Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name APOOLP1
Plot displaying the genomic locations of a retrocopy (in chr5) and its respective parental gene (in chrX). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr5:145997216-145998374  UCSC
Coordinates (T2T) chr5:146531613-146532771  UCSC
Coordinates (hg19) chr5:145376779-145377937  UCSC
Strand +
Parental Sequence NM_198450.6
Parental seq. overlap 1007 bp
Parental seq. overlap (%) 15.5%
Genomic Region Intragenic (SH3RF2)
Retrocopy Summary APOOLP1, located on chr5:145997216-145998374, is a retrocopy of the parental gene APOOL. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name APOOL
Full Name apolipoprotein O like
Also known as CXorf33|FAM121A|MICOS27|Mic27|UNQ8193
Coordinate chrX:85003852-85093315
Strand +
Gene summary This gene encodes a protein which contains an apolipoprotein O superfamily domain. This domain is found on proteins in circulating lipoprotein complexes. [provided by RefSeq, Sep 2011]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes APOOLP1
Bonobo Pan paniscus APOOLP1
Gorilla Gorilla gorilla APOOLP1
Orangutan Pongo abelii APOOLP1
Gibbon Nomascus leucogenys APOOLP1
Green monkey Chlorocebus sabaeus APOOLP3
Crab-eating macaque Macaca fascicularis APOOLP1
Rhesus Macaca mulatta APOOLP1
Baboon Papio anubis APOOLP1
Golden snub-nosed monkey Rhinopithecus roxellana APOOLP1
Marmoset Callithrix jacchus APOOLP1
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>APOOLP1
GGAAAACTGACAACCATGCCTGCAAGTCTGATACATGCATCTGTAAATGTACATGGAACCAAAGAAGAGGAATCCAAAAAGCAGCTAGTGAAACCAGAGCAGCTCCCCGTATATACTGCACCACCGCTCCAGTCTAAATATGTTGAAGAGCAGCCTGGTCATTTATAAATGGGCTTTGCTTCCATCTACACTGCAACTGGTCATTATACTGGCTGGTGCAAGGATGTTTATGTCTTTGTGAAAAATGGGATAATGGATACAGTACAATTTGGGAAAGATGCTTATGTCTATCTGAAGAATCCTCCTCGAGATTTTCTTCCGAAAATGGGAGTTATTACGGTTTCAGGATTGGTGGGCTTGGTTTCAGCGAGAAAAGGTTTTAAGTTTAAGAAAATTACTTATCCTCTGGGACTGGCCACTTTATGAGCAACTGTTTGCTACCCAGTTCAGTCAGTAATAATTGCTAAGGTAACAGGGAAAAAGGTATATGCTACAAGCCAGCAAATTTTTGAAGCAGTTAAATCATTGTGGACAAAAAGCAGCAAAAAAAGAGTCACTCCCTAAACCTAAAGAAAAAAAATTAAGCTAGGATCCCCCGCCGAAATAGAAGTACCTGCAAAAACAACTCACATCTTGAAATGCTCAGTGCCCTTGCCAACAGAACTCAGCTCTGAAGCAAACACCAAATCAGAATCCACCTCAGGTGCTACACAGTTTATGCCTGACCCCAAGTTCATGGATCACAGGTGGTCCCACCCAGAACATATAGACAAGTATAGCACTGGAACCTGAAGCAGACTGCATAGAGAGACTACATAGAAAACTACAAGATGTATGAAGTTGCAAATAATGATGAAAAAAATCATGTAATGGGTAACTGATACATAGAGTATTATTTAAACCAAGTTTTTCCCTTACCTCTCCAAATGTGCAATTTGATAAATTGCATAAGTGGTTAACACACAAACTGTGAATGCAATGCAAACAATATTAAATGATTGATGAGGAGACTTAGGTAGAAGTATTAGCTTGAATTTAATGAGCTTTAGGGGCCCATAGTTGACATGAACTCCAGTGAGACTAAA
