Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name Ddx6P1
Plot displaying the genomic locations of a retrocopy (in chr2) and its respective parental gene (in chr9). Each line represents a retrocopy.
Species Mus musculus
Coordinates chr2:24068518-24071217  UCSC
Strand +
Parental Sequence NM_181324.3
Parental seq. overlap 2473 bp
Parental seq. overlap (%) 40.9%
Genomic Region Intergenic
Retrocopy Summary Ddx6P1, located on chr2:24068518-24071217, is a retrocopy of the parental gene Ddx6. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name Ddx6
Full Name DEAD (Asp-Glu-Ala-Asp) box polypeptide 6
Also known as 1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck
Coordinate chr9:44514113-44552028
Strand +
Gene summary Predicted to enable mRNA binding activity and protein domain specific binding activity. Acts upstream of or within negative regulation of neuron differentiation and stem cell population maintenance. Located in P-body. Is expressed in several structures, including brain; early conceptus; neural tube; oocyte; and trunk somite. Orthologous to human DDX6 (DEAD-box helicase 6). [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Human Homo sapiens DDX6P1
Chimpanzee Pan troglodytes DDX6P1
Bonobo Pan paniscus DDX6P1
Gorilla Gorilla gorilla DDX6P1
Orangutan Pongo abelii DDX6P1
Dog Canis familiaris DDX6P1
Greater horseshoe bat Rhinolophus ferrumequinum DDX6P2
Egyptian rousette Rousettus aegyptiacus DDX6P1
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>Ddx6P1
CTTTTGGGAGCTTCGAGTCAACAATAAAGGACCGAGGGTTCGGAGCAGGAGTGGCCTCGGTAAATGAATTCAGATATAATTCAAGCTTATTagagggctttttaaaaaaataaaaaattgattcAGTGTATGAAAGCAAGTTAACTACTTCTGTTCACCATTGAGAGACTTACAGGTGCTTGCCTGAACTGCAATAAAGGACTCTTATTATTGATCAGGACTTATTTATCTCTTCATTTTGGAGAGCCTCATAAACTGTTATTACAGTTTCTCTACTGACTTTGAAAAGGAGCACGGCCAGAACAGAGAACCCTGTTATCATGGGTCTATCCAGTCAGAACGGCCAGCTGAGGGGCCCTGTGAAAGCCAGTGCTGGCCCTGGAGGAGGGGGCACACAGCCACAGATGAACCAGTTGAAGAACACCAACACAATCAATAACGGCACTCCGCAGCAAGCCCAGAGCATGGCCGCCACGATTAAGGACCTGGTGATGACTGGAAAGACATTAAAACTCCCTCCAAAGGATCTAAGAATCAAAACTCTGGATGTGACCTCCACAAAAGGAAATGAGTTTGAAGATTACTGTTTGAAACGAGAGTTGCTAATAGGAATTTTTGAAATGGGCTGGGAAAAAACCATCTTCTATTCAGGAGGAGAGCATTCCCATTGCTTTATCTGGTAGGGATATCTTAGCTAGAGCAAAAAATGGAACAGGCAAAAGCGGTGCCTACCTCATCCCCTTACTTGAAAGGCTGGACCTGAAGAAGGACAATATTCAAGCAATGGTGATTGTTCCCACTAGAGAACTTGCTCTACAGGTCAGTCAGATTTGCATCCAGGTCAGCAAACACATGGGAGGGGCCAAAGTGATGGCAACCACAGGAGGAACCAATTTACGGGATGACGTAATGAGGCTTGATGATACAGGGCATGTGGTGATTGCTACCCCTGGCAGAatcctggatcttatcaagaaaTGCCTAGAAAAGGTTGATCATGTCCAGATGGTAGTATTGGATGAGGCAGATAAATTGTTGTCACAGGACTTTGTGCAGATAATGGAGGCTTTTATTCTCACACTACCTAAAAATAGGCAGATTTTACTATATTCCGCTACTTTCCCTCTTAGTGTACAAAAGTTTATGAATTCCCATCTGCAAAAACCCTACGAGATAAACCTGATGGAGGAACTAACTCTGAAAGGAGTAACTTAGtactacacatatgtaacagagtaCAAAAAAAGTGCACTGCCTCAATACACTTTTCTCCAGGCTTCAGATAAACCATCCCATCACTTTCTGCAACTGTTCTCAGAGTTGAATTACTGGCCAAGAAGATTTCTCCGCTGGGTTACTCTTGCTTTTATATCCGTGCTAAAATGAGGCAGGAACATCGAAATCGTGTCTTTCATGATTTCCGAAATGGCTTATGCTGCAATCTTGTTTGCACTGATCTGTTTACCCGAGGTATTGATATACAAGCTGTGAATCTGGCAGAGACCTATCTTGATCGTATTGGAAGATCAGGTCACTTTGGTCATCTTGGCTTAGCCATCAACTTGATCACATATGATGATCGCTTCAGCCTGAAGAGTATTGAGGAGCAGCTGAGGACAGAGATCAAACCCATCCCAAACAACATTGACAAGAGCCTGTATGTGGCAGAATACCACAGAGAGCCTGCAGAAGATGAGAAACCATAACAAGCATGCTTTGACAAACTACAGAAGGCTCTTTGGATCTGTGGCACATCAttttgggggtaggggggagTGCTCTaatctttgtgggttttttcatctttattttggaACTATGAAGAGTTGTATAAGAGctcagacatttttctttttttttgaactggtgaagaaaaactgaaaagaagacATAGACCTTTTTTGTTCCACTTGTTTGCACTGTGTGCTGACTGAACATTCGTTGCACTAACTGCTGgtttttaaagatgatttctgGGGAAAGGGGACAaggatggaggaaaagaaaagaaggggagaaaccctaaaaaagagaagaatttgggTGAACATATGCACCTGTCTAAAGTTCTCCACTAGCTGACTCTACTGCATTTCAACTTCTCCCTGTTTATTCATCCATTTTTAAGCCTGAAGAGCTTATTACTTATTTGTGCGAAGTTCCTTATGCTACAAGACCATTAAGAATATCATCTTTATACACAGCCCAAGGAATCAACAGAGTcatgttctattttcttttttatttctttgcctcTTCATTTTGGTTTCAAGTTGAAGTCTCACTTCTTGTTCTACCAGTACTCACGCCCAGGGCCGGAAGGTGGACTAGTGATGGTAGtgccattttccttttctttatatggAGGAGTTGATTCACAACTGCAGTCCATCCACActgtacatacatgtatttaaaaaaaaaaaataccaagtaaAATTTTCTTCTGGGCTGAGTAGACGTACCATCATCGATCCCAAAGGAAAGAACAGCCTCTCACTGCAGGAGCCAGATGATAAGCCTCTGTGCTCTACAGCAGAACACTACGCTGGCTCACACGCGTCCATGAGCAGGAAGGCACTCGCTGTAAAGAC
