Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name C1GALT1P2
Plot displaying the genomic locations of a retrocopy (in chr5) and its respective parental gene (in chr7). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr5:56192377-56196253  UCSC
Coordinates (T2T) chr5:57019949-57023825  UCSC
Coordinates (hg19) chr5:55488204-55492080  UCSC
Strand +
Parental Sequence NM_020156.5
Parental seq. overlap 2816 bp
Parental seq. overlap (%) 44.7%
Genomic Region Intragenic (ANKRD55)
Retrocopy Summary C1GALT1P2, located on chr5:56192377-56196253, is a retrocopy of the parental gene C1GALT1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name C1GALT1
Full Name core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
Also known as C1GALT|T-synthase
Coordinate chr7:7182544-7248616
Strand +
Gene summary The protein encoded by this gene generates the common core 1 O-glycan structure, Gal-beta-1-3GalNAc-R, by the transfer of Gal from UDP-Gal to GalNAc-alpha-1-R. Core 1 is a precursor for many extended mucin-type O-glycans on cell surface and secreted glycoproteins. Studies in mice suggest that this gene plays a key role in thrombopoiesis and kidney homeostasis.[provided by RefSeq, Sep 2010]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes C1GALT1P1
Bonobo Pan paniscus C1GALT1P1
Gorilla Gorilla gorilla C1GALT1P2
Orangutan Pongo abelii C1GALT1P1
Gibbon Nomascus leucogenys C1GALT1P3
Green monkey Chlorocebus sabaeus C1GALT1P1
Crab-eating macaque Macaca fascicularis C1GALT1P1
Rhesus Macaca mulatta C1GALT1P1
Baboon Papio anubis C1GALT1P1
Golden snub-nosed monkey Rhinopithecus roxellana C1GALT1P1
Sloth Choloepus didactylus C1GALT1P14
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>C1GALT1P2
TGCTGCCGGAGACTGATCTGGGCGGCAGTTGGCGGCCTCGGCTAGCGGCCAGGAGCCACTTCTGCGGGTGCCCAGAGAAGCAAAAGTCGCCGGTCCCATGTCGTCGCCCTCTCTGCCCCCCAGGAGGGGCAAGAGGGAGCCACGGCCGATGACAGAAATACACTTTCCGAGATGGCCTCTAAATCCTGGCTGAATTTTTTAACCTTCCTCTATGGATCGGCAATAGGGTTTATTTTATTTTCTCAGCTACTTAGTATTTTGTTGGGAGAAGAGGGTGACACCCAGACTAATGTTCTTCATAATGATCCTCATGCGAGGCATTCAGATGATAATGGACAGAATCATCTAGGAGGACAAATGAACTTCAATGCAGATTCTAGCCAACGTAAAGATGAGAACACAGACATCGCTGAAAACCTCTATTAGCAAGTTAAAATTCTTTGCTGGGTTATGACAGGCTCTCAAAACCTACAGAAAAAGGCCAAACATGTCAAAGCTACATGGGCCCAGCGTTGTCTAAAAGTATTTTTTATGAGTTCAGAAGAAAATAAAGACTTCCGTGCTGTGGGATTGAAAACCAAAGCAGGCAGAGATGAGCTATACTGGAAAACAATTAAACCTTTTCAGTATGTTCATGAACATCATTTAGAAGATGCTGATTGGTTTTTGAAAGCAGATGATGACACATATTTCATACTAGATAATTTGAGATGGCTTCTTTCAAAATATGATTCTAAAGAACACATTTATTTTAGGAGAAGATTTAAGCCCTTTGTAAAACAGGGCTGTATGAGTGGAGGAGCAGGATATTTACTAAGCAAAGAAAGCCTTGAAAAGATTTCTTGATGCATTTAAAACAGACAAGTGTCACATAGTTCCTCCACTGAAGACTTAGCACTGGGGAGATGCATGGAAATTATAAATGTAGAAGCAGGAGATTCCAGAGATCCCACTGGAAAAGAAACTTTTCATCCCTTTGTTTCAGAACACCATTTAATAAAGGTTATCTACCTAGAACCTTTTGGTACTGGAATTACAACTATTATCCTCCTGTAGAGGGTCCTGGTTGCTGTTCCGATCTTGCAGTTTCTTTTCACTATGTTGATTTTACAACTGTGTATGTGTTAGAATACCTCGTTTATCATCTTCATCCATATGGTTATTTATACAGATATCAAGCTACCTTACCTGAAAATATACTAAAGGAAATTAGTCAAGCAAACAAAAATGAAGGCACAAAAGTGAAGTCAGGAAACCCTTGAAAGAAAATCATGAATGAACAAAGGTAAAATGTCTAGCATTGCCCTGAAGAAGGACTTCTGCATTTCTGACATAGAGCACTGGAATCCCAGTGAGGAATTCTAAGTGAACATTCCATATAGAAATCTTTCACTTGAATGACTATAAACTGAAGCTTTAAATGAGCTGTGAAGTCTGTTAAAATGTGTTTTGATACAGTCAGAAGAACTTGTGTTTTTAAAATGGTGGCCAAGTAGAGGAACTAGAAAAGAGATTTTGTTGTCTATTTTTGACCATCTGTATTATTGTCACTGAGAAACTAAAACAATTGAATTTGCTAAAACTACACTGCACCATATTAGTAATAAACAGATCTGCCTTAAAGAAAATTTTAGTTTTATAAAGAAATATTGTTGCTCAGTGTTGTTAATACAGCTCAAGAGTTGAGTTTATATTTGCAGGATGATATAAATGATCCAACCCCCCCAACACATATAGTTTTTGTCTAATGGAAATTTTGCTGTGATTATTTATAATTGGCAGTATTTCTTCCAGAAGAAGCTAAAATAAGACTGGCACTTATCCTGAAGTTCCTTAATAAAACCGCACTTTAAAATTATCATGGGCCTTGACTATATTATATATTTGATTCTAATTAGTAATCCTTTACTGAATCTCTGTTGTCTCTTTTCTAAATATGTTTAGCCACCCTTGAATACCATTCTCCACTATTAATATTAATTTACTCAAAGTATTCACAGCATTCTGTAAACATGTATTTGATAATATTTGTTCCCAAATTTACCCATTGTTAATTATGGGTGACTAATAATAAATTTAATGCTATTTGAGGATGCTTTTCTTGTATCAGTGCCACTCTCAGGAATTACTAAGTGACATTTTAAATTGATTATTTTAAACTCTTTCTAACTACATAGTTATGATTTCTTTCATTCTCATCCTGTTGAGAGATGAGAACGTGTTTGTGCCTTTCATAACTTGTTTAAAGCAGAGTTTTAGAATTCATTTTTAGGATCTAAGGTGGCTATTAGTTACACTGGCAAGATTATTTTGAATGCAAGATTTTGACAAGAATTAATTAAAAACAATAGAAAATGCAGAGTGCTTAAATGTGATATATTGAAAGAGTAGATACTTAACTTATAAATAGCAATCTGAAGGTTGATGCTGACTTACTATTTTGGGATAATTGTCTTGCCAATGGATAATTCTAACAACGCAGAATACCTATTCAAGGCTGTCATCAAAAACATTCACAAATGTTTCATTCTATTTTTAGTGACTCTGTTTAAAGACTTTCTGAAAGGAAAGAACATTTTTATTTTTATTATCTTTAGCAATACTGAGTGTGTCATAACAGAATATTTTACAGACTTTCTATGAGATTATCTTTAGTGGCACAAAAGATTTACATTTCCCTTATGTTTATCATTATGCCAATTTTACATGGCTGTCATGCCACTTACTCTGCTGTTTAGCTAAACAATAGCTAAATAATTTCTATTTATTGTGCCAAAACATGTCAAAATCATGACTCTTTGAATGGTTTATTTGAGAGGATGTTCATTTCATTGGCTAACCATGGATTACTCTGCCCACATAGTGAAAACATGCACCAATTTTTACCTATTATCATGGTAGTATCATCTGCCAAAATTTCAAGGCATTCATTTTATTCTTTGAACAACTCTTTACCATAGTGTGGACATGAATTTTCATATGTGTTACTTGACTAGAAGTATAAATGGTTTACTATAAATATCCAAAAACCTTAAGATTTGCTCA
