Retrocopy Name | TBL1XR1P1 |
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Species | Homo sapiens | |
Coordinates (hg38) | chr6:127658608-127659906 UCSC | |
Coordinates (T2T) | chr6:128847539-128848837 UCSC | |
Coordinates (hg19) | chr6:127979753-127981051 UCSC | |
Strand | - | |
Parental Sequence | NM_001374327.1 | |
Parental seq. overlap | 834 bp | |
Parental seq. overlap (%) | 10.3% | |
Genomic Region |
Intergenic |
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Retrocopy Summary | TBL1XR1P1, located on chr6:127658608-127659906, is a retrocopy of the parental gene TBL1XR1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
Gene Name | TBL1XR1 |
Full Name | TBL1X/Y related 1 |
Also known as | C21|DC42|IRA1|MRD41|TBLR1 |
Coordinate | chr3:177019344-177197482 |
Strand | - |
Gene summary | This gene is a member of the WD40 repeat-containing gene family and shares sequence similarity with transducin (beta)-like 1X-linked (TBL1X). The protein encoded by this gene is thought to be a component of both nuclear receptor corepressor (N-CoR) and histone deacetylase 3 (HDAC 3) complexes, and is required for transcriptional activation by a variety of transcription factors. Mutations in these gene have been associated with some autism spectrum disorders, and one finding suggests that haploinsufficiency of this gene may be a cause of intellectual disability with dysmorphism. Mutations in this gene as well as recurrent translocations involving this gene have also been observed in some tumors. [provided by RefSeq, Mar 2016] |
Species | Scientific Name | Retrocopy | |
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Chimpanzee | Pan troglodytes | TBL1XR1P1 |
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Bonobo | Pan paniscus | TBL1XR1P1 |
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Gorilla | Gorilla gorilla | TBL1XR1P1 |
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Orangutan | Pongo abelii | Without Homology |
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Gibbon | Nomascus leucogenys | Without Homology |
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Green monkey | Chlorocebus sabaeus | Without Homology |
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Crab-eating macaque | Macaca fascicularis | Without Homology |
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Rhesus | Macaca mulatta | Without Homology |
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Baboon | Papio anubis | Without Homology |