>NM_181324.3
TTTTGGGAGCTTCGAGTCAACAATAAAGGACCGAGGGTGCGGAGCGGGAGTGGCCTCGGTGatTGAAGTGAGTGAATTCAGATATAATTCAAGCTTGTTagagggctttaaaaaaaaaagttgattcgGTGCATGAAAGCAAGTTAACTACTGCTGCTCACCGTTGAGAGACTTACAGGTGCTTGCCTGAACTGCAATAAAGGACTCATATTATTGAGCAGGACTTATTTATCTCTTCATTTTGGAGAGCCTCATAAACTGTTATTACAGTTTCTCTACTGACTTTGAAAAGTTTGAAGTTTGGAAGAGACACCTGTGCAGCTAACAAAGCATGAGCACGGCCAGAACAGAGAACCCTGTTATCATGGGTCTGTCCAGTCAGAACGGCCAGCTGAGGGGCCCTGTGAAGGCCAGTGCTGGCCCTGGAGGAGGGGgcacacagccacagccacagctgaACCAGTTGAAGAACACCAGCACAATCAATAATGGCACTCCACAGCAAGCCCAGAGCATGGCCGCCACTATTAAACCTGGTGATGACTggaaaaagacattaaaactcCCTCCAAAGGATCTAAGAATCAAAACTTCGGATGTGACCTCCACAAAAGGAAATGAGTTTGAAGATTACTGTTTGAAACGAGAGTTGCTAATGGGAATTTTTGAAATGGGCTGGGAAAAACCATCTCCTATCCAGGAGGAGAGCATTCCCATTGCTTTATCTGGTAGGGATATCTTAGCTAGAGCAAAAAATGGAACAGGCAAAAGCGGTGCCTACCTCATCCCCTTACTTGAAAGGCTGGACCTGAAGAAGGACAATATTCAAGCAATGGTGATTGTTCCCACTAGAGAACTTGCTCTACAGGTCAGTCAGATTTGCATCCAGGTCAGCAAACACATGGGAGGGGCCAAAGTGATGGCAACCACCGGAGGAACCAATTTACGAGATGACATAATGAGGCTTGATGATACAGTGCATGTGGTGATCGCTACCCCTGGCAGGATCCTGGATCTCATCAAGAAAGGCGTGGCAAAGGTTGACCATGTCCAGATGATAGTGCTAGATGAGGCAGATAAATTGTTGTCACAGGATTTTGTGCAGATAATGGAGGATATTATTCTCACACTACCTAAAAATAGGCAGATTTTACTATACTCCGCTACTTTCCCTCTTAGTGTACAAAAGTTTATGAATTCCCATCTGCAAAAACCCTACGAGATAAACCTGATGGAGGAACTAACTCTGAAAGGAGTAACTCAGTACTACGCATATGTAACGGAGCGCCAAAAAGTGCACTGCCTCAATACACTTTTCTCCAGGCTTCAGATAAACCAGTCCATCATTTTCTGCAACTCCTCCCAGAGAGTCGAGCTACTCGCCAAGAAGATTTCTCAGCTGGGCTACTCTTGCTTTTATATCCATGCTAAAATGAGGCAGGAACATCGAAATCGTGTCTTTCATGATTTCCGAAATGGCTTATGCCGCAATCTTGTTTGCACTGatcTGTTTACCCGAGGTATTGATATACAAGCTGTGAATGTGGTAATAAACTTTGACTTCCCAAAGCTGGCAGAGACCTATCTTCATCGTATTGGAAGATCAGGTCGCTTTGGTCATCTTGGCTTAGCCATCAACTTGATCACTTATGATGATCGCTTCAACCTGAAGAGTATTGAGGAGCAGCTGGGGACAGAGATCAAACCCATCCCAAGCAACATCGACAAGAGCCTGTATGTGGCAGAATACCACAGTGAGCCTGCAGAAGACGAGAAACCGTAACAAGCACGCTTTGACAAACTACAGAAGGCTCTTTGGATCTGTGACACATCATTTTGGGGGGGTGCTCTtctctttgtgggttttttcatctttattttggaACTATGAAGAGTTATATAAGAGctcagacatttttcttttttttaaactggtgaagaaaaactgaaaagaagacATAGACCTTTTTTGTTCCACTTGTTTGCACTGTGTGCTGACTGAACATTCGTTGCACTAACTGCTGGTCtttaaagatgttttctgggGAAAGGGgacaaggaaggaggaaaagaaaagaaggggagaaaccctaaaaaagagaagaatttgggTGAACACATGCACCTGTCTAAAGTTCTCCACTAGCTGACTCTACTGCATTTCAACTTCTCCCTGATTATTCATCCGTTTTTAAGCCTGAAGAGCTTATTACTTATTTGTGCGAAGTGCCTTATGCTACAAGACCATTAAGAATATCATCTTTACACACAGCCCAAGGAATCAACAGAGTcatgttctattttcttttttatttctttgcctcTTCATTTTGGTTTCACGTTGAAGTCTCACCTCCTGTTCTACCAGTACTCAGCCCAGGGCCGGAAGGTGGACTAGTGatggcagcgccattttccttttctttatatggAGGAGTTGATTCACAACTGCAGTCCATCCACActgtacatacatgtatttaaaaaaaaaaacaataccaaGTAAAATTTTCTTCCGGGCTGAGTAGACGTACCATCGTCGCTCCCAAAGGAAAGAGCAGCCTCTCACTGCAGGAGCCAGATGACAAGCCTCTGTGCTCTACAGCAGAACACTACGCTGGCTCACACGCGTCCATGAGCAGGAAGGCACTCGCTGTAAAGACTTGTCGGAGGGAGCCTTGACCTTCTTTCCTCTGTGGCAAAGCGTGACCCGTAGAAAATTGGATGTGTATACTTGTATAAACTTTGtaaataagttttttttctgggttcatatatatatatatatatataaatatatatatatacatacatatatatatattattttttttggaTGAAGGTTGCTGGGATTAAGGGATTAGAGTGATTATGGGAGCAGCTAAAGATGAGAGGGGCTCAGTTTTCTGCAacactaaattctaaaaagtgCTTTGGCCTCTAACTGTAGGAAGCAGACCTCTGCAGGCTCTGTGTTGGAAAGGGGCCAGAAGCCCGGCCACACTGCTCTTGTAATGAATGCACAGGCAGCGGTCTTAGCAGACAGCAAAGGAGCTTTGCAAGGCTGTGGTCCCTGGGGGCTTTGAGAAGCTCTGTGGTTTGGCTCTCCTGTCCTAAACGTTTGAGGAACTTCCCAAGTTCTGCAAAGGGGAACAAAGATAAATCTTCCTTGGAGTGTGAGAAGTGTACAGAGTGCAGTCTTAGAGGAGAGTGTGTGGAGCATGGATTTTTATGTCACCGGACCAGCCAGTGCAGCCTCGGCGGGCTTGGCAGTTGTGGAGCCTAGTTATCCGCGGCCCCTCCTGTTGTGTGTGAGCAGCGCCCTCTGCCTATCTTGATAAATACATTTTTGCAGGAAGGGGCAGCCCGTTAGAGCTGTTAACGTCCATGTCCATGCTGCAGAAAGCTGCTTGCTGCCCGTTCTCTGTGCCGCACTAAGAGTTGCTGTCTGTCGTTTTGCATTGTAAATCGCTGGCAGATGCCTTAGGTGGTAGTGTTGCTTTAAACTGTGCCCCTCCCAACACGCTTGATGTTTGGCCTGATCTCCAGGCAAAAGGAGGGAGATGAATCAAccagtgaactttttttttaaaaatgtttttaattcccTTTTAACCCAGTATACTAGGTCAGGAGGCATCTAgggaacaaaaaaagcaaaaaacaaaatttaaaaaaaaattgattttcatATTCCATCACTTTGAAGACCTTAAAACTATGACAAGGTATGTTGAGTCTGCTTCCATGCTTAACTCGTCTGAAGAGAGGAGTCAGTTATTCAAAGTTGCTTTGACTTTGCCTAGTTCTAAAGCAAAACTATTTGTGACTTATCCCAAATTCTTTGGGGATCAAAATCCTACAGATGCCTCCTTATCAGAGATAACCCTGACTCTGTAACAACTGTAGCAGGAGCTGCACGGTACAAATCCCCAAAGGCAAGTCCAGTCAAGTGTTGGctacaaaacaaaccaaattaaTAAGGAAGTCACTTTTTTagggagggtgggagtggggtctTAAAAACTCGTTATTTTGACCAACAGATCTTGCCCTTGTACCGATGCAGctctcctccttcctgcctttgGCGAGATGAGGGATCGCTCCGTAGAGCAACATGAGCAGGAAAGGAGTACAAATGCAATCTGCTGTCTCGCCAGAGGGCAAGTGGGTGATCAACAAAGTGCAGTCTCTTGCCAACCTTGGACTGCTCTGCCAGGTGCCACATGCCTCTGAGTCCCTCTTAAAGCACAGACTCCATGGGGGAGTGTTCTGAAGTACAGCCTCTGCTGAGGGTGGCACTTGGACAGCTGGGCACCCACCCCGGAGATCGCTGTCTGAAGAGGCGGTGCTGGGGTGGTGCTTAGCTCACTTGAGCTGTTGTTAATGGGAAGATGCCCTACTGACCAGGTCAAAccctggttgggtttttttgttgtttttttttttttttatcctttttgaTCCCTCTTAATAAGGAATATTGCTACTATTGGAAATTGTCTTTCAGGTTCTTTCcagtaatttttaaagtaatggTTATGTTTTGGTTTTCGCCAGTAGTTCATTTCGATAAAAACTATGTCCTATTTTTAATATCCACCTCAATGCTTTTAGCCTCTGGTCATGTAGTTGTGTGATAAGTAACAGACTGTTACACACTTGCTGCTCAGGGCctgtttttttctctcccttagTGTTCTGAACATGAAAGAAACTTTCTTAGGAATGGAATACATTTACCATAAAATGTTTTTCCTGGAAAGGAAAACCTAAGTAGCTCTAAATTATTTCCAGGTGGGCACCAGCATCATAACAATTGGTTGGcccggtggggtggggtggggtgggctgggtGGGTGGTTGTCATACTCGTTTTCAGAATGAGATGAGGGCATCTTTCCTTGGCCACCTGCTTTGTGCTGGACACCATCGTGCTCGGTGAGAACAGAGCACAGCACAGAGTTTGGAGTGACATGTTGGAAACAAAACATCTCATTCTGAtcatttggtttatttttttttaataggggtgggaggggagggtactGTGTCCCAAAAGGGAGGGTGTCTGCACTAAGGATTTAGAAACACTTTGGAAGCTCATAACCTCATGGGAAACTGCCTTTAGCCACACACACTCCTGACCTTTAGATGAGTAACAAAAAGATGAAATAAGTTTGTGGGAATTAAGCCATGTTATTTTAattggatacttttttttttcaactctctGTGTATCTTTAAAATTGTTACTGTGGAATGATTTTCTTGCCAAATAACTTTGTCAGGCAAAATTATTGGCCTCATGGGAGGTGAAGTAAGCCAGATTTTGGGTAAATTTATGTGGACTTTGGTGAGTTTGTAATTCTACTTTATATTCATAAAGATAGTTTTTTAAAACTCCCAAAGCAAATCTATTTTCTTCTCTAATGTAAAAACTCATCTTTGGAATAAAGAGTTAAGTGTCCGAGGGTTGTAACAGATATGAGGTCAGAGGGAGCTAGCCTGGCCTGGACTCTGCCCCTCCACAGCTGACAGACTCCAACAGAAGTGTATTTAAATCTCCAGTAGACAGAGCTGGGCAGGGCAAGGGAGGGGTGGGCCTGGGTTAGTAAGCTGCAGGCTGCTGTATTTTAACCAGTGGTTCTTGGGGAGGGGTGCTGGAGAATACAAAGTCACTTCCCttttttgaaacaaaacaaattagaaaaaaaccaatttttttgtttagtaaaaataagaaaattctaATGTCCCTAGTCACAAGGGACCAGTTCCACTTTGAGCAGTAGGAActtaaaaatttgaaaacatttgGGGAAAGGGAAAATTGGCTTTCTGTTTAATTGGCAAATGTTCCAGTGGGGAGGGTCTGTTTTTGTTGGGATGTGTTACAGTGTATGTACATGTCTATGGACCTGAGTCTTTAAGGAGTTATATACATGGTTCATTCAGAAAAGATGGTTGGTAAAATCttgattgtttctttttgttaatttatcTCAATAAAAGCCCACTGGAACTTCA

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