Retrocopy Name | TRIM38P1 |
|
Species | Homo sapiens | |
Coordinates (hg38) | chr4:165664349-165665735 UCSC | |
Coordinates (T2T) | chr4:169011025-169012411 UCSC | |
Coordinates (hg19) | chr4:166585501-166586887 UCSC | |
Strand | + | |
Parental Sequence | NM_006355.5 | |
Parental seq. overlap | 1021 bp | |
Parental seq. overlap (%) | 10.8% | |
Genomic Region |
Intergenic |
|
Retrocopy Summary | TRIM38P1, located on chr4:165664349-165665735, is a retrocopy of the parental gene TRIM38. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
Gene Name | TRIM38 |
Full Name | tripartite motif containing 38 |
Also known as | RNF15|RORET |
Coordinate | chr6:25962723-25991231 |
Strand | + |
Gene summary | This gene encodes a member of the tripartite motif (TRIM) family. The encoded protein contains a RING-type zinc finger, B box-type zinc finger and SPRY domain. The function of this protein has not been identified. A pseudogene of this gene is located on the long arm of chromosome 4. [provided by RefSeq, Jul 2012] |
Species | Scientific Name | Retrocopy | |
![]() |
Chimpanzee | Pan troglodytes | TRIM38P1 |
![]() |
Bonobo | Pan paniscus | TRIM38P1 |
![]() |
Gorilla | Gorilla gorilla | TRIM38P1 |
![]() |
Orangutan | Pongo abelii | TRIM38P1 |
![]() |
Gibbon | Nomascus leucogenys | TRIM38P1 |
![]() |
Green monkey | Chlorocebus sabaeus | TRIM38P1 |
![]() |
Crab-eating macaque | Macaca fascicularis | TRIM38P1 |
![]() |
Rhesus | Macaca mulatta | TRIM38P1 |
![]() |
Baboon | Papio anubis | TRIM38P1 |
![]() |
Golden snub-nosed monkey | Rhinopithecus roxellana | TRIM38P1 |
![]() |
Marmoset | Callithrix jacchus | TRIM38P1 |
![]() |
Mouse lemur | Microcebus murinus | Without Homology |
![]() |
Mouse | Mus musculus | Without Homology |
![]() |
Rat | Rattus norvegicus | Without Homology |
![]() |
Chinese hamster | Cricetulus griseus | Without Homology |
![]() |
Rabbit | Oryctolagus cuniculus | Without Homology |
![]() |
Pig | Sus scrofa | Without Homology |
![]() |
Cow | Bos taurus | Without Homology |
![]() |
Sheep | Ovis aries | Without Homology |
![]() |
Dolphin | Tursiops truncatus | Without Homology |
![]() |
Horse | Equus caballus | Without Homology |
![]() |
Dog | Canis familiaris | Without Homology |
![]() |
Panda | Ailuropoda melanoleuca | Without Homology |
![]() |
Cat | Felis catus | Without Homology |
![]() |
Pale spear-nosed bat | Phyllostomus discolor | Without Homology |
