strand -
Parental Sequence NM_001537.4
Parental seq. overlap 438 bp
Parental seq. overlap (%) 5.1%
Genomic Region Intergenic
Retrocopy Summary HSBP1P2, located on chr4:110251631-110252113, is a retrocopy of the parental gene HSBP1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name HSBP1
Full Name heat shock factor binding protein 1
Also known as NPC-A-13
Coordinate chr16:83807978-83819737
Strand +
Gene summary The heat-shock response is elicited by exposure of cells to thermal and chemical stress and through the activation of HSFs (heat shock factors) results in the elevated expression of heat-shock induced genes. Heat shock factor binding protein 1 (HSBP1), is a 76-amino-acid protein that binds to heat shock factor 1(HSF1), which is a transcription factor involved in the HS response. During HS response, HSF1 undergoes conformational transition from an inert non-DNA-binding monomer to active functional trimers. HSBP1 is nuclear-localized and interacts with the active trimeric state of HSF1 to negatively regulate HSF1 DNA-binding activity. Overexpression of HSBP1 in mammalian cells represses the transactivation activity of HSF1. When overexpressed in C.elegans HSBP1 has severe effects on survival of the animals after thermal and chemical stress consistent with a role of HSBP1 as a negative regulator of heat shock response. [provided by RefSeq, Jul 2008]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes HSBP1P1
Bonobo Pan paniscus HSBP1P1
Gorilla Gorilla gorilla HSBP1P1
Orangutan Pongo abelii HSBP1P1
Gibbon Nomascus leucogenys HSBP1P2
Green monkey Chlorocebus sabaeus HSBP1P1
Crab-eating macaque Macaca fascicularis HSBP1P1
Rhesus Macaca mulatta HSBP1P1
Baboon Papio anubis HSBP1P2
Golden snub-nosed monkey Rhinopithecus roxellana HSBP1P1
Marmoset Callithrix jacchus HSBP1P1
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>HSBP1P2
TGGGCACCAGGGATATAGCCGAGACTGACCCCAAGAATGAGCAGGAACTCACCTCAGTGGTGCAGAAACTCCTGCAGCAGATCCAAGATAAATTTCAGACCATGTCTGACCAGATCATTGGGAGAACTGATGATATGAGTAGTTGCACTGATGATCTGGAAAAGAACATCGCAGATCTCATGACACAGGCTGGGGTGGAAGAACTGGAAAGTAAAAACAAGATACCTGCCACACAAGAGGTGAAGGTTGCTAATAATTTATACTGAAATCTGGAACACCATTTTTCCAAGCCAAGAGAAGATTGAATGGGTTTTTGCAGCTAACTACTATGTGTATACAGGTTTTATAAAAAGTGTGCATTCTTATCACATACTATATAGTTAGTCTATAGAGTGATTTACCCCCCAGTTTCTTAAACATAGTATCTTCACATCTTGGACCTTGGTCAATTTTGCTATTAACGATTAAACATTAAAACTTTGC
