Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RBM39P1
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr20). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chrX:44029124-44031791  UCSC
Coordinates (T2T) chrX:43435391-43438058  UCSC
Coordinates (hg19) chrX:43888370-43891037  UCSC
Strand +
Parental Sequence NM_184234.3
Parental seq. overlap 2475 bp
Parental seq. overlap (%) 48.9%
Genomic Region Intergenic
Retrocopy Summary RBM39P1, located on chrX:44029124-44031791, is a retrocopy of the parental gene RBM39. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RBM39
Full Name RNA binding motif protein 39
Also known as CAPER|CAPERalpha|FSAP59|HCC1|RNPC2
Coordinate chr20:35701347-35742262
Strand -
Gene summary This gene encodes a member of the U2AF65 family of proteins. The encoded protein is found in the nucleus, where it co-localizes with core spliceosomal proteins. It has been shown to play a role in both steroid hormone receptor-mediated transcription and alternative splicing, and it is also a transcriptional coregulator of the viral oncoprotein v-Rel. Multiple transcript variants have been observed for this gene. A related pseudogene has been identified on chromosome X. [provided by RefSeq, Aug 2011]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes RBM39P1
Bonobo Pan paniscus RBM39P1
Gorilla Gorilla gorilla RBM39P1
Orangutan Pongo abelii RBM39P1
Gibbon Nomascus leucogenys RBM39P1
Green monkey Chlorocebus sabaeus RBM39P1
Crab-eating macaque Macaca fascicularis RBM39P1
Rhesus Macaca mulatta RBM39P1
Baboon Papio anubis RBM39P1
Golden snub-nosed monkey Rhinopithecus roxellana RBM39P1
Marmoset Callithrix jacchus RBM39P2
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RBM39P1
CCGCGTGGGCTTCTCTAATTCCATTGTTGTTTTGAGATTCGCTTGGGCCTAGCTGTCATCGCAGCCCTACATTCGGGCTGGGCGGTCCCGCGGCCTGGGCGTAGGGGCGTAATCTCTTCCCAAACACGAGCACCACAGGCGCCCGAAAGCCGACAGAGGCGTTTAGAGAAAATGGCAGACGATATTAATATTGAAGCAATGCTTGAGGCTCCTTACAAGTAGGATGAGAACAAGTTGAGCAGGGCCAACGGCCATGAAGAACGTAGCAAAAAAAGGAAAAAAAGCAAGAGCAGAAGTCGTAGTCGTGAACGAAAGAGAAGCAAAAGTAAGGAACGGAAGCAAAGTACAGATCGAGAAAGGAAAAAGAGCAAAAGCCGTGAAAGGAAGCGAAGTCGAAGCAGAGAGGCGACGGAGCCGCTCAAGAAGTCGAGATTGAAGATTTAGAGGCCGCTACAGAAGTCCTTACTGCGGACCAAAATTTAACAGTGCCATCTGAGGAAAGACTGGATTGCCTTATAGTATCAAATTAAGCATAGGACGTTCCCGAAGCAAAAGTCCACTCAGAAAAGACAAGAGCCCTGTGAGGGAACCTATTGATAATCTAACTCCTGAGGAAAGAGATGCAAGGACAGTCTTCTGTATGCAGCTGGCGGCAGGAATTCGACCAAAGGATTTGGAAGAGTTTTTCTCTACAGTAGGAAAGGCTCGAGGCGTGAGGATGATTTCCGATAGAAATTCAAGACATTCCAAAGGAATTGCTTACGTGGAGTTCGTGGGTGTTAGTTCAGTGCCTCTAACAATAGGATTAACTGGCCAACGAGTTTTAGGAGTGCCAATCATAGTACAGGCATCACAGGCAGAAAAAAACAGAGCTGCAGCCATGGCAAACAATGTACAAAAGGGAAGTGCTGGACCTAAGAGGCTTTAGGTGGACTCATTACACTTTTAACATAACTGAAGATACGCTTCGTGGGTTCTTTGAGCCTTTCGGAAGGATTGAAAGTATCCAGCTGACGATAGACAGTGAAACTGGTCGATCCAAGGGATATGGATTTATTACATTTTCTGATTCAGAATGTGCCAAAAAGTCTTTGGAACAATTTAATGGATTTGAACTAGCAGGGAGGCCAATGAAAGTTGGTCATGTTATTGAACGTGCTGATGCTTCGAGTACTAGTTCATTTTTGGACAGTGATGAACTGGAAAGGACTAGAATTGATTTGGGAACAACTGGTCGTCTTCAGTTAGTGGCAAGACTTGCAGAGGATACAGGTTTGCAGATTCCACCAGCAGCACAGCAAGCTCTACAAATGAGTGGCTCTTTGGCATTTGGTGCTGTGGCAGAATTTTCTTTTGTTATGGATTTGCAAACAAGACTTTCCCAGCAGACTGAcCACTTGCAACACAGTGTTTCCAACTCTCTAACATGTTTAACCCTCAAACAGAAGAAGTTGGATGGGATACAGAGATTAAGGACGATGTGATTGAGGAATGTAATAAACATGGAGGAATTATTCATATTTATGTTGACAAAAATTCAGCTCAGGGCAATGTCTATGTGAAGTGCTCATCAATTGCTGCAGCTATTGCTGCTGTCAATGCATTGCATGGCAGGTGGTTTGCTGGTAAAATGATAACAGCAGCATATGTACCTCTTCCAACTTACCACAACCTGTTTCCTGATTCTATGACAGCAACACAACTACTGGTTCCAAGTAGACGATGAAGGAAGATATAGTCCCTTATGTATATAGCTTTTCTTCTTTCTTGAGAATTCATCTTGAGTTATCTTTTATTTAGATAAAAATAAAGAGGCAAGGATCTACTGTCATTTGTATACAATTCCCGTTACCTTGAAAAAATAAAAATGTTAACTGGAATGCAGTGTGCTCATTCTCCCTAAAGAGCAAATCTCACTGTATACAAAACTGTTCTCTTGTTCTGCCTTTTAAAATGTTCGTGTAAAAAAATTAATGAACTATAGGAATAGCTCTAGGAGAACAAATGTGCTTTCTGTAAAAAGGCAGACCAGGATGTAATGTTTTTAATGTTTCAGAAGCCTAACTTTTTACACAGCAGTTACATTTCACATTTCACCAATGTTGATATTTGGCTAATGGTTGAGCAGGTTTCTGAAATACACATTTAGTGTATGGGAATACAAGACAGCTAAAGGGCTGTTTGGTTAGCATCTCATCTTGCATTCTGATCAATTGGCAAGAAAGGGGGATTTCAAAATTATAATATTTCTTGATGCTATCTTTTCAATTAATTTATCTGTAAAAGTTTCTTTGTAAATACTATGCGTTCTGGTGTGTCTTAAAATTCCAAACAAAATGATCCCTGCATTTCCTGAAGATGTTCAGTGAGAGTCTGGTAAGCAAAGCAGTCTGAGAAAGAAATAGGAAATGCAGAAATAGGTTTTGTCTGGTTGCATATAATCTTTGCTCTTTTTAAGCTCTGTAAGCTCTGAAGTATATTTTTGGGTTACTTCAGTGTGTTTGACAAGACAGCTTGATATTTCTATCAAATAAATGACTTTCATATTGCAACAATCTTTGTAAGAACCACTCAAATAAAAGTCTCTGAAAAAGGC