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Golden snub-nosed monkey | Rhinopithecus roxellana | Without Homology |
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Marmoset | Callithrix jacchus | Without Homology |
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Mouse lemur | Microcebus murinus | Without Homology |
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Mouse | Mus musculus | Without Homology |
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Rat | Rattus norvegicus | Without Homology |
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Chinese hamster | Cricetulus griseus | Without Homology |
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Rabbit | Oryctolagus cuniculus | Without Homology |
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Pig | Sus scrofa | Without Homology |
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Cow | Bos taurus | Without Homology |
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Sheep | Ovis aries | Without Homology |
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Dolphin | Tursiops truncatus | Without Homology |
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Horse | Equus caballus | Without Homology |
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Dog | Canis familiaris | Without Homology |
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Panda | Ailuropoda melanoleuca | Without Homology |
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Cat | Felis catus | Without Homology |
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Pale spear-nosed bat | Phyllostomus discolor | Without Homology |
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Velvety free-tailed bat | Molossus molossus | Without Homology |
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Greater mouse-eared bat | Myotis myotis | Without Homology |
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Kuhl's pipistrelle | Pipistrellus kuhlii | Without Homology |
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Greater horseshoe bat | Rhinolophus ferrumequinum | Without Homology |
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Egyptian rousette | Rousettus aegyptiacus | Without Homology |
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Sloth | Choloepus didactylus | Without Homology |
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Tasmanian Devil | Sarcophilus harrisii | Without Homology |
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Opossum | Monodelphis domestica | Without Homology |