>NM_001537.4
AGTCTCGTCGCGAGAAGCAGCGGCCCGGGGCGACTGAGCGGACAAACGGAAGTGTAGGTTACGGTCTGAGACATCACCGCCAAGCTGGGCATCGGGGAGATGGCCGAGACTGACCCCAAGACCGTGCAGGACCTCACCTCGGTGGTGCAGACACTCCTGCAGCAGATGCAAGATAAATTTCAGACCATGTCTGACCAGATCATTGGGAGAATTGATGATATGAGTAGTCGCATTGATGATCTGGAAAAGAATATCGCGGACCTCATGACACAGGCTGGGGTGGAAGAACTGGAAAGTGAAAACAAGATACCTGCCACGCAAAAGAGTTGAAGGTTGCTAATAATTTATACTGGAATCTGGCATTTTTCCAAGCCAAGAGAAGATCGAATGGCTTTTTGCAGCTAACTACTATGTGTAGACAGGTTTTATATTATAAAGTATGCATTCTTATCACCTAGTATATAGTTAGTTTGTAGAGTGATttccccccagtttcttgaacatggtatcttcacatcttggaccttggtcagttgtgctattcattattaaacaCTAAAACTTTGGCGGTTCTTGCATAACATTGTCAGATTTTTTAGTGTATTTCTGTGAAGTCATTTTTTTTCTTGTCATTCCTTTTGTAGTAGTTGCTGTTTGGATAAAAGTTGATGTGTGATTTTTTATTAAACAAATAGTAAACCCTTCAATTATAGTTAGTCTTGGTGAAGTAAGATGTTTGTAGACTTTAGAGTTCTTTAATTCTTGGCACAACGTGACTGTTGAGCTAACACCAAATAGTGTGTTGGCAATACTTTTCAAATGGCTGAAAACACCTAAAAATTGTTCATTCAGAAATATCTGTCACTGCTCTGTTGCCAAAACTCAGAATAGAACTTAGACGTATGTCTGAGTCCCTGAGATCACATGCTAAAGTCGATGAAAAGTAACCACTGCCACTGTCTTGTGTCAGAACTTTTACAGTACAGAAAATAACAGAATAGCCTTCTGTAATGAGGCGTTTGTTAGAGTTTTGCATGAGATTCTAATACTTCAGTAGGACCCTACCTACGTGGTTCATCTACAATGGTTACCATAAAAAATCTGGCAGGATTTTAAAACTCAATCAGTCTTTCCTTTGAGCTAGTGACTTGAAAAGAAAGAGAGAAGGAAAAGAGACCATATTAAGTCCATGCCAGTTGCTTGGCTAGAATATGATCAACGACTTGTAGTAGACTCAAGTTTTTAAAAAACACTATTTTACTTAAACTGTTTCTTATCTAAATTCTTGCAGAGTGTCAATGTTATCATTGATTATAGAAGACAGGGATAATACCTTTATCTCTGGCCACTCAAAAATGCAGTGCCAGGAGTGCTAAACCTAGAGGCCAATACTGATGACCTGGAAGGTGATCCATATGATTGTCACCACAAAGTGCTTTTACACAAAAACTTGAAAATTTGAAAAACATGATTTTTTTAAGTTTCTCATCTCACCAGTCTTGGTGTTTATATTGCAAATCTATCAAAGTAAGAAATAATTTGTGCTGTATACAAATTACATGGGGAACATAAAGGAGTGAGATCCTTCTGTGATAAAATGAATTCACCACTCTGGTTACCCAACTACAGAACCTCCTTTGATCAGGCCAGTAGGTTGTGATGCAGGCTGGAGCCCCCGAATGCCCCACACACACTGCAGCATTGACCAGACCATCCGAAACCTGCGTCCCTGGTGATGTTCTCAAGCCTCGGAAGTGGCAAATGGAAATGATATGGCCGGTTGCGGTTGTAGGAGAGTTGTGACTtaggcaggagtcgacctcctcaagtaatggaacgatttcaaaggcaggctgccctgaccaaaaatatctgccatgaataaaggtgcctgaaatcctgctatgaagcttcctttgtgtcaaaaatctgtttggttttcagatggaaatgcagaaatcacattagagtatcaactaaaacctctggacggattaagtacaagtagcccaaggcaaagcAGGAGAGGGGGTGTTGGGGGAGGTTGCCTGCTGGAAGGGGAAGCTGAGGAGCGGGAGGAGGGCTTGCCAAGACTGGCATTGCAGGAGACTTGTCTCaggtgtgttcccagaactcttgcccctggagatgctgcaggaaggaaggggttatggtcacttgggtttagacgacattctgtgaacctcatgaagaaattagcatattaaagactctgaaagtagagcagagaactcagctttaacctGCTCACCTGCTAGTTTTCGAggtctcgctctgttgcccaggctggagtgcagtggcacagtcatagctcacttggagcctgaagctcctgggctcaggcagtcctcctgcctcagcctcccaagtagctaatattacaggttcgtgccaccgcacctgggtcttgctgtgttgcccaggctggtctagaactcctaggctcaagcagtcctgtctcagcctcccaaagtgctgggattacaggctggagccaccatgcctgtccAAGGGTCTTTTTTATACTATATGAAGTATTCCTTCTCCAGCTATTCTTGTTCGTTTACCAGCCAGTGAAGATTCTCTTGAGGGCTGAACAATACAGATGAGTATGGGGGCCCTCGCACCAAGGAAAACAGCGTTACATTTAATTAAGTGCCCTGTCTCAAACCCCAAGGCCCCACAGcttcttcatttggcccctagttcatcctgctttcctttgagccacaggattttaaaatatttcaatcttattttcatatcaattttttctttgtttcactacaagtacagtcattgtttaaccctatcaggactaacacaatatttcacgtaactaagagttaatttgcccttgtgagtccttggaatttaagccccacacacacacacttagagcactgttgctatgggaacatagagtcctccaaacaaaagtgaactttttcaacatgctgtttgtaaatggaagccttccCAAGCAGACACTGTGTTCCTCTTTTATTTTGTATTTTGCACATTATATATTTTGATTAGATTAAAATGGAGGAATTTGCAGGATGTGTTGTCATATCTAGCCCTGAAAGTTAACTGGTTACAGTTACCAAATGTTCACagctagcgccattgaaagcattgactgtaaaccgctgtactgtgctaagccttttgtttgcactgtttggcttaatcctcacaacaacactgagaggttttcatttgatgagtcatatttaaagaaaaggaacccaagacggggagtcaggggcacaaggtcacagctggtaaTGATGACCCTGGAATGTCCTCACAGCTGCACACCTGCACCGCTCACAAACACAGCTGACCGTCTCACAGCTGCACACCTGCACCGCTCACGAGCACAGCTGACCGTCTCACAGCTGCACACCTGCACTGCTCACGAACACAGCTGATCGTCTGCCTCTTCGTGTGAGCTGAGCTCCGAATCTCAGCTGTCCAGGCTGTCTGGAAATCATCAGCCCCACTGGCTGGATCTCAAAATTTACTTTCAAAAGGCTGATGGAGTGTTTTCAATTAAACATGACCTAAAATTAAGTAATAAACACACTGGATGTGAGTTTTTATTTGGAATTTAAACTATTCAGAGCTGGTAGAAAATGTGTGCTCCTGGATCAGTGCCTTTTTTCTCCTAAATCAGTTGAGAACAACAACAGAAACAAATGACATTCCTCAAACATTTGCCCAGAGCACAACCACGGGGAATATGAACCACAGGTTTTCACATTGGTTTTCCATGCCTATACCTGTCCTGTCTCCCACAAAAATTATTGCTTGAGGCCCAACCCGGGGGATAAAAAGACACCCCCCCGCCACTCCGTGACCTATTAGCTTACCATCCTATTGGATTTCACTGTTTTTTGTTTTGTGGTGTTTTTTTTTTATTGCAACGAAGACTTTTAAATGGACTCATGAAGAAGCCATCACCTGGAATCTTAATCTTGCATTAATTTTAAGTGTCTGATTTTAGCTGCAGCCACTTGAGAACTTTTCAATGAATGAAAATGAGGGAGGGGAGATGCAAGTCACTGCCCAAAAACAAAACCAGAGGAATTGTGATTGAACATTGCACTTATCAACCCTACAAATTAATATGGAAATAGGAAAAGGGTTTGTTTCAACAAGTCAGGATGACAGTATTTTAAAAAAGAAAAAAaggccagcctgggcaatatactgagactccatctctacaaaaaagtagaaaaattagcccagagtgtggtggcacacatctgtgctcccagctactcaggaggctgaggtgggaggatcatttgagcccaggaagtcgaggttgcagtgagctgtgatcggacgactccactccagccggggtgacagagcaagaccctgtctcaaaaaaaaaaaaaaaGGGCGGATCCTAACGCTTGGTCCTCACACCTGAGGCTCTCACTAAGAGGTGGCTGGAAGCTCCTCAGACCGCTGCCTAGGGTTCGAGTGATCCTGAAAGCTGTACAACATCAGCCTCTGTGGGATCCCTGAGAATGATGAAATGTAATATGTGGCTGTCTCATCAACAGAGCTTCATTTTACCAAAGCATATGTAGACACCACATACATGAACTACATACCTATCGTGTAGATGCTGCCCTGCCTCATAAGAACACTCTTGACTGTCCTGCTTCACAATAATAATCTTCGCAATAATGATCTAATAATGGTCAAATTCTGTGTCTCTACCGTAGAAAACAGAATTTGACCATTTAGTCACGTTGGTCTTGCAAAATGTCCACCTTCCAAAAGAGAACAGTATTGCTTCCCAATAATTAAGAATAGTCTGGATTCAGGATCCAGCAGCttagaagcgtttagctaccaatagcaaaaatcagcccttttaacaatggtgggatgtattatttcacatggcaagaagtcccaagggagggcagctctggggcgagtaaattctgcacctcaGTAAAACTAAGAGCAAGACCCggccgggcgcagtggctcatgcctgtaatcccagcactttgggaggccgaggtgggtggatcacctgaggtcaggagttctaaaccagcctggccaacatggcgaaacccccgtctctactaaaaatacaaaaattagccaggcgtggtggtgggcgcttgtaatcccagttgctcgggaggctgagggaggaggatcgcttgaactcaggaggtggaagttgcagtgagccgagatcgtgccactgcactccagcctgggtaacagagcgagactccatctcaaaaaataaaaaacaaaaaaataaataaaaAATAAAAAGACCCAACCCCAGATTTGTTCCACCTGGGTGCATCCGGTCAGAGAATGCCTTTCTTCTTCCCTTTTGTCTCCTAAGAGTGAAGAAAATGTTTCTTTGAAGGTGTTTCCACCCCACTCCTGTGCCTAAAATGATCCTGGCAAACAGGACCCGCATGATAGGTTGAGCCATGTGGTTCTTGTttttttgttgtcacaactcaggttgggggtgttactggcatcaagagtgtagaaaccagggatgctgcgtcaacaccctaccatgcacaggacaaccctcaccccaaagagtggcacagccccaagtgtcaacagtgctgaggttgaggaatccCAGCTTAACCCATTCATGAGACCACCTGAGCCTGGTGTAACGGTTCTGCTGATAGTTTCCGGACCCTCAGAGGTGGAGACATAAGAgaacaataccagggttccatcagaaaggaaatcagaatggctatcgggtggacaacctacagtgtttgctacaGACCTTCTAGATGTAACTTCTAGATTATAAACACTGGTAACACTGGAGATGGTTAAATCGGAATTAGCtgactgtcaaccttggtggcacattagaatcacctggggagcagttcaaaggcccaaaactgggcagcaccacagaaccctcacatcagaatccccatgggtgggcccagacagcagtgttcatcttagactccagtgtgcagtcgaggtcgagaacTGCATTCAAGAAGGCCTGTCTACTGCGAACCGTCCGATGATGTAATTCACCAAGTTCCATGGGATTCCGCCACGCCCGTGTCAACCCAGCTGACACGTCCAACTTGGACAATCAGGGCTTTGACCCCCGTTACCTGGCATTCAATTCAATCCATGTGTCACGCATGCCCCAACAATTTGTGTCCCAACTGTTTGAATCAAAGGATTTCTGATTCCCTGATGGGTGATGACTCAGTAACCGGATTCAGCTTCAGATCTGCCTGACATTTTTCCTGCCTGTCCtgggccaggtatggcgctagctgctttcacctgtatcatctcattcactgctcaGAGGCTCTCGAAAGCTGTTGACATTATCAAAAAGTTTTCCAGCTGGAATTCATCTCCCTCTAATCAGCCTTCAAAACCTCCATTTGTAAACCATTGCTGTAGTTTTATtacctcttaccttggtctttacaagttgctgtcaaaacccagtaagtgtttacagaaagaaactttacatattaaatatcttaaaggtcttttatgcagaatatgcagttaattttgatgggctatggataatcatcagaagagccatttctggaaatgtaaataatatggctgtttcttttaacagtgcattctcctgaaaacataagaccatttgactgattctgctccagaatcttattgaggcaaaggactggaccgaattattcatggaacagaagcctaggactggtaagtccaggaaatgctgcaaaacaatgccctcaaaagaaatcagcctttccctttgataggtatctctcctgcaagccaggctcaggtgcgcctcaattagaacctgtgttcgctggggccataattaagaatcttaaagggaaagaatgttttgaaagccatctgtcaaaagtacgcAGTCTTGCTTGTAGAATTTTAGAGGTTCATGGTTACCGTGGGTCGGCACTGGGTCTGTGAGCCCTCATCCCCAGggctcggtttcctatcagaatccttgtctggaaggttgattatatcagatgcgcattttgccagcatcctcagaaggagatgcgaggaagattcttttcctgggccactctcattttctcaaacttggacaagtcttaacaataatctgtgacccaactttgtcttccccatgatgaaaaacagaccccatagaaactctctggcacaAAAACTCTGGAATCACTGACCCCAGACATTGTTCCCTGCCATCCACTCTGCCAGACATTTCTTGGATTTATTCAAGCTGACTTGTATTCCAGAACAATTGTGGACAAGATTTGCTAGTAATGCTTCCAACAAGTTACCGTTTAGCAAGTTCAGAACTTGAAGAATCCCTTTTATCCTAACGCTGACTAATAAACTGGTGAGAACTGTTTGAAATACCCATAAGTCAATGGAGGTCGTAATTTGCTTTTATGCTGTATTAAACACCACTGAGATGTTAAGGTCTTTCTTGGGAACCACCGTGATGTTCTCTTCTGGACTCTTCGTAACCCCTTCAGCAGACGACCCTGTATCTGGTCTTGGTTCTGAAAGGTTTGCAGCGGCACCTAAGTCACTGAAGTTCTGGCAGAATTCATTCTCCTGCTCTCTACTGGGACTTGTTTTCCATAATTGGTCTGAGAACAACAGATTTTTTTCTTTTTTGCCTCGGATTTCAACAAAACATACATGGAAAGAATATTTTCTTCCTTGGAGACATTTCCCATAGGGcagtggttcttaaaatacgttcctgaaccggcagcatcagaatcccctgggaacgtgctggaaatgtagatccccaggccctacctagccctactgaatcagagaccctgggagggaggtccagcagcctgggttttaacacatcctccaggcgattctgaGAGTGAGAGAGCCAGGGCCTTCGGGCATCAACCTTGGGGCGAGGGTGTTGGGTTGCCCAACACCCTTTAGTCTAATGGCTTTAGGGTCAAATATGTCTAAACCAagaagccccatggggcactgattagcatgcaggtccccaggccccctttttgtagatcctgattcagaatatctgggacgggggctggagattcatatttttaataaattcccTCATTTATTATTTTTGTGTCTTATTTCCCATACACAAAAACACTGCGTAGAGAAATGGGAGTGTGGGCGATGCTCCCATGCTGGGAGTCTCAGGCCTGGGCTAGTCCTAAAATAATTGAAAAGGAATTGATTCTTAATTACCCAGAACGTCCACGCTCTAGGACCTAGTGTGACCTCTTCTGCCTTCTGAACCGAGGAGTCCACCCCTAAGCCCGAGGAACTGAGCGTGAAGAGCCCTGACGCCATGAAGACTTGAATCACTTTAAAGCAATTTGCTTCTTATTAAAATGTACTTCAGTAAAAAATCATTTCAACTCTTAAGCCACAAAAGGATATCCAATCATTTAAAGCTTCCTGAGTGTTTCGGTTGATTAAAAAGCTTTTAAAGAGCATAGTAAATATTTTACCAGAAGGATAAGTTATTCAGTATGGAGATTATTTATTAAAAACTAGTAATTTATT

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