| Retrocopy Name | C4orf3P2 |
|
| Species | Homo sapiens | |
| Coordinates (hg38) | chr9:86132647-86135321 UCSC | |
| Coordinates (T2T) | chr9:98283874-98286542 UCSC | |
| Coordinates (hg19) | chr9:88747562-88750236 UCSC | |
| Strand | + | |
| Parental Sequence | NM_001001701.4 | |
| Parental seq. overlap | 832 bp | |
| Parental seq. overlap (%) | 30.4% | |
| Genomic Region |
Intergenic |
|
| Retrocopy Summary | C4orf3P2, located on chr9:86132647-86135321, is a retrocopy of the parental gene C4orf3. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
| Gene Name | C4orf3 |
| Full Name | chromosome 4 open reading frame 3 |
| Also known as | ALN|HCVFTP1 |
| Coordinate | chr4:119296419-119304445 |
| Strand | - |
| Gene summary | Predicted to act upstream of or within negative regulation of ATPase-coupled calcium transmembrane transporter activity and negative regulation of calcium ion binding activity. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022] |
| Species | Scientific Name | Retrocopy | |
 |
Chimpanzee | Pan troglodytes | C4H4orf3P2 |
 |
Bonobo | Pan paniscus | C4H4orf3P2 |
 |
Gorilla | Gorilla gorilla | C4H4orf3P2 |
 |
Orangutan | Pongo abelii | C4H4orf3P2 |
 |
Gibbon | Nomascus leucogenys | C7BH4orf3P1 |
 |
Green monkey | Chlorocebus sabaeus | C7H4orf3P1 |
 |
Crab-eating macaque | Macaca fascicularis | C5H4orf3P2 |
 |
Rhesus | Macaca mulatta | C5H4orf3P3 |
 |
Baboon | Papio anubis | C3H4orf3P2 |
 |
Golden snub-nosed monkey | Rhinopithecus roxellana | C2H4orf3P2 |
 |
Marmoset | Callithrix jacchus | Without Homology |
 |
Mouse lemur | Microcebus murinus | Without Homology |
 |
Mouse | Mus musculus | Without Homology |
 |
Rat | Rattus norvegicus | Without Homology |
 |
Chinese hamster | Cricetulus griseus | Without Homology |
 |
Rabbit | Oryctolagus cuniculus | Without Homology |
 |
Pig | Sus scrofa | Without Homology |
 |
Cow | Bos taurus | Without Homology |
 |
Sheep | Ovis aries | Without Homology |
 |
Dolphin | Tursiops truncatus | Without Homology |
 |
Horse | Equus caballus | Without Homology |
 |
Dog | Canis familiaris | Without Homology |
 |
Panda | Ailuropoda melanoleuca | Without Homology |
 |
Cat | Felis catus | Without Homology |
 |
Pale spear-nosed bat | Phyllostomus discolor | Without Homology |
 |
Velvety free-tailed bat | Molossus molossus | Without Homology |
 |
Greater mouse-eared bat | Myotis myotis | Without Homology |
 |
Kuhl's pipistrelle | Pipistrellus kuhlii | Without Homology |
 |
Greater horseshoe bat | Rhinolophus ferrumequinum | Without Homology |
 |
Egyptian rousette | Rousettus aegyptiacus | Without Homology |
 |
Sloth | Choloepus didactylus | Without Homology |
 |
Tasmanian Devil | Sarcophilus harrisii | Without Homology |
 |
Opossum | Monodelphis domestica | Without Homology |
 |
Platypus | Ornithorhynchus anatinus | Without Homology |
 |
Chicken | Gallus gallus | Without Homology |
 |
Turkey | Meleagris gallopavo | Without Homology |
 |
Zebra Finch | Taeniopygia guttata | Without Homology |
 |
Budgerigar | Melopsittacus undulatus | Without Homology |
 |
Painted Turtle | Chrysemys picta | Without Homology |
 |
Lizard | Anolis Carolinensis | Without Homology |
 |
Frog | Xenopus tropicalis | Without Homology |
 |
Zebrafish | Danio rerio | Without Homology |
 |
Drosophila | Drosophila melanogaster | Without Homology |
| >C4orf3P2 |
