Retrocopy Name | DFFBP1 |
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Species | Homo sapiens | |
Coordinates (hg38) | chr9:32564450-32567187 UCSC | |
Coordinates (T2T) | chr9:32580635-32583372 UCSC | |
Coordinates (hg19) | chr9:32564448-32567185 UCSC | |
Strand | - | |
Parental Sequence | NM_004402.4 | |
Parental seq. overlap | 1128 bp | |
Parental seq. overlap (%) | 31.6% | |
Genomic Region |
Intragenic (NDUFB6) |
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Retrocopy Summary | DFFBP1, located on chr9:32564450-32567187, is a retrocopy of the parental gene DFFB. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
Gene Name | DFFB |
Full Name | DNA fragmentation factor subunit beta |
Also known as | CAD|CPAN|DFF-40|DFF2|DFF40 |
Coordinate | chr1:3857286-3885429 |
Strand | + |
Gene summary | Apoptosis is a cell death process that removes toxic and/or useless cells during mammalian development. The apoptotic process is accompanied by shrinkage and fragmentation of the cells and nuclei and degradation of the chromosomal DNA into nucleosomal units. DNA fragmentation factor (DFF) is a heterodimeric protein of 40-kD (DFFB) and 45-kD (DFFA) subunits. DFFA is the substrate for caspase-3 and triggers DNA fragmentation during apoptosis. DFF becomes activated when DFFA is cleaved by caspase-3. The cleaved fragments of DFFA dissociate from DFFB, the active component of DFF. DFFB has been found to trigger both DNA fragmentation and chromatin condensation during apoptosis. Alternatively spliced transcript variants encoding distinct isoforms have been found for this gene but the biological validity of some of these variants has not been determined. [provided by RefSeq, Sep 2013] |
Species | Scientific Name | Retrocopy | |
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Chimpanzee | Pan troglodytes | DFFBP1 |
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Bonobo | Pan paniscus | DFFBP1 |
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Gorilla | Gorilla gorilla | DFFBP1 |
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Orangutan | Pongo abelii | DFFBP1 |
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Gibbon | Nomascus leucogenys | DFFBP1 |
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Green monkey | Chlorocebus sabaeus | DFFBP1 |
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Crab-eating macaque | Macaca fascicularis | LOC102142800P1 |
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Rhesus | Macaca mulatta | DFFBP1 |
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Baboon | Papio anubis | DFFBP1 |
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Golden snub-nosed monkey | Rhinopithecus roxellana | DFFBP1 |
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Marmoset | Callithrix jacchus | DFFBP1 |
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Mouse lemur | Microcebus murinus | Without Homology |
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Mouse | Mus musculus | Without Homology |
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Rat | Rattus norvegicus | Without Homology |
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Chinese hamster | Cricetulus griseus | Without Homology |
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Rabbit | Oryctolagus cuniculus | Without Homology |
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Pig | Sus scrofa | Without Homology |
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Cow | Bos taurus | Without Homology |
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Sheep | Ovis aries | Without Homology |
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Dolphin | Tursiops truncatus | Without Homology |
