Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name SCAMP1P2
Plot displaying the genomic locations of a retrocopy (in chr5) and its respective parental gene (in chr5). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr5:63023197-63023362  UCSC
Coordinates (T2T) chr5:63842848-63843013  UCSC
Coordinates (hg19) chr5:62319024-62319189  UCSC
Strand -
Parental Sequence NM_001290229.2
Parental seq. overlap 134 bp
Parental seq. overlap (%) 2.2%
Genomic Region Intergenic
Retrocopy Summary SCAMP1P2, located on chr5:63023197-63023362, is a retrocopy of the parental gene SCAMP1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SCAMP1
Full Name secretory carrier membrane protein 1
Also known as SCAMP|SCAMP37
Coordinate chr5:78360530-78480739
Strand +
Gene summary This gene product belongs to the SCAMP family of proteins, which are secretory carrier membrane proteins. They function as carriers to the cell surface in post-golgi recycling pathways. Different family members are highly related products of distinct genes, and are usually expressed together. These findings suggest that these protein family members may function at the same site during vesicular transport rather than in separate pathways. A pseudogene of this gene has been defined on chromosome 1. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Mar 2014]

Homology

Species Scientific Name Retrocopy
Bonobo Pan paniscus SCAMP1P2
Gorilla Gorilla gorilla SCAMP1P2
Mouse lemur Microcebus murinus SCAMP1P1
Chimpanzee Pan troglodytes Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SCAMP1P2
TCCAGGCTGCAGAAATTCATAACTGAGGCAATTGTGATTGGACTTCATTCCTTACTGGTTGCCATAAAAGTACTTCTGTTAGAATCATATTGATAATCAGAGCAGCTTGTTTCACAGTGTCTGCAGTCATTGCACTAGCTATGTCTCAAAAGATACATTGACTATT
>NM_001290229.2
GCCTCGTCTCTCTCTCTGCGCCTGGGTCGGGTGGGTGACGCCGAGAGCCAGAGAGATGTCGGATTTCGACAGTAACCCGTTTGCCGACCCGGATCTCAACAATCCCTTCAAGCCTCCACCAGGCGGTGTGAAGATGCCTAATGTACCCAATACACAACCAGCAATAATGAAACCAACAGAGGAACATCCAGCTTATACACAGATTGCAAAGGAACATGCATTGGCCCAAGCTGAACTTCTTAAGCGCCAGGAAGAACTAGAAAGAAAAGCCGCAGAATTAGATCGTCGGGAACGAGAAATGCAAAACCTCAGTCAACATGGTAGAAAAAATAATTGGCCACCTCTTCCTAGCAATTTTCCTGTCGGACCTTGTTTCTATCAGGATTTTTCTGTAGACATTCCTGTAGAATTCCAAAAGACAGTAAAGCTTATGTACTACTTGTGGATGTTCCATGCAGTAACACTGTTTCTAAATATCTTCGGATGCTTGGCTTGGTTTTGTGTTGATTCTGCAAGAGCGGTTGATTTTGGATTGAGTATCCTGTGGTTCTTGCTTTTTACTCCTTGTTCATTTGTCTGTTGGTACAGACCACTTTATGGAGCTTTCAGGAGTGACAGTTCATTTAGATTCTTTGTATTCTTCTTCGTCTATATTTGTCAGTTTGCTGTACATGTACTCCAAGCTGCAGGATTTCATAACTGGGGCAATTGTGGTTGGATTTCATCCCTTACTGGTCTCAACCAAAATATTCCTGTTGGAATCATGATGATAATCATAGCAGCACTTTTCACAGCATCAGCAGTCATCTCACTAGTTATGTTCAAAAAAGTACATGGACTATATCGCACAACAGGTGCTAGTTTTGAGAAGGCCCAACAGGAGTTTGCAACAGGTGTGATGTCCAACAAAACTGTCCAGACCGCAGCTGCAAATGCAGCTTCAACTGCAGCATCTAGTGCAGCTCAGAATGCTTTCAAGGGTAACCAGATTTAAGAATCTTCAAACAATACACTGTTACCTTTTGACTGTACCTTTTTCTCCAGTTACTGTATTCTACAAATATTTTTATGTTCAAAACACACAGTACAGACAGCATGGATATTTCCTGTTCACTTGTGCATGGGCTAAAACCAGGAAAACTTCCTTGTCTTATTACTTTACCTAATAGTTTCTTAATATTTCAGTGCCCCTTGCAGAAAAAATATTACATGCTAAATAAATATTCTCCATATTTTTGGGGGATGACATTCAGTGAATTATTTCAGTGGTGACCCACTGAAAATTAATAATGGTACTTATGATTAAAAACGCATTTAATACTAACTGCAGTAGTTCTTTCAAGAATCTTTAGAGATAAGGATTGCACATTGGAAAAGTAAACCATGTTTCATTCCTTTTTCCCTATTTATATTGAAAGAAATAGGCCAGCAGAGACTTAGGGATTTTAAATTGGCTTGCTTTTTAGCTGTTTCAGTCACCAGTGAAGAGCCTATGTGCATTTTGTAGTAGATAATGTAAAATTTGTCATCTTTTTCTTTTCTTTTTTTTAGAATAGCTGATATTTTGATAACAATCTCTAATTTGCATGGGCACCACATTTCTTATATTAAAAGAATTAGTGTTTTGGCTTCTGTACTGCTTATGGTTGTAGGATTCAGGGGTTAATGGAATCACAGAAATGATATTCTGCAAGAATTTCTTTTAAATAAAAAGTTTGGGGGTGCAATATAAGAAGTTTATATAATATGCAGTACATTATCCAAAAGAGAAGGTAGTTAATGCAGTAGAAAGTAGTGGTAATAATTCCTTTTTAAAAAAATTTCGGTAGTCATATAGTAACATTTTGCTATATGAAAACTTTGGTATATTCTGTGGTTACAACTAAGATTGTGTCTGGCAGCTCTTTTTTGGGGATGTGTGTGTGTGATTTTTAACAGAGGTATTAAAGGCTAGCCTAACTGTTGTCTAAAAAGATTGTACAGTATTTAAGGGATTTTCCTTTTAGCTTTTCATCTCCAGTGGCATTAAACATAAAAAGACCCTGGCATTTTTTCACATACTTGAATCCCTAAATGCACCTGTCTTTCACTTTTTGAGACAGACTGAATATATCTAAAATTTCCAGCAATAAAAAAAAAAGCATTTAACTTGCACCAAGCAAGAAAATATAAATACAGTTAACTGCATTAAGATAATCACGTTAAAATTGTTACTATGCAGCACAGAACTTCATTCTTATAGTATTCTTGGGTTCAACCTTTGAATCAATTTTACCACTGATTAAATAAATGACTCAAAGACATCTGTAAGTCATGCTGCTGTGTTTTGAAAGTCTTTAACTAAATTAAGATTGCAGAATGATAGTGATTATTCAATTAGATTTTAAGTAAGGATTGTGATATTAGAGGCTGGAAATCCTTATTTTTTAAAAAATCAGATAGGCATAAATAGTTAAATCACTTTCATTCTCCCCAAACCTGTAGTTACAGAAAAAGTTTTATGCTAGAGGTGGGATGCCAAGTTTTCACTATCCATGAAGCAGCGCTGCATGTCACTAGGTAACACAGATCCATCCAGATGGTGTTTACATTTGATTTATTTGGGATCTTATTGACATCAGGTATACTTGGAAGACATTTCTTTTATTCTTCAGCGTATGAATTTAAAGCTATTTTTTGTAAATATTTCTAATCAGCGATAATTTCTACCTATGTTCTCAACCAACTTAGCCAGTTTGTTTTTCAGAGCCTGTAGTCTTATTGGAAATCTATTTTATCAGTGTGCTTTATTGAGTGTGGATTTTGCATACATTCAAAACATTAACCACAAAATACAGCAAGTGCACCTATATTCACCATTAACTTATATCCCAAGTCCATTTTTTCCTGTACACTACAAACAAAAGATATATTAGAGACTTTTGAAAAATGCTGAAATACTTTGCTTCAGAATTGGAATGTTTATATTATGTAGAAATCTTCAAAGGTAGCATTATTAAATAGCAAAGAATAATTAGAACCCACATATCTTTTTTTGTGTGGATGGGGAAAATGTTTTAAAATCCAGTTATTTAATATGAGTTTGAGAGAGAAAATTGTTTTTTAAAAATATATGTGCATTGAAATGATGGCAATGCTTATAGTATGATCAAGTATGAAAGGAACTTTAAATTCTTATATTTACTTTTCTCTCAGTAAATTGTTAAATTTTCACTCAGCAAAAGATTGGCATTTGTTAAGTGTTCTATATTTAGTACTAAAATCACAGTCATGAAATCATAGTCATAAAATGGTCTTCACACAGCAGTCATCCGTGTCATTTATCATTTTGTAATATTAAATTATGGCAATTTTATTTCAAACTAAAGTTTGAACACCGGAAAGTCATTACTCAGTGATTTGTAATTTGGGACTTGGATTATTTATCTAGAGATGTTTGTATATTTTGTCAGTAACTAATACTGCGCTGCCATCATGGTGACTGTCATGGTTCTACAGAAATGCCCTCCATGTGTCCCTCTAATGTTGCATGTTTCAGTGGGTTGGAAGTTTTGTATATTTATTGTATTAACACAGAGTGTCATAAAATAAAATGCTGTTTACTGGATGTTTGTTTGTATAATTTTGAACACTATAATAGCAATTCAGAGACAGACATTGTTAAAGGTTTGATGTATATAGAAATTCCATGTTTGATTTTTTAAAATATGTGTATAAGTCTGTCATGTGCTAAACAAAATAATATGAAAGACCTAGTTAAAAATTCTAACCAATGTAAAATGACCATTTTTCTGTTGCATTAGACCTTTACAGGTAATGGAACATGAGCTTCACCCATATTAAATATTTTGGCCCCTTTAAGGTCAAAATACAGATCATCTAGAAGTTAGATTCAAAATGGAAAACCTATTCATGGCTCAGATTTTTCATTGTGGGTTAAAAATGGGTGTCTCTGTACTAGTATTGTATTTATTCAATTGAACTTGTATTCTGATTTCTATCCTTGCTACCTATTGCTGTTTTATGTACTGATGAAAGTACCTATTTGTGTATATTGGATTTTTCACTTGGTTAGCTAAAGAAGATGTAAAAATATCTAAAATAATGTTCATGGTGAATCTTATTTTGAGAAATACATGTTAAAAAAGGAACAGTATTCTTTATTTTCTGGGTGTTATATTTAAAAAAGCAAGTTTGGATTTTTACACCTAATTTACTAGGAAAATATTTTATTCTGTAATTCATGTTAAGATTATGTATGGTTTGCATTTTAAGGGGATTTATGTTAGGTTAATTAGTTGTTTCTGTAAATCATTTGTAATAGCATAGTGCTTTTTACTCATTGCTGTATCTTTTTCTGAAAACACTGTTGTTAACATCTAATTCAGTATCCTTATTGGTACAAATCTGTGTTTGGCATGACTGTTTATATACAGAATTTGTTACATTTTGAGCATTTTTTCCCCTGCTTATGTATACCTTAGAGTTACCATGGCTGTCATATACCATTTCACTATATCTCCTTTCAGTTTTTCCTTAAGGAAAATGTTTAGAGGAATTTGTTCATTTCATGTGATTAAGCCCTTTAGAGATGAAATAAGATTGGTTAATTTTAAAAAAATTGAGGATGGTTAAAAAATAGAAAACACCTTACTTTGATACATTTTAAAGTACAATAGTATACATTTATTTAGAGTAGACTAATGTGTTTAAAACATGAGTTGTTTTAAATACTTTTTTATTGAGCTAAAAAGTTTTATCTCACATATTAAGTATTACAGAAAGTGAAGTATTTTGGCTAGAATTTTAGGGCATATTTTATAAAGCAGCATGCCTGTAATATTGGTGGGTATTTTTAAACTTTAGGACTTTATCACAGTATGTAGAGAGCTAGAAATAAATCTAGAAACTTTCTAAGCCAGGTATTGCCACTAACCTGTCTTATATAAGCAGATACCTCTTATTTGAAGATTGTAGGAAAATAGAGAAAGACTGTTCTCCAGTTTTCTCACCCCCGCTGTGGGTTTTATATTTACAATTTAACTTTGGGGTTTGGGTAAGACAAACATTTAATGTATAGGATTTTggccaggtgtggtggctcacgcctgtaatcccagcactttgggaggccaaggtgggcggatcacgaggtcaggagatcgaaaccatcctggctaacatggtgaaaccccatctctactaaaaatacaaaaaaaaaattagctgagcatggtggcgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatgacgtgaacctgggaggcggagcttgcagtgagccgagatctctccactgcactccagcctgggcgacagagcgagactccatctcaagaaaaaaaaaaaagaaTTTTCATTAGTGCTGGCCGTGTTTCAAATGGCAAGGGAACATGGGAACTATCATGTGGCAATGTAGTGAGTGTTAAACTTTGTGTTTGTCCAAATCCTGATTTATTTTTCAGTTCATATCTTTCTGGGCTTGACATGGCTGATGGTGTAGCTGAAACCCTCCTAACACTAAAAGCCATTTAATCTTTTCTGTAATAGGAGCAGAAAATAGTTAATCATCCACCTAGTAATATAAGATTACTGTGAATATTATCTTCTATACATTAAAACAGTTCTAGTTTGTAGAATAATACCATACAAGTTTTATTTTTAAATTCTAGTTATTTTCAGTGCTTACTTAAATGTAATTCTAGAATTCCTCCACAACTTTTAATATTTTGTATGCCAGTGATTCTCAAGATAAATCATGATTGTAGTAGTTGTTACTGTTGGCAGTTTGTAGTAGTATTCAGGTATTTTGGGGATGGGGGAAAACACCAAAAATCAGTGTCTTTTATCTGGTGATCACTGTGGTATCTACAGTATTCTAGTCTCCTGCACAAAAACTGAACCCACTGGGCCTATGCATCCCTCACACtttttttctagtataaaagcaatacataatgtgttgtagaacaattaaaaattcagaaagtgatacatgagaaaataaaaataaatccttaattctgtca

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