Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name DDX6P1
Plot displaying the genomic locations of a retrocopy (in chr6) and its respective parental gene (in chr11). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr6:29327375-29331395  UCSC
Coordinates (T2T) chr6:29202151-29206171  UCSC
Coordinates (hg19) chr6:29295152-29299172  UCSC
Strand -
Parental Sequence XM_005271417.4
Parental seq. overlap 2260 bp
Parental seq. overlap (%) 42.5%
Genomic Region Intergenic
Retrocopy Summary DDX6P1, located on chr6:29327375-29331395, is a retrocopy of the parental gene DDX6. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name DDX6
Full Name DEAD-box helicase 6
Also known as HLR2|IDDILF|P54|RCK|Rck/p54
Coordinate chr11:118747763-118791696
Strand -
Gene summary This gene encodes a member of the DEAD box protein family. The protein is an RNA helicase found in P-bodies and stress granules, and functions in translation suppression and mRNA degradation. It is required for microRNA-induced gene silencing. Multiple alternatively spliced variants, encoding the same protein, have been identified. [provided by RefSeq, Mar 2012]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes DDX6P1
Bonobo Pan paniscus DDX6P1
Gorilla Gorilla gorilla DDX6P1
Orangutan Pongo abelii DDX6P1
Mouse Mus musculus Ddx6P1
Dog Canis familiaris DDX6P1
Egyptian rousette Rousettus aegyptiacus DDX6P1
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>DDX6P1
AAGGTTGATGGGATTAAGGGGATTAGAGTGATTATGGGAGCAGCTAAAGATGAAGGGGCTCAGTTTACTCAGCACTAAATTCTAGAAAGCACTTTGGCCTCTTGCTGTAGAGAGCAGGTTTCTATGGTACCCTTGGTTAGGAAAGGGACACAGAAATCTGGGATGTCCTGTTTGCTCCCACGCTGTCTCATCTAGTACCCCTGGAGGAGGCTTACCAGAGAGAGCAACGAAGCGTCAAAAATTGATAATTCAAGATTTTTTTTTTTTGAGAAGCTCTTTTATTTTGCTTCTTCACCCTTTCTAAAAGTTTAAGGAATTTTTCAAGCTCTCCAAAAGAGGGCAAAGATTAATCTACCATGCATCTACCTTGCAGTGTGGGGATTCTGTTGAGTGGTAGTATTGTTGAGCAGTACATGCATAAAGCACAGATTCGCATTTCATAGTATTAGCCAGTACCAGCTTTGGTGATGTTAGGAGTTCTGGAGCTTAATTTTCTATGGATCATCTGTAGTGTGTAAATGTATTGCCTTCTGCCCACCTTGATACATAAACTTTTGCAGGAATGGACAACCCCTGAGAACTGTTTAACTTTCATACCACACAAAGCTGCTTGCCATTCTCTTGTGTTATGACAATAATTGTTATCTGTCATTTTGTACTGTAAATTCCTGGCAAATGCTTTACAGTCAATAATGTTGCTTTAAATTGTTGCCCTCCCAACATGCTTGATGTTTGGCCTAATCTCCAGGCCAAAAGACTGAGATGAATCAAAACCAGTGAACTTTTTTTTAATGTTTTTGAATTCCCTTTTAACCCAGTGTACTAGGTCAATCAGAAGGCATCTGGGAGGAGAAAAAAAAGCAAAAAATAATTTTTAAAAAATTGATTCCCATATTGCATTGATTTTTAAAAACCTAAAATATATAATAATAATTCCAAGTAAAAATTTATTCTGGTCTGAGTAGATAAAACATCAATGCTCCCAAAGGAAAAGCAGTCTATCATTGGAGGAGCCTTATGACAAGCCTTTGTGCTCTATAGCAAACACTAAAGACTGGTTTACATACGTCTCCAGTAACAATATGGCACTTGACTTGTAGACATGTCAGAACCTTGACCCTATTTCTTTTGTGGCAGAGTGTGTTGCGTTGAAAATTGAGTGTGTATACTTTTATCAACCTTGTAAATAAGTGATTTTGGGAGTTTCCAGTCAACAATAAAGGACCAAGAGTGTCCAGCACAGGAGTGGCCTCAGTGATTGAAGTAAGTGAATTCAGCTATAATTGAAGCTGGTAAGAGGGCCTTTTAAAAATTAAAAGTTGATACAGTACAAGAAAGTAAGTTACTGCTGCTTACCATTCAGAGACTTACGGGTGCTTGCCTGCATTATAATAAAAGAACTTAATTATTGAGCAAGACCTATATTTATCTCTTCACTTTGGACAGCCTAATAAACTATTATTACAGTTTCTCTATTGACTTTCAAACGTTTTGAAGTTTGAAAGACACCTTTGCAATTAACACAGCATGAGCACAACCAGAACAGAGAACGCTGTTATAATGGGTCTGTCCAGTCAAAATGGTCAGCTGAGGGGTCCCCTGAAACCCAGTGGTGGCCCTAGAGGAGAGGCCACACAGACACAGCAACAGACGAACCAGCTGAAAAACACCAACACAATAATAGCACTCAACCACAAGCGCAGAGTATGACCACCACTATTAAGCCTGGTGATAATTGGAAGAAGACTTTAAAACTCCTTCCAAAGGATCTAAGAATCAAAATGTTGGATGTGACCTCTACAAGAGGATATTAATTTGAAGATTACTGTTTGAAACGGCAGTTACTGATGAGAATTTTTGAAATGGGATGGAAAAAGCCATCTCCTTTCCAAGAAGAGAGCATTCCCATTGCTTTATCTGGTAGGGATATCTTAGCTAGAGCAAAAAATGGAACAGGCAAGAGCAGTGCCCATGACATTCCCCTACTTAAAAGGCTAGACCTGAAGAAGGACACTATACAAACAATAGTGATTGTTCCCACAGGAGGACCTGCTCTACAGGTCAGTCAAATTTGCATCCAGGTCAGCAAACACATGGGAGGAGTCAAAGTGGTGATGACCACAGGAGGAACCAATTCAGGAGATGACGTACTGAGGCTGGATGATACAGTGCACATGGTGATTGCTGCCCCTGGGAGAATCCTGAATCTTATTAAGAAAGGAGTAGCAAAGGTCAGTCATGTCCAGGTGATAGTATTGGATGAGGCAGATAAGTTTCTGTCCCAGGATTTTGGGCAGTTAATGGAAGATATTATTCTCATGCTACCTGAAGACAGGCAGATTTTACTACATTCTGCTACTTTCCCTCTTAGTATACAGAAGTTCATGAATTCCCATTTGCAGAAACCCTGAGACTAACCTGATGGAAAAACTAACTCTGAAGGACATAACCCAGTACTACGCATATGTAACTGAGCACCAAAAAGTACACGGCCTCACCACACTTTTCTCCAGGCTTCAGCTAAACCAGATGATCATTTTCTTTAACTGCTCTCAGCGAGTTGAATGGCCAGCCAAAATTTCTCAACTGGGTTATTTTTGTTTCTACATTCATGCTAAAATGAGGCAGGAACATCAAAATTGTGTATTTTATTATTTCTGAAATGGCTTATTCTCATTTGCACTGATCTGTTTACTTGAGGTATTGATATACAAGCTGTGAATGTGGTAATAAACTTTGACTTTTCAAAGCTAGAAGAGACCTATCTCCGTCATATTGGAAGACCAGGTCACTTTGGCCATTTTGGCTTAGCCATCAACTTGATCACATATGGCGATCACTTCAACCTGAAAGGTATTGAGGAGCAGCTGGGAAAAGAAATAAAACCTATTCCAAGCAACATTGACAAGAGCCTGCATGTGGCAGAATTCCACAGCAAGGCTGTAGAAAATGAGAAGCCTTAATAAGCACTCTTTGACAAACTGTGGAAGCCTTGTTTGGATCTATGACATACCATTTTTTAGAGAGGAGTGCTCTTCTCTTTGTGAGTTTTTCATCTTTTATTTCAGAACTATGAAGACTTAAAAGAGTTCAGAATTTTTTTTTTCCTTTTTTAACTGGTGAAGAGAAAAAAGCTGAAAAGAAGGAATATTCCTTTTTTTTTGTTCCATCTGTTTGCACTGTATGCTAAGTGAACATTAGTTGCACTAACTGCTGGTTTTAAAAAAATGTTTTCTGGGGAAAGGGGACAGGAAAGGAAAAGAAAGAAGGGGAGAAACCCTAAAAAGAGAAGAATCTTAATGAACACAAAAGCTTGTCTATTATTTCAAAATTCTCCAACATCTGACTCTCGAGGACATTTCAACTTCTCCCTAGTCATCCATTTTTTTTTTAAGCCTGAGGAGCTTATTACTCATTTGTGTGAAGTGCTGTATGCTCTGAGTTATTCAGAATATCATCTTTTAGACACAGACCAAAGAATCAACAGTAGTACTCTTTCTTTCCTTTATTCTTTAAAAAATTTTTGTCTTTTAATTTTGGTTTTAGGGTGAAGTCTCTGTTTTCTTTCTACCCAATACTGAAGCCCAGAGCTGGTAGATGAAACTTATTAGTCAGTTAAATACCATTTTCTTTTTCTTTATATTGGAGGAGTTGATATGCAGCTGCAGTTCATCCACACTGTAAACACATGTATTAAAAAAATCCCAACAg
>XM_005271417.4
gggggcgggCGGAGGTTTCCGAGGAGGAAGGAGCGTCCGCCATTTTGGGAGCTTCGAGTCAACAATAAAGGACCGAGGGTGCCGAGCGGGAGTGGCCTCGTTGATTGACGTGAGTGAATTCAGATATAACTCAAGCTTGTTAGAGGGCTTTTTAAAAATAAAAAGTTGATTCCGTGCAAGAGAGCAAGTTACTGCTGCTTACCGTTCAGAGACTTACAGGTGCTTGCCTGCATTGCAATAAAGGACTCATTTATTGAGCAAGACTTATATTTATCTCTTCATTTTGGAGAGCCTAATAAACTGTTATTACAGTTTCTCTACTGACTTTCAAAAGTTTTGAAGTTTGAAAGACCTTTGCAATTAAAACAGCATGAGCACGGCCAGAACAGAGAACCCTGTTATAATGGGTCTGTCCAGTCAAAATGGTCAGCTGAGAGGCCCTGTGAAACCCACTGGTGGCCCTGGAGGAGGGGGCACACAGACACAGCAACAGATGAACCAGCTGAAAAACACCAACACAATCAATAATGGCACTCAGCAGCAAGCACAGAGTATGACCACCACTATTAAACCTGGTGATGACTGGAAAAAGACTTTAAAACTCCCTCCAAAGGATCTAAGAATCAAAACTTCGGATGTGACCTCCACAAAAGGAAATGAGTTTGAAGATTACTGTTTGAAACGGGAGTTACTGATGGGAATTTTTGAAATGGGCTGGGAAAAGCCATCTCCTATTCAGGAGGAGAGCATTCCCATTGCTTTATCTGGTAGGGATATCTTAGCTAGAGCAAAAAATGGAACAGGCAAGAGCGGTGCCTACCTCATTCCCTTACTTGAACGGCTAGACCTGAAGAAGGACAATATACAAGCAATGGTGATTGTTCCCACTAGAGAACTTGCTCTACAGGTCAGTCAAATTTGCATCCAGGTCAGCAAACACATGGGAGGGGCCAAAGTGATGGCAACCACAGGAGGAACCAATTTACGAGATGACATAATGAGGCTTGATGATACAGTGCACGTGGTGATTGCTACCCCTGGGAGAATCCTGGATCTTATTAAGAAAGGAGTAGCAAAGGTTGATCATGTCCAGATGATAGTATTGGATGAGGCAGATAAGTTGCTGTCACAGGATTTTGTGCAGATAATGGAGGATATTATTCTCACGCTACCTAAAAACAGGCAGATTTTACTATATTCCGCTACTTTCCCTCTTAGTGTACAGAAGTTCATGAATTCCCATTTGCAGAAACCCTATGAGATTAACCTGATGGAGGAACTAACTCTGAAGGGAGTAACCCAGTACTACGCATATGTAACTGAGCGCCAAAAAGTACACTGCCTCAACACACTTTTCTCCAGGCTTCAGATAAACCAGTCGATCATTTTCTGTAACTCCTCTCAGCGAGTTGAATTGCTAGCCAAGAAGATTTCTCAACTGGGTTATTCTTGCTTCTATATTCATGCTAAAATGAGGCAGGAACATCGAAATCGTGTATTTCATGATTTCCGAAATGGCTTATGCCGCAATCTTGTTTGCACTGATCTGTTTACCCGAGGTATTGATATACAAGCTGTGAATGTGGTAATAAACTTTGATTTCCCAAAGCTGGCAGAGACCTATCTCCATCGTATTGGAAGATCAGGTCGCTTTGGTCATCTTGGCTTAGCCATCAACTTGATCACATATGATGATCGCTTCAACCTGAAAAGTATTGAGGAGCAGCTGGGAACAGAAATTAAACCTATTCCGAGCAACATTGATAAGAGCCTGTATGTGGCAGAATACCACAGCGAGCCTGTAGAAGATGAGAAACCTTAACAAGCATGCTTTGACAAATTACAAAAGGCTCGTTTGGATCTGTGACACATCGTTTTGGGGGGAATGCTCCTCTCTTTGTGGGTTTTTCATCTTTTATTTTGGAACTATGAAGACTTAAAAGAGCTCAGACATTTTCTTTTTTTAACTGGTGAAGAGAAAAAGGCTGAAAAGAAGGAATATACCTTTTTTGTTCCACTTGTTTGCACTGTGTGCTGACTGAACATTAGTTGCACTAACTGCTGGTTTTTAAAAAATGTTTTCTGGGGAAAGGGGACAAGGAAGGAAAAGAAAGAAGAGAAGGGGAGAAACCCTAAAAAGAGAAGAATCTTAATGAACACACAAGCTTGTCAATGATTTCAAAATTCTCCAACAGCTGACTCTCGTGCATTTCAACTTCTCCCTGATTCCTCATCCGTTTTTTAAGCCTGAAGAGCTTATTACTTATTTGTGCGAAGTGCCTTATGCTATGAGACCATTCAGAATATCATCTTTTAGACACAGCCCGAGGAATCAACAATAGTAActctttctttccgtttttttttctttttcttttAAAAAATGTCTTCTTATTTTGGTTTCAGGTTGAAGTCTCTTCCCTTTCTACCCAGTACTCGAGCCCAGGGCTAGAAGTTGAAACTCACTAGTAATGTTAAACACCATTTTTTTTTTCTTTTTGGGGAGGAGTTGATATGCAACTGCAGTTCATCCGCACTGTAAATACATGTATTTAAAAAAACAATCCCAAGTAAAAATTTCTTCTGGGCTGAGTAGATAAAAAACATCATCGCTCCCAAAGGAAAGAGCAGTCTATCATTGCAGGAGCCATATGACAAGCCTTTGTGCTCTATAGCAGACACTAAAGACTGGGTTACATATGCCTCCAGTAGTAGTATGGCACTTGATGTGTAGACATGTCAGAGCCTTGGCCCTCTTTCCTCTGTGGCAAAGCGTGTCCCATAGAAAATTGGGTGTGTATACTTGTATAACTTTGTAAATAAGTTTTTTTTCTGGGTTCatatatatatatatatatacatatatatatatTTTTTTTTGGATGAAGGTTGCTGGGATTAAGGGGATTAGAGTGATTATGGGAGCAGCTAAAGATGAGAGGGGCTCAGTTTTACGCAACACTAAATTCTAGAAAGTACTTTGGCCTCGTGCTGTAGAGAGCAGATTTCTATGGTACCCTGTGTTAGTAAAGGGGCCCAGAAATCTGGGATGTACTGTTTGCTGCCACACTGTCTCATCTAGTACCTTTGGAGTAGGTTTACCAGAGAGAGCAAGGAAGCTTCAAAACATTGATAATTCAACATTTATTTTGAGAAGCTCTGATTTTGCTTCTTCCCCCTTTCTAAAAGTTTGAGGAATATTTCAAGCTCTGCAACAGGGGGCAAAGATTAATCTACCTTGCAGTGTAGGAATTCTATTGAGTGGCAGTGTCATTGAGCAGTATATATATAAAGCACAGATTTGCATTTCAGAATATTAGCCAGTACCAGCTTTGGTAATGTTAGCAGTTCTGGAGCTTAATTTTCTGTGGATCATTTCCTGTAGTGTGTAAATGTGTTGCCCTCTGCCCGCTTTGATACATAAACTTTTGCAGGAATGGGCAACCTGAGAGCTGTTAACTTTCATGCTACAGAAAGCTGCTTGCCATTCTCTTGCATTGTGACAAGAATTGTTACCTGTCATTTTGCACTGTAAATTGCTGGCAGATGCTTTACAGTCAATAGTGTTGCTTTAAATTGTGCCCCTCCCAACATGCTTGATGTTTGGCCTGATCTCCAGGCAAAAGGAGTGAGATGAATCAAAACCAGTGAACTTTTTTTTTTAATGTTTTTAATTCCCTTTTAACCCAGTGTACTAGGTCAATCAGGAGGCATCTGGAAAGGGGGGGaaaaaagcaaaaaacaaaattaaaaaaaaTTGATTTCCATATTTTATTTTTCAAAACCCTAAAATATTACAAAATAAGTCCCGCATATACTTTAATGTTTTAACTCTTTTGGACAAAGGAATCAATTACTTGAAGTTGCTTTTTTGACTCTGCCTACTTCTGAGCAAACTATTTGCGACTCACCCACAATTCCTTGGAGATCAAAATCCTACAGATGCCTCCTGATGGGACATAGCCCTAACTCCTTAACAACTGTAGCAAGAACTGCACGGTACAAACCCAAAAAAGAACAAGCTCATCTATTTGGAACCCAAGCCTCATATTTTCTGTCCAGTCAATGTTGGTTACTAAATAGAAAACCTAATTAAGGAAGTAACTTTTTTCCAGGGAGGGGTGGGA

Publications

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