![]() |
Velvety free-tailed bat | Molossus molossus | Without Homology |
![]() |
Greater mouse-eared bat | Myotis myotis | Without Homology |
![]() |
Kuhl's pipistrelle | Pipistrellus kuhlii | Without Homology |
![]() |
Greater horseshoe bat | Rhinolophus ferrumequinum | Without Homology |
![]() |
Egyptian rousette | Rousettus aegyptiacus | Without Homology |
![]() |
Sloth | Choloepus didactylus | Without Homology |
![]() |
Tasmanian Devil | Sarcophilus harrisii | Without Homology |
![]() |
Opossum | Monodelphis domestica | Without Homology |
![]() |
Platypus | Ornithorhynchus anatinus | Without Homology |
![]() |
Chicken | Gallus gallus | Without Homology |
![]() |
Turkey | Meleagris gallopavo | Without Homology |
![]() |
Zebra Finch | Taeniopygia guttata | Without Homology |
![]() |
Budgerigar | Melopsittacus undulatus | Without Homology |
![]() |
Painted Turtle | Chrysemys picta | Without Homology |
![]() |
Lizard | Anolis Carolinensis | Without Homology |
![]() |
Frog | Xenopus tropicalis | Without Homology |
![]() |
Zebrafish | Danio rerio | Without Homology |
![]() |
Drosophila | Drosophila melanogaster | Without Homology |
>TRIM38P1 |
CTCCACCTGTTCTGTGAAGACAAGGGGCAGCTCATCTGCTGGCACTGTGAGCGGGCACCGCAGCACAAAGGGCACACCACAGCTCTTGTTGAAGACGTATGCCAGGGCTACAAGGAAAAGCTCCAGAAAGCTGTGACAAAATTGAGGCAACTTGAAGAGGAGTGCACAGAGCAGAAGGTGTTCACAGCAATGCACATAACTAAATGGACATCACTGCATGAATTTAGACAGCAATAATGGAAATTGCAATTTTATATCTCCTCATGAGAAGACACAAATTCAGAGACAAAAAAATCGTTTGACTTTAAGAATCTCCAGAGTTTCCTACATGAGGAGAAGAAGTCTTATCCCTGGAGACAGGAGAAGGAAGAACGATAGACTCTGAATAGACTGAGGGACCATGGGACCAGTCTGGGGCTGAATTCAAGAGCCACATGCTGGAACTGGAGGAAAAATGTCGGGGCTCAGCCCAAAAATTGCTGCAGAATGTGAATGATACTGTGGGCAGGAGTTGGACTGTGAAGCTGGAAACATCAGAGGCCTTCTCCTTAGAGCTTCATACTATGTGCAACATTTTTGAGCTTTATTTCCTGTAATGTGAAGAAAATGTTAAGGAGCCATCAgTCAACATGACTCTGGATCCAGATACAGCTCATAGTGAACTAATTCTGTATGAGGATTGGAGAAAAGTGACTTGTGGATATCCCCAGGACCATCACAGCACTTCTTCCAGGAGATTTAGTGCCTTCCCCTGTGTCCTGGGTTGTGAGGGCTTCACCTCTCAGGAAGATGCTCCTTCAAAATGGATGCTGGAAAACGAACCAGGTGGGATTTAGGAGTTTGTATGGCAATATGCAGAGGTGCACTGACATGAAGCAAGAGCCTCAGTCTGGATTCTGGAACCTCGGACTATGCCAAAAGAAAGGCTATGTAGCCCTTACATCTCCCTTAACTTCCCTTCATATGTGTGAGCAGCCCTTGGTTGTGGGAGTGTTTCTGGACTCTGAGGCTGGAGTTGTATCCTTTTACAACATGAGTACTGGCTACCACATCTTCACCTTCCCAAAGGCTTCCTTCTCTGATACTATCCGGCCCTATTTCCAGGTTTATCAATATTCTCCTTTGTTCCTGCCTCCCCCAGATGGTTAAGGAAAAGAGCAAAGTCTCATTGGTTTAACCATCACAGAGAATATAATGTAAATCCCATAAGGGC |