>NM_198450.6
CTCCGTCTGAAAACCTTGGCCGAAAGGGTTGTAGACATGGCGGCCATCAGGATGGGAAAACTGACAACCATGCCTGCAGGTCTGATATATGCATCTGTAAGTGTACATGCAGCCAAACAAGAGGAATCCAAAAAGCAGCTAGTGAAACCAGAGCAGCTCCCCATATATACTGCACCACCGCTCCAGTCTAAATATGTTGAAGAGCAGCCTGGTCATTTACAAATGGGCTTTGCTTCCATCCGCACTGCAACTGGTTGTTACATTGGCTGGTGCAAGGGTGTTTATGTCTTTGTGAAAAATGGGATAATGGATACAGTACAATTTGGAAAAGATGCTTATGTCTATCTGAAGAATCCTCCTCGAGATTTTCTTCCGAAAATGGGAGTTATTACAGTTTCAGGATTGGCGGGCTTGGTTTCAGCGAGAAAAGGTTCCAAGTTTAAGAAAATTACTTATCCTCTGGGACTGGCCACTTTAGGAGCAACTGTTTGCTACCCAGTTCAGTCCGTAATAATTGCTAAGGTAACAGCAAAAAAGGTATATGCTACAAGCCAGCAAATTTTTGGAGCAGTTAAATCATTGTGGACAAAAAGCAGCAAAGAAGAGTCACTCCCTAAACCTAAAGAAAAAACTAAGCTAGGATCCTCTTCCGAAATAGAAGTACCTGCAAAAACAACTCACGTCTTGAAACACTCAGTGCCCTTGCCAACAGAACTCAGCTCTGAAGCAAAGACCAAATCAGAATCCACTTCAGGTGCAACCCAGTTTATGCCTGACCCCAAGCTCATGGATCACGGGCAGTCCCACCCAGAAGATATAGATATGTACAGCACTAGAAGCTGAAGTAGACTGCATGCAGAGACTACACAGAAAACTACAAGATGTGTGGCGTTGCAAATAATGATGAAAATAAATCATGTAATGGGTAACTGATACATAGAGTATTACCTAAACCAAGTTTCTCCCTTACATTTCCAAATATGCCATTTGATAAATTACATAAGTGGTTAACACACAAACTGTGAATGCAGTGTAAACAATATTAAATGATTGATGAGGAGACTTAGGTAGAAGTATTAGCTTGCATTTGATGACCTTTAAGGGCACTTAAAAAAAAATGAAGACATGAATTCTAGTGAGATTAAAATCTAAAAATACatatatatatatgtatgtataaatacatacatatttatacatgtataaatacgtatttatacatatatgtataaatacatatacatatatgtataaatacatatacatatttatacatatatgtataaatacatacatatttatacatatatgtataaatacatacatatttatacatatatgtataaatacatacatatttatacatatatatgtataaatacatacatatttatacatataAACATATATTTCTGCTCTAGCTTTCCCAGATTAATGCTAGTTAAATTAGAATGGTGTATGGAAAGGTGTGTTTCCCTCTGtttttttttttttttttttttttttttttCCCATTTCCTAGAGCTGGAATAAAATATCCATGTTTTATGGGACTTGAGCTTGGCTTTGTCCCTTGGTTTTGTTAATGTTAATTCCTCTTAAATATCTAAAAACATCTCTACCTATTTGAGAGGGCCATATGCTACACAggcttcctaatactgcttagcaatccttctactggttcctaagtggtttactattgtgttccctggaagaggtattacaaacgttttattcttctcaagcctcttagaactgtcaaagttgactgtgcctcctatttcatagagaaaaaactaaattattagatatgaccattcccaaaacttcttcccatctaccttcaagacttacctcttttcagccatgcatcccccttttctaagacatgcttctctttgtgttcttgacctcattccttcccatctaAGACCATATTCCACCCTGTTTAATTTCTAGTCTTCGGTTTCTCTTTTTACAGTGAGCAAATTAGAAGAATAGGTTAGAAGAATAGGGTAGTAGATACTGTAGTTTCTTTCCTCCACCTCTACATAGCTGCAGGTCTTCTCTGTCTTAAATCAACAATAACAAAACAAGACAAAAACCTTTCCTTAACTTGGCCTCTTCCCTTGAACTATTTTTTCTCTCTCCTTCCTATAATTGTTATACTTCTTTAAAAAGTAATTGTTACTTTTTGACAAAAGTAAATATTGTCCCTTTTTTCCCTACTTTCAAGTCCTCTCTGTCTTGTGACATTCTGGCCTCCATACCTGCTTAAttttttttgagatggggtcttgctctgttgcccaggctggagtgcagtggcacaaacacagctcactgcaacctccacctcccaggatcaagcaatcctcccatctcaccctcccaagtagctgggactataggcacccgccaccatgcctaattttttgtatttttggtagtgacagggtttcaccatgttgtccaggctggtctcgaactcctgagctcaagcatctgtccgactcagcctaccacagtgttgggattacaggcgtgagccaccgcacccagccCCTACTTGAATTTTTATGTCATTATTGACTCTTCACCACTCTCTCCTTGAGACTCACTTATCCCTTTGCTCTCTATTTTTCCTGCTTTTGTTATTCTTCATTTTTCTTCTCTTGCTCTGAATCCCTTAAATGCTGAGGCTGCTCAAGTTTCATCCCTAGTCCTATTTTCTCATTCTATATGCACACTCATTTTTCATTTAACAGACTTCACTGGCTTCAGGCACCATTTGTTTTATTATTCATATTTTCAACCCCCATATCTCTCTAGTGCTGTAGACCTTTATTTCTACTTACTAGTTATATTCACCTAACATCCCATAGATATGCCAATGTCAATGTGCCTAAAACAAAATTGTCTCTACCTCCCGCTCCTTCAAATCTATTCTGTCTTCTCTAATCCTATAATTACTCTCCCTCAAGTCATCATCATCACTTTTCTGGGTTACTGTAATAGCCTTCAGGCTAATTTGCTCACTGTCAATCTTGCTGTCTCTCATTTCAGAATATGTTCTGCTTGCAGGTGACAGTAAACTAGTTAAACAAATATTTAATATTAGCTTAAGCAAAAAAAAAAAAAAAGGCCTATCCTATTTATagcctagaattaggcagtatagggttgggacagtggctcattggtgctatcaaggacgtagactttttctctttccactctgtcctctacagcatgctggtttgtcacctcatggtcacaagatgtctgctgtacctccagggagcagatacacattcaaagtaggaaatagcagataaaaatgtacacaagatgcgtctgactcccttttaccagaaaagtaaatgctttcttagaatctcctcagaagacctctgtgtatatctcaaccagtacttgtcatatagccacacacttagctcaaggaagatagggaaTAGGGAAATCATGTTTCTTTTCCCCTGTGGTGAGGAAGGCAAGGGGTAAGGGGTTGGGAACAGGTGCTGAATTAAAGCTAACATACAGTATCTACTACCCTATTCTTCTAACCCATTTGTCTATTATGATATAGTTGTCTTGACAACTATAATGAATAGCTGTCTTTCTGaaatctttagtggctcatcattgcctgcagaatcaaaactccttagtctgatatacaaggcccttcatatctgattccagcttaccttctaatcctatcttccctctccttacccaccctactgctaatgtgtattatattgtctttatgacataccatttgtttcttgaacatgctttgctcattattgcctctttctctgcctgtgctagtgtgtcctcttagaatgttcttccatcttatcctgctctacattctaacttctacccatcctacaagtccaattccagtgtcatgttccctttctcaatcctccagggtagaatttagatgttctGTCttttagagataggtattgctatgttgcccaggctggtctcaaactcatggcctcaagcgatcctcccacctcagccaaccagacatgagtgactgtgctcagccTTTTTTAAAAAAATGAAGGTATTTGGTATggccgggtatggtggctcacacctataatcccagcactttgggaggccaaggtgggtgaatcacctgaggtcaggagtttgagaccagcctgaccaacatagtgaaaccctgtctctactaaaaacacgcaaaaagtgcaaaattagctaggcgtggtggctcatgcctgtaattccagctacttgggaggctgaggcaggagaatcacttgaatccgggaggtggaggctgcagtgagccgagatcgtgccattgcacttcagcctgggcacaagaacaaaactcagtctcaaaaaataaataataaaaaataaaGGTATATAATATGTcttagatttgatgaaatatgagtgtgtttgagatctgatccaaggttttaaaaaattcatttcaaatcctggagataaattctgaggagcttacttatgaaaaactagcaagTGATAGCTGGTATTTACAGATATGGTACTTTACACAATTTATGTAATTAATATTTTCTCACAGACAAGGTTCCTTGTGGATATCACTGAATAATTTTTGTGTAGTTTCTATGCCCATGAAGTGCCTGGTAGGTAGTAGGAACTCACACGTTCTGCTATGCTGGTTGCAGCACAGGACACAAAAGTTAGAATTATTTCAAAGGACTTATACTCTACTAGGAAAGAGAGAAACATAGAAATATAGTGTTGTATGTGGTATCTTCCCTAAGATAAGTACAACCAAAGAGCTATGGATGTTCAGAGATAGAATGTAGTACTGGGATGATGTCAAGGAGGCAGTGGTACTTAAGCTGCTcaaggtagggaagcagtttacttgctagtttttcataagtaagctcttcagaatttatctccagtatttgaaatgaatttttttaaacctcagatctgaatatattcaaacacccatatttcatcaaatctaagGCATATCATATACCTTTAATTTAAAAAAAAATGCTGagcagagttgcttatgtctgggaggctgaagtgggaggattgcttgaggccaaaagtttgagaccagcctgagcaacatagcaagatcctgcctctaaaaacaaacaaacaaaaaATGCtgccagttgatcattacatttatcccgacatcagatatgtcaaattgtgaaaagcaccttaattttgatgaaatatgATAGGTAAAAAATAGCGcaaagctaagtataagtgacttttaaattatctgctcttttggattatcactactgctactagccgttagaatattggtttggataatggaaagttgactAGAGCTACAAAATCTGTTTCAAAATAAAAGATCTGCTCAAACAAGAATGTGATGATCACTTGCTGTATTGTACAACAAAGTCAAACTGCTGTTAGACTCAGGTGACAGTCAAATGTTGGAGGCTGTGTTGGGATGAGTTGTTACAAAGCCTCTTTCATTCTTCCCATGCCATGTCCAGGAGTTCTTCTCTGTTAAACCTGAAGAGATGCCAGCCCTCCTCAGAGGAAAGGTCTAAAGCCCCTCGACTAGTATAGTAGTTGATAGAAGCCTGGTTCCAAATGACGACAAGAAAGTGCATGCAGTTACATTGAGTTGTGATGGCTATCTGTTTAAAAACAAACAAGCAAATATTACTTTCATTTGAAAGTATAATCttcgttaacacatatattttattgaaggtctactctatgcaagacactatGTGTGAATAATACTTCCAAATATAGTAGTTACCTTTTGAACTTTTCTATAGCTGTAAAAAGAAAAAAGTCTCACTGTTCTGAGCTTTAAAGCCCTCTTTAAAATCTCAAAACTGATTTGCAAAGCCTTTATCATACAGAAAAGGTGTACCTAAAAGAACACATGTTCTCATATGTTTCCAAAATACAAGAAGATCTTGCTTTTATAGTCTTGTAATATTCATACTGTGAGCCTGTGTTTTTGAATAAAAATGCTTTCTAATCTCCCTCCTTCTTACTTTCCCTTGATAGCAAAAAGGGTGTATAGTGTGGTTGTGGATTATATATAAATCAATTTTAATTGACTATAATTCATATACTGTATATGATCATCTGATTTGAAAATCCAGTTTAATTTGGGTAGAAATTTGAAGTATATGTTGGGGTTATGTTCAAATGGTGAGATTAATGATTTAATTTATGCCCTGTGAATATTTATTAAGAAAAGGTTAATGTATAGAATATCAATACTAATTGTAATACATACCTGACTTAGCCTCTTCAGCATTTCAGCTCCAATACCTAGGCCTTTTAAATAGACAATGCAAAGTGAAAACTGCAAATTTCACTTAACTTGTTATTTGCTTTAGTTTAAAATAAATAATATCTAAAACTCTG

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