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Horse | Equus caballus | Without Homology |
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Dog | Canis familiaris | Without Homology |
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Panda | Ailuropoda melanoleuca | Without Homology |
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Cat | Felis catus | Without Homology |
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Pale spear-nosed bat | Phyllostomus discolor | Without Homology |
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Velvety free-tailed bat | Molossus molossus | Without Homology |
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Greater mouse-eared bat | Myotis myotis | Without Homology |
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Kuhl's pipistrelle | Pipistrellus kuhlii | Without Homology |
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Greater horseshoe bat | Rhinolophus ferrumequinum | Without Homology |
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Egyptian rousette | Rousettus aegyptiacus | Without Homology |
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Sloth | Choloepus didactylus | Without Homology |
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Tasmanian Devil | Sarcophilus harrisii | Without Homology |
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Opossum | Monodelphis domestica | Without Homology |
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Platypus | Ornithorhynchus anatinus | Without Homology |
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Chicken | Gallus gallus | Without Homology |
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Turkey | Meleagris gallopavo | Without Homology |
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Zebra Finch | Taeniopygia guttata | Without Homology |
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Budgerigar | Melopsittacus undulatus | Without Homology |
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Painted Turtle | Chrysemys picta | Without Homology |
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Lizard | Anolis Carolinensis | Without Homology |
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Frog | Xenopus tropicalis | Without Homology |
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Zebrafish | Danio rerio | Without Homology |
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Drosophila | Drosophila melanogaster | Without Homology |
>DFFBP1 |
GATACATTTACATAGTGCAAAAGGATGTTGTAGTTTCAAGCTTTTATGAAGAAAGTGTTTCTGTGTAGAAACTGGAAGCTGTTCAGTGCACTGGCAGCTGAACCCTGCTCCTGCTCCATTTATCAGAGTTACTATCATCTCAGATAATATGGAGCTCATGTCAGCAGTGCAGGTGGTGAGTGCGCAGAGACAATCTGGAAGGAAACGCTGATCTGAACAGCAGTAATCCTGGGGGACATGGGGGTGGGACTGGATTACAGAGGACTCATTTTCTAAATCATGTATTTTATGATACTTGAATTTTTTTGAAATGGGCATTTATTTAATGACATGTTATAATGTACTTTTTTTTAAAAAAGTGTAATATTTGAATTTTTACATTTGTTGTGTAATCAGCAGAAGCAATAAAGATTTTTCAGTGAATCATTTTTTGTACCTTCTGACAGCCCAACTTCCAGAGGACAACTTTGGGGTACTCACTGGATGTCTTGTGAGTCGTCAGTAGGGATAAGAATTGTCCTGAGCTGAGGAATTCTTCTGTTCTCTGGTTTTACCAGTATTTGGTTTGCTCATGTGGTGTGGTCACCATACTAAAACGGTGTCATGGCTGAAGTTAGCCACTCTTGTTTGAGGGACAAGTTGTTTATGCATCAGCTGTCTGCTGGCTCTCCATTTCCATGGCAAATGGGCAGCTCCATCCTTCTTGACTGTTCTAAATGCCCAAAAGAGAGGTGTCATGCTTTGGGGGTAAGATGTTTGTACTCCATAAAGAACATAAAAGGACATTCACTGCTGAATGAGCAGCTGGCCAGCGGGTGCCACTGCCTGCGGGGCCCAGAGGCGTTGAGTACATCTGCAGTGCTCCAGAAGCACAAGACTGTGAAGCTGCGGGCCCTGTGCAGCCCGAGGAAGTTTGGCATGGCGGGCAGGAGCTGCCGGGAGATGCTGCGCAAGGGCTACCTCTGCTTCTAGCTCCCTCGTACGAGGATGGCATGGAGCTGACCGAAGCGTCCTCGACGATGCCGAGCTGGTGCTGCTCACCTCACGCCAGGCCTGGCAGGGCTATGTGAGTGACATCGGGTGCTTCCTCAGTGCTTTTCGCCAGCCGCACGCGTGGCTCATCCAGGCCGCCCGGCAGCTACTGTGTGATGAGCAGGCCCCCACAGAGGCAGAGACTGCTGGCCGACCTCCTGTACAACGTCAGCCAGAACGTCGCAGCCGACACCCGGGCTGAGGACCCGCTGTGGTTTGAAGGCTTGGAGTCCCGATTTTGGAATAAGTCTGGCTATCTGAGATACAGCTGTGAAAGCCGGATCCGGAGTTACCTGAGAGAGGTGAGCTCCTGCTCCTCCATGGTGGGTGCAGAGGCTCAGGAGGAATTCCTGCGGGTCCTCCGCTCCATGTGCCAGAAGCTCCAGTCTGTGCAGTACGACGGCAGCTATACAACAGAGGAGCCAAGGGTGGCAGCCGTCTCTGCACACCGGAAGGCTAGTTCTCCTGCCAGGGTCCCTTCGACATGGACGGCTGCTTGTCAAGATACTCCATCAACCCCTACAGTAACAGGGAGAGCAGGCTCCTCTTCTGGACCTGGAACCTGGATCACATAGTGGAAACAAAAACGCACCATCATTCCTACACTGGTGGAAGCAGTTAAAGAACAAGATGGAAGAGAAGTGGACTGGGAATATTTTTATGGCCTGCTTTCTACCTCAGAGAACCTAAAATTAGTGTTGTCTGCCATAAGAAAACCACCCACAAAACCAGCTATGACCTGAACAGAATCTACAAACCCCAGACAAGGTTGAAGAGGAAGTGGCCTGTGTGAAAGCGCCAGTGACATATACACACCATATTCTCGTCTTTGTTCGAGGCCTGTCGTGGGCATAATTTTAACAGGTGCCTTTTTTTTTTTTTGGTCACTCCAGTAGCTCCTGGAAAAAACCTTAAAAAATATTTCCGGCAAATCTGATTTCAGTACATTTCTGAATCATTGt |
>NM_004402.4 |
ACCCGGCCTGTGCCAGCTTGCAGAGCTCACCAGGTGCAGACCCCTGCGGCCAGGGCGAGGACGGATCTGAGCAGCTGGGCAGCAGGTGCCACCGCCTGTGGGACCCAGAGGGCTTGAGGACATCTGCAATGCTCCAGAAGCCCAAGAGCGTGAAGCTGCGGGCCCTGCGCAGCCCGAGGAAGTTCGGCGTGGCTGGCCGGAGCTGCCAGGAGGTGCTGCGCAAGGGCTGTCTCCGCTTCCAGCTCCCTGAGCGCGGTTCCCGGCTGTGCCTGTACGAGGATGGCACGGAGCTGACGGAAGATTACTTCCCCAGTGTTCCCGACAACGCCGAGCTGGTGCTGCTCACCTTGGGCCAGGCCTGGCAGGGCTATGTGAGCGACATCAGGCGCTTCCTCAGTGCATTTCACGAGCCACAGGTGGGGCTCATCCAGGCCGCCCAGCAGCTGCTGTGTGATGAGCAGGCCCCACAGAGGCAGAGGCTGCTGGCTGACCTCCTGCACAACGTCAGCCAGAACATCGCGGCCGAGACCCGGGCTGAGGACCCGCCGTGGTTTGAAGGCTTGGAGTCCCGATTTCAGAGCAAGTCTGGCTATCTGAGATACAGCTGTGAGAGCCGGATCCGGAGTTACCTGAGGGAGGTGAGCTCCTACCCCTCCACGGTGGGTGCGGAGGCTCAGGAGGAATTCCTGCGGGTCCTCGGCTCCATGTGCCAGAGGCTCCGGTCCATGCAGTACAATGGCAGCTACTTCGACAGAGGAGCCAAGGGCGGCAGCCGCCTCTGCACACCGGAAGGCTGGTTCTCCTGCCAGGGTCCCTTTGACATGGACAGCTGCTTATCAAGACACTCCATCAACCCCTACAGTAACAGGGAGAGCAGGATCCTCTTCAGCACCTGGAACCTGGATCACATAATAGAAAAGAAACGCACCATCATTCCTACACTGGTGGAAGCAATTAAGGAACAAGATGGAAGAGAAGTGGACTGGGAGTATTTTTATGGCCTGCTTTTTACCTCAGAGAACCTAAAACTAGTGCACATTGTCTGCCATAAGAAAACCACCCACAAGCTCAACTGTGACCCAAGCAGAATCTACAAACCCCAGACAAGGTTGAAGCGGAAGCAGCCTGTGCGGAAACGCCAGTGACACGTACACACCACGTCCTGGTCTTTGTTTGAGGCCTGACGTGGGCATCATTTTAACAGGTGCCttttttgtttttttgtttttcgtttttttGGTCACTCCAGTAGCTCCTGGAAAAAACCTTAAAAAATGTTTCCTCCAAATCTGATTTCATTACATTTCTGAATTGTTGGGGTTTTTTttgttgttttgttttgttttgtagatggagtttcacttttgttgcccaggctggagtgtagtggcgcgatctcggctcagcctcccgagtagctgggattacaggcatgtgccaccacgcccggctaatgtttgtatttttagtagagacggggtttcaccatgttggtcaggctggtctcaaactcctgacctcaggtgatccgcccacctcagcctcccaaagtgctgggatgacaggtgtgagccactgcgcccagccTGAATCATTTCTTATACCTTCTGACAGCCCAACTTCCAGAGGACAGCTCTGGGGTACTCGTTGGATGTCTGTGAGTACCTGGTCATACGGGTCAGTAGGGATAAGAATTGTCTCTGGGCTGAGGAATTCTTCTGTTCTCTGGTTTCACCAGCGTTGGGTTTGCTCATGTAATGTGGTCACCATACTCAAATGGTGTCATGGCTGAAGTTGGCCACCTTGCTTGAGGGACAAGTTGTTTATGTATCAGCTCTCTGCTGGGTCTCCCTTTCCATGGCAAATGGGCAGCTCCATCCTCTTGACTCTTCTAAATGCCCAAAAGAGGTGTCATGCTTTGGGGGTACGATGTTTATACTCCGTAAAGAACATACAAGGACATTCACTGCTGAtttttttttttgtttgtttgagacagggtctcactctgtcgctcaggctggagtgcagtgatgcaatcttggctcactgcaacctccgcctctcaggttcaagtggttctccttcctcagcctcccaagtagctgggattacaggcacctaccaccagggccagctaatttttgtatgtttagtagaaacggggtttcaccatgttggccaggctgttctcgaactcctgacctcaggtgatctgcccgcctcggtctcccaaagtgctgggattacaggcatgagccactgcacctgaccTGCTGAATTGTTTATAATGGCAAGAAATAGGAAACCCCCCAATGTCTGTTGAACAGCTATCACgttgaaccacgtgaaactgctgttttctaggccaaaaatggtgagcgatcatttatttcatgattcaacctgaTACATTTACATAGTGCAAAACTGTGTCACAGTTTCAGGCTTTTATGAGGAAAGCGTTTCTGTGTAGAAACTGGAAGCTGTTCAGGGCATCGGCAGCTGAACCCTGCTCCGTTGGTCAGCGTTACTATCATCTCGGATCATATGGAGCTCATGTCAGCCGTGTGGGTGGCGGGTGCACAGAGACGGTCTGGAAGGAAACACGCGGATCTGAACAGCAGTAATCCTGGGGGATACGGGGGTTGGGCTAGATTACAGAGGGCTCATTTTCTACGTCATGTATTTTATGATACTTGAATTTTTTGAAATGGGCATTTATTTTATAACATGTTAAAATGTACTTTTTAAATTAAGTCATTTTGTAATATTTGAATTTTTACATTTGTTGTACAATCAGGAAAAGCAATAAAGATTTTTCAAAAATAGA |
PMID - Link | Title |
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No publications available for this retrocopy |