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Platypus | Ornithorhynchus anatinus | Without Homology |
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Chicken | Gallus gallus | Without Homology |
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Turkey | Meleagris gallopavo | Without Homology |
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Zebra Finch | Taeniopygia guttata | Without Homology |
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Budgerigar | Melopsittacus undulatus | Without Homology |
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Painted Turtle | Chrysemys picta | Without Homology |
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Lizard | Anolis Carolinensis | Without Homology |
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Frog | Xenopus tropicalis | Without Homology |
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Zebrafish | Danio rerio | Without Homology |
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Drosophila | Drosophila melanogaster | Without Homology |
>TBL1XR1P1 |
CAGAAAGAAATATATACATACAATGTATATAAACAAAATTGCACCCTGAAGATGACAGTTTTGTCACAGCTTGTGAATTCTGTTCACCAAGTGCTGGAATCTAATCTACTGTGCCCCTAAAATAGCATTTAGAAGTTTTGGATATGAAAAACAGAAGAGAGAAAAATACACATTATAAAAGCAGAACATACATGTACCAGTTTTTGGATACCACCTGACAGCCTCGTTTCTCCCCTTTGAATCCGCAGACACCAAGGATTATATTCTTTTTTCCCTTCAGTAGTGAGCAGTTTGTATGTACAGAGAAAATGGACACAAAAACTTGCAGTGGTAGTTTGTTCTTGCTTTAAAATTTTGTTTTTGGTTTAGATTATGGGTGCATGAAGTAAGGGAATGAATCAGTTTCTTGTTTATATTTTTTCAGCTTTTAAACAACAAAAAATTCTTTAAAATATTTTAATGCATTCTTTTGAAGAGGTAGATGTTTGGTACATTTTATGGCTCCCAGAGCACATATTCAATTGGTGCATGTTGTGGAAGGGAGAATTGGAAATTAAATGAAAACATGACTTTGGTCATGTCAGTCTGTAAGACACATCCATAAAAGGTGTATTAAGCCTGTGTACAGTGTAGCTTTCAGTCCTGATGGCCGGTATCTGGCCAGCAATTCTTTTGACAAATGTGTACACATCTGGAACACACAGACAGGTGCTCTAGTTCACACTGTAGGGGAACAGATGGAATTTTTGAAGTTTGCTGGAATGCCGCAGGAGACAAAGTTGGAGCCAGTGCATCAGATGGTTCAGTTTGTGTATTAGACTTTCGGAAATAGCGCTACTAGTTGGAAGCCATGGACCAACTATGAATGTGTACATAGCCAAAATGACTGTCCCTGACCCACGTACTGCTATAGTCCCACTTGAACCATGGCCAGTCGACTACAGCCAAATCTAAAAGAAATATAg |
>NM_001374327.1 |
GAACCGTTTGGCTCTTTCCCTTAGTAACAGCTTTTACCTTCTGCCTCAATTCCTCTCCCCGCTCGCGCCCTTCCCCCGCGCGCCGCCTCCCCCCGCCGCCGGCCGCGTGCGCCCCCGCCCCTCCCCCCGCGGCGGGAGCACCTCCGCTCGCCACCTGGGGACCCGCGCCGCGCTCCCCGCCCCCGCCCGCCCGGCGCCCATCCCCCGCGCCCTCCGCTCGCTGGGGTTATAATTGCCTCTCACCCCCCGGAGGGGTTATTTTGGGGGTGGTTggaggcggtggcggcggcggcgAGGAGGGGAATTTCCTTGTGCCTCCATTCCCGGGAGGGGGGAGCGGCGTTGGAGGCCACCGTTTCCAGGGTTATATCCTGTGTTGTGACCTCATGGTTTAAGTGGGAATAAAGATGAGTATAAGCAGTGATGAGGTCAACTTCTTGGTATATAGATACTTGCAAGAGTCAGGATTTTCTCATTCAGCATTTACCTTTGGTATAGAAAGCCATATCAGTCAGTCCAATATAAATGGTGCCCTCGTCCCACCCGCTGCATTGATTTCTATCATCCAGAAAGGTCTACAGTATGTAGAAGCAGAAGTTAGTATTAATGAGGATGGTACCTTGTTTGATGGTCGACCAATAGAGTCTCTGTCCCTGATAGATGCCGTAATGCCTGATGTAGTACAAACAAGACAACAAGCTTATAGAGATAAGCTTgcacagcaacaggcagcagctgctgcagctgccgcagctgcagccagcCAACAAGGATCTGCAAAAAATGGAGAAAACACAGCAAATGGGGAGGAGAATGGAGCACATACTATAGCAAATAATCATACTGATATGATGGAAGTGGATGGGGATGTTGAAATCCCTCCTAATAAAGCTGTTGTGTTGCGGGGCCATGAATCTGAAGTTTTTATCTGTGCCTGGAACCCTGTTAGTGATCTCCTAGCATCAGGGTCTGGAGACTCAACAGCAAGAATATGGAATCTTAGTGAGAACAGCACCAGTGGCTCTACACAGTTAGTACTTAGACATTGTATACGAGAAGGAGGGCAAGATGTTCCAAGCAACAAGGATGTCACATCTCTAGATTGGAATAGTGAAGGTACACTTCTAGCAACTGGTTCCTATGATGGGTTTGCCAGAATATGGACTAAAGATGGTAACCTTGCTAGCACCTTAGGGCAGCATAAAGGCCCTATATTTGCATTAAAATGGAATAAGAAAGGAAATTTCATCCTAAGTGCTGGAGTAGACAAGACTACAATTATTTGGGACGCACATACTGGTGAAGCCAAGCAACAGTTTCCTTTTCATTCAGCACCAGCATTGGATGTTGATTGGCAGAGCAACAACACCTTTGCTTCTTGTAGTACAGATATGTGCATTCATGTCTGTAAATTAGGACAAGACAGACCTATTAAAACATTCCAAGGACATACGAATGAAGTAAATGCTATCAAATGGGACCCAACTGGCAATCTCTTGGCCTCCTGTTCTGACGACATGACTTTAAAGATATGGAGTATGAAACAAGACAATTGTGTCCATGATTTGCAAGCACATAATAAAGAAATTTATACTATCAAATGGAGTCCAACAGGACCAGGGACTAATAATCCAAATGCCAACCTTATGTTAGCAAGTGCATCCTTTGATTCTACTGTTAGGTTATGGGATGTAGACCGAGGGATATGCATCCATACCTTGACAAAACACCAAGAGCCTGTGTACAGTGTAGCTTTCAGTCCTGATGGCAGGTATCTGGCAAGTGGTTCTTTTGACAAATGTGTACACATCTGGAACACGCAGACAGGTGCTCTAGTTCACAGCTATAGGGGAACAGGTGGAATATTTGAAGTTTGCTGGAATGCAGCAGGAGACAAAGTTGGAGCCAGTGCATCAGATGGTTCAGTTTGTGTATTAGACCTTCGGAAATAGCGCTACTAGTTGGAAGCCATGGACCGACTATGAATGTGTACATAGCCAAAATGACTGTCCCTGACCCATGTACTGCTATAGTCCCACTTGAACCATGGCCAGTCCACTACAGCCAAATCTAAAAGAAATATATACATACAGTGTATATAAACAAAATTGCACCCTGAAGATGACAGAGTTTTGTCACAGCTTGTGAATTCTGTTCACCAAGTGCTGGAATCTAATCTGCTGTGCCCCTAAAATAGCATTTAGAAGTTTTGGATATGAAAAACAGAAGAGAGAAAAATATACATTATAAAAGCAGAACATACATGTACCAGTTTTTGGATACTAAATGACAGCCTTGTTTCTCCCCTTTGAATCAGCAGACACCATGGATTATATTCTTTTTTTCCCTTCAGTAGTGAGCAGTTTGTATGTACAGAGAAAATGGACTTACAAAAACTTGCAGCAGTAGTTTGTTCTTGCTTTAAAATTTCGTTTTTGGTTTAGATTATGGATGCATGAAGTAAGGGAGTGAATCAGTTTCTTGTTTATATTTTTTTCACCTTTTAAACAAAAAATTCTTTAAAATATTTTAATGCATTCTTTTGAAGAGGTAGATGTTTGGTACATTTTATGGCTCCCAGAGCATATATTCAGTTGGTGCATGTTGTGGAAGGGGGAATTGGAAATTAAATGAAAACCTATGACTTTGGTCATGTCAATCTGTAAGACACATCAGTAAAAGGGTATTATGCTCTGTTGGttttgtttttttgttttgctttttttttttttttttcttttttgttttttgGTGATGTGGCTTAAATGCAATAGTTTCTTTTTTGGGACATATTTCTGCCAATTAAAGACTAGAAGGGCACAACTTTTTTTTTAATTACCATAGAGAAGATACATTAAAAAAAATCTTCTGATGTTTTGTAGCCATAACTAAATTATGGTAAAAATGTGCACTATTGTGAAAAGGAGCAACGTAgttttgggttttttgttgtttgtttgttttgctttgttttttAAGAGATTAAAATGTTTCTGGATAAGGATTAGCTTCTCGAAGTGTCCATCATTCTGTGTAGAAGCTTAAATATGTAATGTAACCAAACTCCAGTATTAAAAATCTCTCATGTTGTTTTCTTTATACAAAGCAAGATAACGGCATATAACACTGCCATTACATGGCAAAATGTTTGCTACCTTAGTTTAAAAAACAATCTCAAACAAAAGACTTGCTTCAAGGTGTTTTTAAATAGCAGTGATTCAGAATTTTTTTTAATGAAAGTATAATTGCACTAACCTTCTTCCTGCTGCTCTGATTCTGCATTTGTGGTACTTGTGACTACGTTTTTTCAAATATAGATAGATTTAAGCTGCTAATTTTTTTTTTTTTAGTAATCACTACTATATCATGTCTTTTACTCTGTTTATAATATCAAGTATTTTCTTAAAGATATAGATATTAAACCTTGTGCTCATGCAACTTAGAGTAACATATACAGACAAATGATTGCATGAGGCCATGTTTATATGTGTGACTAATAAGGCTTGTCATGATTAACATAATCCAGGTATGTCATTTCTGAAGAGAATAGTCATCAAATTTATATCTCGAAGATTTTAATTAAGGAATTGCTTATTGTTGAGCTTAGCAAATTAATAACACTATTTCTGTCACTAATTATTTTGAGGCCTTTTAGTACTAAAATTTTAACCTGTGTTCTAAGTAGAAACTGATTTAACCCAAGTAATGCAGCTTTGATTGATTTCAGCATTCGTTGCTTTGCTATTTTTACAAAACAGCATTGATTGAAGCAAGTCTTGGTTTTACTAAGGTAGGGTAGCATTTGCTATTGGTAAAGAGAATAAATACACTTAATTTCACAATACATTGTTATATGTACCCCAGTTGTTGTTAGTGGGGACTATGATACTGTAATAATATTTTTAAAAATTTACATCAAGAGAGGCAGTCATTCACGATGGTTTTGTGCCAGCTCTTTTTAGGGTTTTGGATCACATTAGAGATATTTAGAACATATTACCCTGTGACTTACGTAGGAAACCTAATATGCTGAGTATCTGGCACTTGAATTCCTGCTTTTATTGCTGGAGGTCCACATCTGTGGTTGACCTCTGTTATTGTTTaaaaaaaataaataaaaattaaaaaaaTCTGTGCAATAATTTTAAAATGTGCTCCCAGGAATAGACACAAATGTTTTGAGTATCTTTTAAGCTGCATTTTCCTTTAGTGATGCATTTGTCAATTGCACTGAATTTAAATCTGAAAGTCAGAGGTGATTATTGATAGTACTTTTGTATTTTGATATGGACAGTTTATTCATTTGCATACAGTTATTGACTTTTTCCCAGCTGATTAAAAGATAGTCAAGAAATTCTGCAATATAGCTGCCAAAATAGACAGCTACATTTTTATGATATTGTCATCttttctgttttttttttcttttttttctttAGCTATTTTACTTAAGCATAATAGCCACAATAGGACATATAAAAGATTATAAATACAGAGCTTTATTATCCTGACGTCTTGGGTCTTTTAAGTATATACTTTTCTGAAAGGTATCCATTTTGTAGGCTTGGGTTCttcatgagcatacgattgtttatttttgctgctgttctcaacatcatcattgcctgctgatgtgccacgatgcTGCTCCAATAGACAGCAATAAGATTGTCTCTAATTTGAGCAGTAACATGATTGCAAGAGACCAAGTTTCACAGCTTGTAAAGTTCTGTATTTGGGATTCTTGCTTATTTTTCCGCCTGTGTTTTTCTGAGAACTTATTCCTGATGATCAATTGAATCCAGTAGTTTTTCTATGCTATTTGTTGTTGTATAAGCTACTGTAAGAAACTTATCATAAGGAAAAATAGAAAGGAAAACTTGAATCAATACTCATTGATTAAAATGGAATAAAGAAAGAGCAGCTGCCACTTTTAAACAACATAAAGGAATATCTTTTTTTGTCTCCGTGTAGGAAATCCCATAAGTTCTTATATTTGTTCCAGTTCCCATTTCCTGCCATTGACCAGATAACATCATTGACTTTCAAATGACTTTTAGAAGTGATAACTCTTAATTTCCTAATAGATACTAGATTGTATTGAATTCTGTTTTAATTATTCTCTAGGTAAGTATGTTTTAGGATTAAATACCTTTTACAGATACTGAAAGTGCCTCCTTTTGTGGTGTAAAAAACAAATTATGGTGCAAAAAGTAATCACTAGATTGAAATACATGAAGGTTTTTTGCTTTTTGACATACGAAAATGTCAAGAGAAAGGCCAAAGATTTGTACTTTTTCACTTACAAAGCACTCCTTTTTCCCTTAAACTTCTTTCTGTCAAATTAGATTTAATGAGAGAGTACTATTTTTAAGGAGCTATCTGTTTATGTAGAATGATTTTGTTAAGAGTAATGTAAACTATTATTGAGTAGAGGCCTAAAGAGGACTGTGCATTTTTGCTATTTAAAGGAATCACAAATGATCATACTTAAGTGAGCAAAAATGACAAGTTTTACTAGCTAAGTAGAGAAATAAATCTCAAATGCAGCGCTACAATTTTCATTATCTTAAGTACATTGTACATTTCTACAGAACCTGTGATTATTCTCGCATGATAAGGATGGTACTTGCATATGGTGAATTACTACTGTTGACAGTTTCCGCAGAAATCCTATTTCAGTGGACCAACATTGTGGCATGGCAGCAAATGCCAACATTTTGTGGAATAGCAGCAAATCTACAAGAGACCCTGGTTGGTTTTTCGTTTTGTTTTCTTTGTTTTTTCCCCCTTCTCCTGAATCAGCAGGGATGGAAGGAGGGTAGGGAAGTTATGAATTACTCCTTCCAGTAGTAGCTCTGAAGTGTCACATTTAATATCAGTTTTTTTTAAACATGATTCTAGTTAAATGTAGAAGAGAGAAGAAAGAGGAAGTGTTCACTTTTTTAATACACTGATTTAGAAATTTGATGTCTTATATCAGTAGTTCTGAGGTATTGATAGCTTGCTTTATTTCTGCCTTTACGTTGACAGTGTTGAAGCAGGGTGAATAACTAGGGCATATATTTTTTTTTTTTTTGTAAGCTGTTTCATGATGTTTTCTTTGGAATTTCCGGATAAGTTCAGGAAAACATTCTGCATGTTGTATCTAGTCTGATGTACTTATCCATCTCATTACAAACAAAAACACACAGACTGCATTTGTAGCTCTGTAATCCTTGAATACGGAAGTAAATTTTCTTCTTTCCTGACTTTGACATTGTAGCTATACTGTTTCCATTTTTGTTTTTACAAATCCTTTGGGTCTAATTCTGTGAGCCTACCTATAGCACTGGATTAAAATGTCTGCATCATTTCTTTAGTTATCCAGTTAACTTTAAAACTGTTGTAAAAGTGTAAACCAGCCCATGACAGGTTTTTGTACATGTTAAAGAACTTCATTGTTCAGTTTTCATGATTATTGTGTAAGGAAGACTGATGTAGATGTTCTGTGCTGTCCTGGACCATGTTAATTACACTTACGACGTATTTTAGTTCCACATCACAATGATTTGTCCCCAGTGACCCTTTTATCCTTTCTAGGCACATttcttgttgttgttgttgttgCAGTTCCCCTTTGCATTGTATTGCTTTGACAACTGTAATTTGAATCAGATCTGAAAGAGGTCCAGAATAAAATATATTTTGATATTATGTTGGCTGTGTACATATATAAAACCTTTGATGTCTATGTAGTTTATATAGACTATTTACTAGTCAGGTAAAGAGAGAGGGATGGTATTTCTTGTTTACAGTTTGTTTACATTTTAATTGCTTTTACTTCTCCAGTGTTCTATTGTAGAATAAACCTTTTTTTCCAAGTTAGCCTTCATAACCTATAACACATTCATTCTCTCCCATACTGGTGTTACTGATTAATAACTGCCATCAGAACCCAAACCACTGTTTTTCATAAACGTATTGTTTCCCAAGATATATACTTTAAGCCCATAATAAAATTACAAATTTTACTATTTTTATTACTTCTTGCAGGAGATAAGATTTTTTTAAATGAAGgggttatttactatttttattaaagtataatagagcatctaatcagctaagggattgtaattTTTAATTCTTTTGAAAAATAAATATTGTATTTAAAAGACGTTATTTCACAGAAGCTGAAAAAGAGACCTTAGATAACATTTGTTTGGTTAGCCACACGGTTGAGCACAAAACAATGTGTAGATGTGTTGAAGATTAGGGCAGGAGGCTCAACTTCTCGGTGACCTTTTTTTGCTTCACAACAAGCCAATTATAGTTGAATCATTTTCTCTCTTAGCTAGTTGTTACTACAAACTTTATAAGAAAAACAACTAGACACCTTCTAGTTTTAATTAATACCAACTCCTTTAGAGTTAGAGACTTTTTAAAAAGAATCATTGAGCATAttttcttttttttttttttAAGAATTTACACTCTCTAGGTCTTCTATTTTTCCTGTTTATTTCCTTAAACAGAAATAAATTCAAGCATAGTTTTATGTTTTATTAGAAATAAGCCACTGCAGTTGCTAGAACTGACATGCTTTCATTTTCAAGGGGTTAACTTTTATTGCATGGCATAGATTATTAGTAATATCCTGCATTGTATACTTTTCCAAAAAGGGTTGGACTCCTAAGGATTAGAATCCTTATAAGCTTGAGGGAAAGCTGAAACTAATTTGAACAGTAATAGAAGGGATTATTTTTAATTTCATAGTTAACACTTTACAATGGATTAGATTTATTACCTAGTATAATCCGTAGCAGATCAGATCAAAGTTTACTGTTTTACCAATATATTCATTTGAAAAAATACAGTGGAGGAAAAGACACTTTAGATGGTAGTTTTATGGTGCTTTTCTCTGCTGTACCAAAGTGCTTTGTCATCAATGAAATGTTAACCCTATGCTACTTTTTCTGCATGCTTCTTAAATGTCATCTTAATGCTTAATTGTCCTAACTTGTAATATTTTTGTATTAAATTTTTTTAGGAGTTCCTTGTAATTTCTTTACAATTTAAAATATATTAAACACAAAGTGTTTAGTAAAGTACAGAAGACAATTA 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