>NM_020156.5
AGGAGACTTCGGGTGGCGGCTGCGCCATAGGCGGGCCACGGCCTGGACGCGCTGCGGGGAGGGGCGGAGCGAGCGGGCGGGAGCGCGCGCTGGGCCCGCCTTGGCCGCCGCCGCTGTGCTGCCGCTGCCGGGGAATAATCTGGGCGGCAGCGGGCGGCCTCGGCTAGCGGCCACGAGCCACTTCTGCGGCTGCCCAGAGAAGCAAAGGTCACCAGTCCCAAGTCGTCCCCCTCTCCGCCCCCCAGGAGGGGCGAGAGGGAGCCGCAGCTGATGTCAGAAATACACTTTCGGGAAATGGCCTCTAAATCCTGGCTGAATTTTTTAACCTTCCTCTGTGGATCAGCAATAGGATTTCTTTTATGTTCTCAGCTATTTAGTATTTTGTTGGGAGAAAAGGTTGACACCCAGCCTAATGTTCTTCATAATGATCCTCATGCAAGGCATTCAGATGATAATGGACAGAATCATCTAGAAGGACAAATGAACTTCAATGCAGATTCTAGCCAACATAAAGATGAGAACACAGACATTGCTGAAAACCTCTATCAGAAAGTTAGAATTCTTTGCTGGGTTATGACCGGCCCTCAAAACCTAGAGAAAAAGGCCAAACACGTCAAAGCTACTTGGGCCCAGCGTTGTAACAAAGTGTTGTTTATGAGTTCAGAAGAAAATAAAGACTTCCCTGCTGTGGGACTGAAAACCAAAGAAGGCAGAGATCAACTATACTGGAAAACAATTAAAGCTTTTCAGTATGTTCATGAACATTATTTAGAAGATGCTGATTGGTTTTTGAAAGCAGATGATGACACGTATGTCATACTAGACAATTTGAGGTGGCTTCTTTCAAAATACGACCCTGAAGAACCCATTTACTTTGGGAGAAGATTTAAGCCTTATGTAAAGCAGGGCTACATGAGTGGAGGAGCAGGATATGTACTAAGCAAAGAAGCCTTGAAAAGATTTGTTGATGCATTTAAAACAGACAAGTGTACACATAGTTCCTCCATTGAAGACTTAGCACTGGGGAGATGCATGGAAATTATGAATGTAGAAGCAGGAGATTCCAGAGATACCATTGGAAAAGAAACTTTTCATCCCTTTGTGCCAGAACACCATTTAATTAAAGGTTATCTACCTAGAACGTTTTGGTACTGGAATTACAACTATTATCCTCCTGTAGAGGGTCCTGGTTGCTGCTCTGATCTTGCAGTTTCTTTTCACTATGTTGATTCTACAACCATGTATGAGTTAGAATACCTCGTTTATCATCTTCGTCCATATGGTTATTTATACAGATATCAACCTACCTTACCTGAACGTATACTAAAGGAAATTAGTCAAGCAAACAAAAATGAAGATACAAAAGTGAAGTTAGGAAATCCTTGAAAGAAAATCATGAATGAACAAAGGTAATATGTCTAGCACTGCACTGAAAAAGGACTTCTGCATTTCTGACATAGAACACTGGAATCCCAGTGAGGAATTCTAAGTGAACATTCCTTATAGAAACCTTTCACATGAATGACTATAAACTGAAGCTTTAAATGAGCTGTGAAGTGTGTTAAAATGTGTTTTGATACAGTAatatataaatatgtctatatatatGAGGAACTTGTGTTTTTTAAATGGTGGCCAGGTAGAGGAACTAGAAAAGAGATTTTGTTGCCTGTTTTCTGACCATCTGTGTTATTGTCACTGAGAAACTAAAATAGTAAATTTACTAAAACTACACTGCACCATGTTAGTAATAAACAGATCTGCCTTAAAGAAAAGAAAATTTTAGAAAGAAATATTGTTGCTCAGTGTTGTTAATATAGCTCAAGAATTGAGTTTATATTTGCAGTATGCTATAAATGATACCCCCCTACCACACCCACACACACAGTTTTTGTCTAATGAAAATGTTGCTGTGATTATTTATAATTGGTAGTATTTCTTCCAGAAGAAGCTAAAATAAGACTGGCACTTACCCTGAAGTGCATTAATAAAACCACACTTTAAAATTATCATGGGCCTTGACTATATTATATACTTGATTCTAATTAGTCATCTTTTACGCAATCTCTGTTGTCTCTTTTCTAAATGTGTTTAGCCACTCTTGAATACCATTCTCCACTATTAACATTAATTTACTCAAACCGTTCATAGCATTCTGTAAACATGTATTTTACATATTTGTTCCCAAATTTGCCCATTGTTCATTATGGGTAACTAATAATAAATTTAATGCTGTTTCAGGATGCTTTTCTTATAACAGTGCCACTCTCAGGAATTACTAAGTGACATTTTAAATTGATATTTTAAACTCTTTCCAACTACATAGTTATGGTTTATTTCATTCTCATCCTGTTGGGATGAGAACTTGTTTGTGCCTTTCATAACTTGTTTAAAGCAGAGTTTTAAAATTAGTTTATAGGATCTGAGGTGGCTATTAGTTACAGTGGCAAGATTATTTAGAAAGCAAGATTTTGATGAGAATTAAAAACAATAGAAAATGTAGAGTGCTTAAACAAAAATGTTATATTTTGAAAGAGTAGATACTTAATTTATAAATAACAGTCTGAAGGTTGGTGCTATTTTGGGATAATTGTTTTGCTAATGGATAATTCTAACAATGCAGAATACCTAGTCAAGACTGTCATCAAAAACATTCACAAATGTTTCATTCTATTTTTAGTGACTCTGTTTAAAGAGTTTCTGAAAGGAAAGAAATTTTTTATTTTTATTATCTTTAGCAGTACTGAGTGTCATAGCAGAATATTTTACAGACTTTCTATGAGATTATTTTTATGGTACAAAGTATTTACATTTCCCTCATGTTTATCATTATGCCAATTTTACATGGCAGTCATGCCACTGACTCTGCTATTTAGCTAAGTAAtttcttttttcggagactgtctcactctgtctcccaggctggactgcagtggtgcgattctcctgcctcagcctcccgagtagcggggattacaggcacgcgctgccacgccccgccagttttcatatttttagtagagacagggttttgccgtgttggccaggctggtcttgaactcctgacctcaggtgatccacccaccttggcatcccaaagtgctgggattacgagcgtgagtcacagcacccggcTAAGTAATTTCTATTTATTGTGCCAAAACATGTCAAAATCATGACCTCTTTGAATGGTATATTTGAGAGGATGTTCATTTCATTGGTTAACCATGGACTACTCTGTCCACGTAGTGAAAACATGCACCAGTTTTTACCTATTATCATGGTAGTATCATCTGCCAAAATTTCAAGGCATTCATTTTATTCTTTGAACAACTCTTCACCATGGTGTGGACATGAATTTTCATATGTGTTACTTGACTAGAAGTATAAATGGTTTACTATAGATATCCAAAAACCTTGAGATTTGCTCATAGGAAATGAATATTGTGATGAATCCTgggctctagagtcagacttgcttgggtttaaattcttgctctaacacttactgtttttgtaaccttgagcaattttaatctctctgtgtctcaatttcctcatcttttaattagggatgataatactacctacctcacaggatttttatgaggattaaataaatgtaaggtttttagaacattgatagggagcaataaatagaagattgtattattattCTGTTACCTTGGAGTGTAAGTACTGCATTTAAGTGAATGAAAAATTTGCTTTGACCAGATACTGAAGGAAATAagtaatagctagtatttatccaatgccaactgtatgctaggtactgtgcttagataatctgtgtataatagtgttaatcctcaaaatttgggtgttatacccctattatagataaggaaactgaggctcagagacaaagtaactttgtcactgtcacaaagctagtaagtaacagaggtaggatttatattcaAAACCCTGTGTGTTCATTGGAACCGTATCAGGCTTGGGGCTATTCATGTAGCATTATTTCCATTTTTATGTATATGATATATGACGTCTGATGCATTGGCCAGTAATAGTCAAATTAACCCAGCCAAATTGTCAcagtgattcttaaactgtggttctcacacttgcccaggatgttgttaaatgcagatctgaagaccccaatctcagaaattcaaatttaagcatggggcccaagagtatgcattcttaccagataccttgggcagtgactgtcaaaagtctggtcccaacaaacagcattaacgtcacctgggaacttgttggaaatgcagcctctctcggggcctcatctcagatcagatctactaaatcagatactctaggggcaggggcaggggcaggggctagcagttgtgtttaagcaaactctgcaggtgtctttcttatcctagtttgagaaccaatacccaacaacctacgtgattttggtgcaagtagtgtttgaaacacactgAAGATTACTGCCCAATTACTAAGACATTTTTCAAAAAGCATGTTTTAAATCAGTGTAGTCCAGGATCACACTATATTAAATATAAAGATAACTTAAAGGATCATTGGATCATTCATTTTGGCCAAATTTTTAGCTTCTCCAAAGTGACTAACATCAGGGCCTACAATAAAATCTGTAATTCTCCAAGTTTAGTAATTTTATATTGAGGCAGGAAGGGCTCATTAAGTACTAATAAGTACATAATTTATTAAAAACATACATAAGTGTCATCAAAAAGGTCCACAATTGTTAGTAAAAAAAATTAAATTGAAGTAGTAAATGCTGTTTTATAACATACATTTTTCTGCTAATTCATTCTGTTTTGTGTGACCTAATAAAGCAAAAGAAAAATAAAAAAGCAATTCTCCAAGTACTTCATAGAGCACATAAAACCAGATTTCATGATGATGATGTATTCACTATCTTTTAGATTAAGATCTTTGTTATTTGGTAAATGATTTCAGTATGGTTTTAAAACATAAGGCTTTTGATGTCTTATGTTCTCTAATAATGGTATGCTTGTATTTTCTAGTGGGAAGTTCATAGATAAAGCAGATTTTTGTCCCAGTTTGCTTTCAAATATAAATTTCAGAGGGCTTTTTCTTACTGTAATGAGGTATGAAAATAAATCATTGATCAGCTCTTAATATTTTTTGAATACAGAATTGGATTTGAGCAGTAAATTTGCTAACTGGTTATTTTCACAATTTTCTTGAATATTAATTTTTCACTTCTTTGAGACTGTCAAACTATAGTTACTACCAGGTTGATGCACTGTACTTGAAAGAATCCCTTGATTAAATTACATCTAGCATTTTATTTGCCATTTCAATTTTCAGTTCATTAGACTATAATTCTTTGACAGTTTCTGCCTGGTGTTTATTGCCCTTCTTTGTTTGCTTTATTACTAACTTCCATTTTCTAGTTACTCTTAAATGCTGCCTTCACAAGGTTAATTTGGCTGTTAATAGTGATTAGAATTTTTATCACTTAATTGATAATTTTAAGCCTACTAACTAGGGTTCCCTATGAAATTGAAAGTAAAAGTCTAAGAATAATGCCTGCTGGCTCTCGAGATACTTGCCCTACTTAAAAATCTATAATTTAAAATTAATTCTATGTCTACAATTATTAAAGGAAGTAAAGTTATTTGGGTTCTTCCACTCACCCTTTTCTCAAAAACAACAACAAAAAACAAAACTCATTTTATTTTTCTACTTTATAGTAGGCCTGACAGAAACATAGTGAAGCAATCTGGGAGGCAACCTGTGGTAGATTTTATGCTAAATGTTAATGTAACCTCTGTTGATTTTTTAAAAATGTGTTTATATATAAGATTTGAAATAAAAACTTTAATACAGGCTAGAATAAGGAATTTTACAAATTCTCTTTAGAGCAACCAACATTAAAGTTTTAGAGTTGAATTTTGCTCTATTTCAACTCCCTTACCTCTCTAGTTTTCAGTTTATATTAAGTTTTAATAACTTTGCGGGGCCCTGCAAATTAATAATCTACATGAAGTATATTATTAGAGGGAAACTAATCTTACTGCTAAGCAGTGTGTTGTACTACATAGTGAATGTTCGTGTTTTGGAATTTAAAAATTATTTAAGGTAATGGTGTTACGAATGGTTTAAAAATGTCTGGTGACTTGCTTATTTTTAAGTGATCACCATTAAGTCAGAAAAATGTATTTTTAAATGTTTCTTGAAGTGCCTTTTGAACATTTTTAAACAGCGGATTTAAATAATGCATAAAATAAATTGCCATGTTCAAA

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