>NM_006355.5 |
GTTAACTTCCTGACCCAGGAAGTGGCAGCAACAGAGGGGACTAGCAGCGAATATACTTTACACCAAATCTCAGAAGATTCAGAACTTAGATGAGTGGGGCCCAGGACAGGAACCCTGGAGCCTTGGAAGGAGGGGAGCCCCATCTCCCCAGAAGAGCAGTGACCCCAGCAGAGAGGGGCCTGGTGTATCACTGGAGGAAATAGCCTGCCAAGGAATACACGTCTTCAGAAGAAATTCTGTGTGGCTTCAAGAGACTGATCAAATTGTGAGAGGAAAACAGCCTACCCGgtcctcttttcttcaatacaaaatgagataataggggttggaaggaaaaCCTTCAAGACCTATGGAAGTCAGTTGCAGCCAGCTCATCACATAGAGGTGCAGGTGAGGTGTATTTTCATCACGGTGGAAAATTCTGGCTGCTTCATCTCCATCTCTAGAGCCAATATTGGAGCTTTTCAATAAAAGCTATGGCCTCAACCACCAGCACCAAGAAGATGATGGAGGAAGCCACCTGCTCCATCTGCCTGAGCCTGATGACGAACCCAGTAAGCATCAACTGTGGACACAGCTACTGCCACTTGTGTATAACAGACTTCTTTAAAAACCCAAGCCAAAAGCAACTGAGGCAGGAGACATTCTGCTGTCCCCAGTGTCGGGCTCCATTTCATATGGATAGCCTCCGACCCAACAAGCAGCTGGGAAGCCTCATTGAAGCCCTCAAAGAGACGGATCAAGAAATGTCATGTGAGGAACACGGAGAGCAGTTCCACCTGTTCTGCGAAGACGAGGGGCAGCTCATCTGCTGGCGCTGTGAGCGGGCACCACAGCACAAAGGGCACACCACAGCTCTTGTTGAAGACGTATGCCAGGGCTACAAGGAAAAGCTCCAGAAAGCTGTGACAAAACTGAAGCAACTTGAAGACAGATGTACGGAGCAGAAGCTGTCCACAGCAATGCGAATAACTAAATGGAAAGAGAAGGTACAGATTCAGAGACAAAAAATCCGGTCTGACTTTAAGAATCTCCAGTGTTTCCTACATGAGGAAGAGAAGTCTTATCTCTGGAGGCTGGAGAAAGAAGAACAACAGACTCTGAGTAGACTGAGGGACTATGAGGCTGGTCTGGGGCTGAAGAGCAATGAACTCAAGAGCCACATCCTGGAACTGGAGGAAAAATGTCAGGGCTCAGCCCAGAAATTGCTGCAGAATGTGAATGACACTTTGAGCAGGAGTTGGGCTGTGAAGCTGGAAACATCAGAGGCTGTCTCCTTGGAACTTCATACTATGTGCAATGTTTCCAAGCTTTACTTCGATGTGAAGAAAATGTTAAGGAGTCATCAAGTTAGTGTGACTCTGGATCCAGATACAGCTCATCACGAACTAATTCTCTCTGAGGATCGGAGACAAGTGACTCGTGGATACACCCAGGAGAATCAGGACACATCTTCCAGGAGATTTACTGCCTTCCCCTGTGTCTTGGGTTGTGAAGGCTTCACCTCAGGAAGACGTTACTTTGAAGTGGATGTTGGCGAAGGAACCGGATGGGATTTAGGAGTTTGTATGGAAAATGTGCAGAGGGGCACTGGCATGAAGCAAGAGCCTCAGTCTGGATTCTGGACCCTCAGGCTGTGCAAAAAGAAAGGCTATGTAGCACTTACTTCTCCCCCAACTTCCCTTCATCTGCATGAGCAGCCCCTGCTTGTGGGAATTTTTCTGGACTATGAGGCCGGAGTTGTATCCTTTTATAACGGGAATACTGGCTGCCACATCTTTACTTTCCCGAAGGCTTCCTTCTCTGATACTCTCCGGCCCTATTTCCAGGTTTATCAATATTCTCCTTTGTTTCTGCCTCCCCCAGGTGACTAAGGAAAAGAGCAGAAGCTCCTTGGTTTAACCAGCACAGAGAAAATaatataaatcccataagggcagacgtttggtctgttttcttcgctgtcatttccttagtagttagactagtgctgagattttagtggatatataattgatttatgttgaatatatggaCTTAGCAACTAAAAATACCACAGATGGTTAACCTGGACTGGGGCAAAGCAAGATAATAGTGATGATCGTATGTTGCTGTCTCCATCCGTCTTTAATGGGTCAGGGCTTTGATTTCCAAGGGTCTTCAGGTGATGAGTAGGGGTACCCACAAGTCAGAAGGTCTGCGTTCTCCTAGTTTGTTTGCTGCCATTTGAACTCATGTAGGGAATGAAAGAAAGCTGCAATTATCCGCCAACTGCATTTaaaacaaaacaaaacagaaaaatcaaaataaCATTGACTCTTCCAACCACTGACATGTTGTTTAATAATCTAAGCGGCAGTCCTGGAGGCTACCAGACTTACTGAGTTCTACCTGAGAAACAGCCAAGCAAAGTGTGAGAGAAGGGTTAAGACTGGCTTACAATGAGATGCTTCAAATGAAAAGGGAATTATGAGTAAAATTGAACTTTGATGGGGGATTCAGTTCTGGAAAAGAATTTGGTATTTTCCAGTCTGCTAGGACCAATTACCTTGAAATATTTTAAAATCTCAGTAAATAGTTATTGCTGAAATGGCTGTTGGCAGTTCTTATTATGATTCAGAGAAGAGCAAATAGACCTTAACTTCATTTTGAAAAAGACCAAATTACCATACCCGAGTGAGTAATGACAGGACTACAACTAAAACATAAACAACATTAATGATGACCATAAAAAGTCACAAAATTGCTAAATGTTATAATTTAGAGTTGACATAAAAATTGATggccaggcatggtggctcacgcctgtaatcccagaactatgtgaggctgaggcaggtggatcacttgaggtcaggagttcaacaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagccgggcatggtggtaggggcctgtaacccagctactcgtgaggccaaggcaggagaattgcttgagcctgcagcagctgcagtaagccaagatcatgcTGTGCCTCAAGGAAAAAAAAAATTAATGTTTACTGATATTTGTTGAAGTCCTACAACATCACCTCTGAGAATAGGAGAAATGAAGCAACAGTTGTGTCTAGATGTCAGAGGCATGGCTGGGCCTCCATCTCTGCCTAAGGGAGATATAAAAGAGTTCAAACTATTGCCCATGTTCCCCAGGGTCAGAAGTTCTAATTATGATGATAGAGGCTGGGTTGTAAGTAGTAAGtgaagggtagcagaatatgccatctttggcataagaagtattttgagttgaagacaattgagaaaaaaaatagattaaaaacaaacaaacacctctgccctctccctatttgcctaaaagcaggatatgaaattgtgaaggtgtcttcttactcggggaagaacaaaagttagtcaccagagactttagactcttatcagcctggacatagcaccagagaagtctttttttttaaaaaaaaaaaaaaaaaaagggaaagaaaaagttgccttcccacaatttactgcactagaaactcaaagtccttttcgtcttccttgtcacttaaaaaatgtattcttttcttaaaatgctatataagcccaagttctaaatcctcttttgagtattcatctcagtactcccctgtgtttgtacaatgcacatgctttgtttctgtcttgtcaatctgtcttttgttagtctacttgatagggccacagatggagaacctaagatgaatagaaaaaaaagatttttctccccaacaGAAGGATTATCGCCAGTTGCACTTGTTCTATATACCCGTAGTCTCGGTATGCTGACCCAGACTTGGGTAATAGGACCCAGTGGGTAACCGAGGAACCCCACCTTTGTGCAGGATCAGTGAAGATGTAATCTGGATATTCATAAGCTCTTCTCTACCTCTTGGCATCCCACAGTCCTGTGTTAATGTAAGTGTGGTCTTCCCCAGAAAGGGGAGGCCTCCCTAACATTGTTAAAGCCTAGCATATGCtgcttagaggaaattctatatccctaagcacttagattgctgaataagaaagaatgataataaaataaacaattaaataaaagttttaaaaaatgaataaaataaacctgtggaaactataaggaaggccagaagaaatataaaattggagattaatTGGGGTGCAGGAAAGTTATGGAAAGAATATAAGTCCTGCTAGATAAATCATTAGCTATTTTAATAAAGAAtacagaagaaaataggaacaaaagaatatatactggaataattttgagagtaatttgaagaattagatgcaaataaatttgaaaacctttaaaaagaaaccaatggcctaactgacccaagaagggaaagaaaatctaaacagactgataaATACAAAATGAAATTCAGACACTTACAGAGCAgccaggcatggtggctcacacctgtaatcctgtcactttgggaggctgagatgggaggatcacttgaggctaggagtttgagactagcctgggcaaggctcccatctctaaaagaaaagaaattagctgggcatggtggcatgtgccttagtttcagctactcaggaggctgagacgaggattgcttgagcctaggagggcaaggctgcagtgagccatggtcatgccactgaattccagcctaagtgacagagcaagaccttgtctcaaaaaaaaaaaaaaaaaaaGTTACAGAGCTCCAACTAAATAATGTGGGGAACAAAAGAAAAAAGAAGATGATTTTATGGCTGATTTTTTTTTTAAGGAAAAGCAATTCAtgtacccttgaagattagattaagttctataaaatagcccaaaatgacagtggctgaaacaagtttatttctctcccatttaaagcaagtctagatgtggaagtctgggaagcccagaaaatccaggtcttgtttgtgtatggaaactccagaaaatcacagattccttccagccacccctcaattacccctgggatccaagagagccactaaagttccagccatcatactcacaacccaagttgtaggatggaaaaaaggacacaaaagtagggtgaagagcatgtgtgcaacagctctcttttactctagtgtcctaaaacctatcataaaacctttggcttgccttgcattagccagaatttagtacatggccacacttaagaagtcagaaagattagctttttttccagggtagttggctgaaaatcaggagttctcatattaaaaaacagagaagggacatcgaatagatgaccaacaatctccttcacaCTCATACTATTTAAACTGTCCTAGTCAATGACCAAAAAAGAAAAGCCTACAAACTCATTGATATAAAAGCTTAACAAAGGTACTCCCCGCCCCCCGCCCGCCACACACCATCCCCAAAAGGAAATTTCTAATCCAATTAACAgtcttaggttgggctgctgaaacaaaataccacagcctgagtgacttaaacaacgacaatttatctctcactgttctgaggtctgagttgattctttgtgaaggccctttcctagcttgcagatggctaccttcctgctatgtcttcacatggcaaagagagagctagctttctggtcttttcttataagggaccagtcccatcatgcccatcatgaagactcgatctgctaggatctcaactaaacctaactatcacccaaagagcccacctccaaagaccatcacattgaatgtgagagtttctacatatgcattgtgggaaacacaaacatttacttcaACTGTAACTATTGAAGCAAAAATGTCcccccaccatagacatccagcaccacagtagtacatttattacaattgaacttacattgacacgtcattatcaacgaaagtctgtaatttacattagggtttattcttggtgttgtgctttctatgggttttgacaaatgtataatgtcatgtattcaccattatagtatcacagaagtttcactgccctaaaaatcctgtgttctgccttttcaacacttcctgtcacccaatttctatcaactaatcttttgactgtgtccatagttactgtcttttctagagtgtcatacagttgtgaagcaggaagcaggagtgaactccggaggcagggactttactccggaccagattgaagactagccgaaacagggacgaggttaaagcacctctccataagacacgcccaccagcgccatgtcagtttttcgttgccatggcaacaacaggacattatcgacttctttcctctgtacctactccgaagttaccactctttttctagaaatttctgcataatcccccttaacatgcacttaactaaaagcaggtatattactgcagaactgcccctgagctgctactctgggcacattacttatgggttagccctgctcagcaaggagcagtacctgttctgctgttgtacactgctgcttcagtaaaagttgctaacaccaccacttcacccttgaattcttcccgggctaagccctaatttttggcttgcttgccctgcatcagttggagtcatatagtatgcagtcttttcaggttggctttttagtaacatacatttaagtttccttcatgtgttttcatggcttgatcgtttcttttctttttctttttcttttttcttttctttctttttttttttttttttgagacagaggagtcttgctctgttgcccaggctgaagtgcagtggcactggctcactgcaacctccatctcccaggttcaaacgattctcatatctcagcctcccgagtagctgggattacaggctcacgccactatgcccggctaattggggttttcccatgttgaccaggctggtctcaaactcctggcctcaagcaatccacccacttcggcctcccaaagtgaatgcatttctttttaactctaaataacattccattattcagaagtaccacagttatccacttacctactgaaagacatcttgtttccaagttttggataaattatgaataaagctgctataaacatctatgtgcaggtttttgtgtggagataagttttcaattcctttggataaatactaaggagtgtgattggtgaatcttatggtaaaagtatggttacttttgtaagaaaccaccaaactgtcttccaaagtgattgcacattttgcattctcaccagtaatgaacaagttactattgctacatatctttgcaacctttggtgctgacagtgttctaaattttggtcattctactaggtatgcagtggtatctacttgttttaatttgcagttccctaatgacatgatgtcaagcatcttttcatatgcatacttgcatctgtgtatcttctttggtgaacagatgttcaggtcattggcctgctttaaatcaggttattttcttactgttgagttttaagtattctttgtatattctaaaaatattgttcttcatcagatctgtcttttgcaaacattacctgccaatgtgtggcttttcttcaacacttctttgtaaatttgcaagtcctttgagaaaagaaatgcacccaaagtattaatttggcaatctcatatcacgagagtactctaaagctaaataaattacagtttttcaaattttgaattaattgatctttgctattgttagcaaggtcttgtattcttttttttttttttttttttttttaatagagacgggtcttgctacagtgcccaggctggtctcgaactccaggcctaaaatgatcctcctgccttggccttccaaagtactgggattacaggcataagtcaccacgctcagccatctggtattctttagcaactgtttggtaacttaatctttcactttttgaaaacaaaaaatagtttttttctcatagttttctaacaaaatcttcataactgaaataatttctctttatcacctcttcttataaatatggttttctttttttaaataaaaatttaagacattttataactggccaaatttactagcttagatactattagatagtcaatattttttgttggatatttgatttttatttcaggcaactaatatctattcatttttgcactgttggaagaaaattactgatcaaattcactatgtatttgcagaaaatggctttcaatattgtctactttatcatcctttttttttTTttctttcttcctttttagatacagggtctcactatgttgcccaggctggtctccaacttctgggctcaaacaatcctccctccttggccttccaaagggttggATATGTTTTATCTacagttttgttgttttgttctgctacaggatatttgcaattgccatttatcatgaaattcatgacataccttcttccactctcctttttatctttattgttctggttataggactagctttgcatctctactcaattctgtatcagtagtatgctttcattttaaattttaagtttgtccatatgtatattgacacagggtcttgctctgttgcccagactggagtgcagtggcaagatcagggctcactgcagccttgactgcctaggctcaagtcatcctcccacctcagcctccagaatggctgggactacaggcacgcaccaccacacatggctcatttttttgtattgagacagggtttctccatgttgcccaggctggtcttgaactactgggctcaagcaatcctcccaccttagcctcccaaagtgttgggattacaggcttgagccaccatgcctcgcttctacacttatttttaattctaaaataatttataataataaatattaacaattagatttaattactgataaatattaaatgttaaataggttttattaaataattaaataaaaatgaaaataatcagtatttcaatttaattactaattataattcacagttatccttgtaactcctaatgtctatataaaagatttttatattttttaattcttaaaattttattatttatttCACACCAGGCCATCACTGTGATACATTTTTTAAAACACATTAAATTATCACCAGAAAAGTGCTGTGATGGAAAATATAAATTGAAATACCTTTTCTGGTTAGGAGAGTAATTCTGTTTTTCTGATAGAGAATAGAAGAGTCCTTCAGGCCCCTCCAAACTGTCATATTCCGGGCATCGGGTGTCCCCATCCTCACTTCAGTCCACAGGCAGGGTCCTCAGTCTTCAGCGCTCCTTCTCTTTCCCCTttgtcttgtgtctccttgggtctcttttctccaagacctaaactccctgaggacaggactattttttacatcttgatgtcactcctgagcacttgCTTTAATGTGTTGGACACTGGGTCCATTAAAGATTGTATGTGAAATTATAAAA |
PMID - Link | Title |
---|