| TGAGATGAAGGTGGCCGCACCGGTTGTAGATGGTTGAGATGGTCCCTGGAAGTGGCAAGGCTTGAGCAAGGCTGGGAGATAGCAGCAGAACCTCGATGTGCAGCCTCAGTCCGGGGCAAACGGGCTTCCCCAACACCCCGGCTGGTTGGATCTCTGGCTTTGCATCCTTTCTGATGTGGTTTTCTTCTTTGCATACCTTTTGCCATCACTGATTTACTGACATCTACATTAAGAAGTTGGCCCTGGAGTGAATTCTGAAAATGACTACATACTTCTTGAATAAAGAAGATAGGACTGTCAGTAGAAGAATTTCAAAGCTCTAAGGGACCATCCTTTTATTTTACACTGTATTGTTATTAATTTGGAGAACTCTATGAAATGGGTAGGATTTCACCCACTCATAGCTAAGTTGTTAAAACTAGACCCTTTGGTTCATGTTTAAAAACGTTTCCAACAGCTGATGGTTTTACAGGGGCTGAATATAAAAGTATTTGTACTGAAGGATTTTGTGTATTCATTAAGAAACATAGTAATGTCTTTTCTTTAACATTTTAAGGGCTGATCAGGGTTTAATATGATGCAAATAATATGATGATTAATAAGGTGATGTTTTTATTAATTCAAAAGTAAATTATTTAAAAGCGGGGAAGCATTTTGAGAGAAGGAACAAAGTGCTCTTAGACGGCATGGAGGCTATAATACAAAAGATATACAGGAAATGCAGGCCCATAATGTATTTATTGGCTCTAAGTTCCAGCCTAATTTTTAGATTAAGTGGGACTCTTATGAAAAGACAGGTCATGATCAACAGGTTGATATAGTCTTAAGAAAAGTAGATAACATCCAGCTATTGGAAAGTTAGCATGCATGCTCTCTTACTTGGATATCTCCCCCTTTCCTTTAAACTCTTGAGCCCCCTAAAATTAAGGAGTATGTAGTTCAAGCATATTTTTTATTACTGTTACAGTAAGTATGCTTGTGGCCAAAACATTTATTTTACATTTGTTATTTAAATCGAAATTTTATTTAAGtACTTA |
| >NM_001001701.4 |
| GCACTGCGCAGGCGGCCGGACTCCGCTCAGTTTCCGGTGCGGCGAACACCAAAGTCCGGGAACTTAAGCATTTTCGGTTTCTAGGGTTGTTACGAAGCTGCAGGAGCGAGATGGAGGTGGACGCACCGGGTGTTGATGGTCGAGATGGTCTCCGGGAGCGGCGAGGCTTTAGCGAGGGAGGGAGGCAGAACTTCGATGTGAGGCCTCAGTCTGGGGCAAATGGGCTTCCCAAACACTCCTACTGGTTGGACCTCTGGCTTTTCATCCTTTTCGATGTGGTGGTGTTTCTCTTTGTGTATTTTTTGCCATGACTTGTTCGCTGATATCTAAATTAAGAAGTTGGTTCTTGAGTGAATTCTGAAAATGGCTACAAACTTCTTGAATAAAGAAGACAGGACTCTCAATAGAAGAATTTCACATCTCCAAGGGACCCTTCCTTTCATTTTACACTTTGTTACTAATTTGCAGAACTCTATTAATTGGGTAGGATTTCACCCATTCCTAGCTAAGTTCTTAAAATTAAACCCTTTGGTTCGTGTTTAAAAACTTTCAAACATCTGATGGCTTTACAGGGGCTGAATATAAAAGCATTTGTACTTAAAGGTCTTGTGTATTCATTAAGAAATATAGTAATGTCTTTTAATGTTTTAAGAGTTGATCAGGGTTTACTATGATGCAAGTAATAGGATGATTAATAAGGGAAGGTTTTTATGAATTCAAAAGTCAATTATTCAAAAGCAGGGAAAGATTTTGAGAGAGGGAACAAAGTATTCTTAGATTGCGTAGAAGCTGCTAGGTTCCAGTTTTAATTTTTAGGTTTAGTTGGACTCTGTTATGAAAAGATAGGTTATGGGTGGGCGACAGGTTGATACAGTCTTAGAAAAAGCAGGTAATATCAAAGTATTGGAAAGCTAGCATGCATGCCCTCTTACCTGGGTATCTTCCCCCTTTTTTCCTTTTAAACTCTTGAGCCTCCTATAACGAAGGATTATGTGTTTCAAACCTATTTTTTTTTTACTGTTTCATTAAGTGTGCTTGTGCCCAAAATATTTACTTGTATAATATCTGTAACTTGCTTAAATACTTCAGCAAAGTCAGCATatttactcattcaacaaatatttgagccaggcattattttagacacagcagtgaacaaaacaaaaaggcattcttgccttcatggagcttacattctTATTGTTATTTAAATCTAAATGTTATAAAAcaagaatttatattctagggttgatcagctagtatttaatcaaaaaggccacactcccatagcagctactctaagcTGTAGTAGCTAATAAAAAATATTAATGTTggccgggcacagtggctcacgcctataatcccagcactttgggaggccaagggtggtagatcacttgaggtcaagagttgtgacaccagcctggccaacctggtgaaaccctatctctattaaaaaatacaaaaaaatacaaaaaaattagctgggcatgttggcatgcacctgtagtcccagctatttgggaggctgaggcacgagaattgcttgaatccgggaggtggaggttgcagtgagccaagatggggccactgcactctaacgtgggcaacagagaccctgtctcaaaaagaaaaTATTCCTGTTAGCCCTAAAGGCTTTAcatgaggaatggtagaagtggtcttttgtttaaattagttgcattcagcatatatgaattgtcttaaatattttggggatactcccccgccttttaaacagggcataagatctggtaaactctctgtatatcttcctacctttcaaaatcgttcttagggttagtcaagtctggaatataattgctgactataaagttagcaattatgcttttaaggtgttgtcacatcaacctaaagagaaccatctatggaaggtatggttgaaacatctgtaggaacacagaactgggatttcactgagtttaccaaatcaactgtgtgaactgtttctgcactgcttgctaatggtttcatctaataaatgtttacttatatagctgagtttggttttattctaacaaattacctggtggtgtgattgtgaggtgattaacagttctcacATAGTTTACTGTTAGGTCACACACAGACTTCCGATCATAATCCATACTGCCTTTTTGAGCCTAAAATCAGCCTACTACCACAATTACCAAATATTCTGAAAATTTCTAGTATGGTGAAGATGGAGAGATCTTGGtgtgaaggttaattttatatgtcatcttgattatgctaggagatgcccagatttctgggtttgtccatgagggtgtttccagaagagattagcatttgaatcagtagactgaataaaaaagagccacccactccactgcgggtgggccaaccccttgagggcctagctggaataaaaaggcagaggaagggcaaattctgtcttctctctgcttgaacagggacatccatgttctatccttggacattggttctcctgattctctggctttcagacatggaccagggcccctggttctcagacctttgggtttggactggaactacaccattggctttcctgggcttactgtctgcggaaagcagattgtgggacttctcagcctccataatcacaagagccaatccctcataataaatttatttctatata |
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