>NM_184234.3
atgtgtgctggtgaatgtgagtACAGGGAAGCAGCGGCCGCCATTTCAGGGAGCTTGTCGACGCTGTCGCAGGGGTGGATCCTGAGCTGCCGAAGCCGCCGTCCTGCTCTCCCGCGTGGGCTTCTCTAATTCCATTGTTTTTTTTAGATTCTCTCGGGCCTAGCCGTCCTTGGAACCCGATATTCGGGCTGGGCGGTTCCGCGGCCTGGGCCTAGGGGCTTAAcagtagcaacagaagcggcggcggcggcagcagcagcagcagcagcagcaATCTCTTCCCGAACACGAGCACCACAGGCGCCCGAAGGCCGGAACAGGCGTTTAGAGAAAATGGCAGACGATATTGATATTGAAGCAATGCTTGAGGCTCCTTACAAGAAGGATGAGAACAAGTTGAGCAGTGCCAACGGCCATGAAGAACGTAGCAAAAAGAGGAAAAAAAGCAAGAGCAGAAGTCGTAGTCATGAACGAAAGAGAAGCAAAAGTAAGGAACGGAAGCGAAGTAGAGACAGAGAAAGGAAAAAGAGCAAAAGCCGTGAAAGAAAGCGAAGTAGAAGCAAAGAGAGGCGACGGAGCCGCTCAAGAAGTCGAGATCGAAGATTTAGAGGCCGCTACAGAAGTCCTTACTCCGGACCAAAATTTAACAGTGCCATCCGAGGAAAGATTGGGTTGCCTCATAGCATCAAATTAAGCAGACGACGTTCCCGAAGCAAAAGTCCATTCAGAAAAGACAAGAGCCCTGTGAGAGAACCTATTGATAATTTAACTCCTGAGGAAAGAGATGCAAGGACAGTCTTCTGTATGCAGCTGGCGGCAAGAATTCGACCAAGGGATTTGGAAGAGTTTTTCTCTACAGTAGGAAAGGTTCGAGATGTGAGGATGATTTCTGACAGAAATTCAAGACGTTCCAAAGGAATTGCTTATGTGGAGTTCGTCGATGTTAGCTCAGTGCCTCTAGCAATAGGATTAACTGGCCAACGAGTTTTAGGCGTGCCAATCATAGTACAGGCATCACAGGCAGAAAAAAACAGAGCTGCAGCAATGGCAAACAATTTACAAAAGGGAAGTGCTGGACCTATGAGGCTTTATGTGGGCTCATTACACTTCAACATAACTGAAGATATGCTTCGTGGGATCTTTGAGCCTTTTGGAAGAATTGAAAGTATCCAGCTGATGATGGACAGTGAAACTGGTCGATCCAAGGGATATGGATTTATTACATTTTCTGACTCAGAATGTGCCAAAAAGGCTTTGGAACAACTTAATGGATTTGAACTAGCAGGAAGACCAATGAAAGTTGGTCATGTTACTGAACGTACTGATGCTTCGAGTGCTAGTTCATTTTTGGACAGTGATGAACTGGAAAGGACTGGAATTGATTTGGGAACAACTGGTCGTCTTCAGTTAATGGCAAGACTTGCAGAGGGTACAGGTTTGCAGATTCCGCCAGCAGCACAGCAAGCTCTACAGATGAGTGGCTCTTTGGCATTTGGTGCTGTGGCAGAATTCTCTTTTGTTATAGATTTGCAAACAAGACTTTCCCAGCAGACTGAAGCTTCAGCTTTAGCTGCAGCTGCCTCTGTTCAGCCACTTGCAACACAATGTTTCCAACTCTCTAACATGTTTAACCCTCAAACAGAAGAAGAAGTTGGATGGGATACCGAGATTAAGGATGATGTGATTGAAGAATGTAATAAACATGGAGGAGTTATTCATATTTATGTTGACAAAAATTCAGCTCAGGGCAATGTGTATGTGAAGTGCCCATCAATTGCTGCAGCTATTGCTGCTGTCAATGCATTGCATGGCAGGTGGTTTGCTGGTAAAATGATAACAGCAGCATATGTACCTCTTCCAACTTACCACAACCTGTTTCCTGATTCTATGACAGCAACACAGCTACTGGTTCCAAGTAGACGATGAAGGAAGATATAGTCCCTTATGTATATAGCTTTTTTTCTTTCTTGAGAATTCATCTTGAGTTATCTTTTATTTAGATAAAAATAAAGAGGCAAGGATCTACTGTCATTTGTATGCAATTTCCTGTTACCTTGAAAAAATAAAAATGTTAACAGGAATGCAGTGTGCTCATTCTCCCTAAATAGTAAATCCCACTGTATACAAAACTGTTCTCTTGTTCTGCCTTTTAAAATGTTCATGTAGAAAATTAATGAACTATAGGAATAGCTCTAGGAGAACAAATGTGCTTTCTGTAAAAAGGCAGACCAGGGATGTAATGTTTTTAATGTTTCAGAAGCCTAACTTTTTACACAGTGGTTACATTTCACATTTCACTAATGTTGATATTTGGCTGATGGTTGAGCAGTTTCTGAAATACACATTTAGTGTATGGAAATACAAGACAGCTAAAGGGCTGTTTGGTTAGCATCTCATCTTGCATTCTGATCAATTGGCAAGAAAGGGAGATTTCAAAATTATATTTCTTGATGGTATCTTTTCAATTAATGTATCTGTAAAAGTTTCTTTGTAAATACTATGTGTTCTGGTGTGTCTTAAAATTCCAAACAAAATGATCCCTGCATTTCCTGAAGATGTTTAAACGTGAGAGTCTGGTAGGCAAAGCAGTCTGAGAAAGAAATAGGAAATGCAGAAATAGGTTTTGTCTGGTTGCATATAATCTTTGCTCTTTTTAAGCTCTGTGAGCTCTGAAATATATTTTTGGGTTACTTCAGTGTGTTTGACAAGACAGCTTGATATTTCTATCAAACAAATGACTTTCATATTGCAACAATCTTTGTAAGAACCACTCAAATAAAAGTCTCTTAAAAAGGCCACAGGAGATCTTCATTTTTCAAATGTTTTAAAGTTACAGAAATTTGAGAACAGAATTAGCTTCTTTTAGTCTCAATTCAGTACTTGCCTCTTGGGAAAATGTTCCGAGTCTGCGGAAACTTGCCCTCACGTTGTCCCCCATGAATTCCTTTATTCTATTAGAGTCTAGCCCTGTGTATTTTAGAAGAATGTATCAAAACTGAGGGGTTTACCAAAAAGAAAAGGAAACAGCCTGGCCTTAAAACCTGGGCATTCTTGGTCTCCTGCATTGTCTGGGCATATTTATGAAGAAATTTTCACCATTTACAATACATACTTAACAAAATGGCTTAACTTCAAACTGGTTTCCAAAATTGATTTATATATTAATATATTAAATAAGGTGCATATATTACTGTATTAAGGGGTTTTGAGCTTTCATACTAGTTGGGAAGCAAGCTGTCACCATTTATACTCAATTCTCTTCAACTGTTTATCTCTTGGTAAATCTTTTGAGTAGGAAATGCTGCTCCTAGCTTATCTTCAAATACTGAGTTCCTTACCTCATTTGTTCAACTTTTTTTTTTGTTAGCATTGAAGCACAAGTTTTACAGGCTTATTCAGAATTTCATATCAGTCGTTTTGTTTGACATTTATCCCAATAATTGTTCTAGTGATTTAATTTGTATGGAAACTCCCAAGGTTCAAtttctttttctttttgagatggagtcttgctctttggcccaggctggagtgcagtgatgtgatctcagctccatctcccaggttcaagcaattctcccacctcagtctcctgaagagctgggacaggtgcgcaccaccgtgcccagctaatttttgtatttttagcagagacggtgttagcccggctggtctcacactgacctcaagtgatctgtccgccttggcctcccaaagtgccgggattacaggcatgagccaccgcgcccagccTCATTGAAAATTTACTTTTCAATACCAGACTGCAGAGTTCTTTGGGGCAGAGACACTCTGTCAGTGTGCTCTTTTTCCAAAGTATCTCCTGCTATCAGTTTTTCCCCTTGAACCAAGTCTTCCTAACAAATTTGTTGTGTCATTGCTTTCTAGGGAACTGGACCAGCAAATGTGGCCTTTAGTGGTTAATCTCATCTGTGCCAAAATTTAGTTGCTACCAGAGTGAAATTTGGTGTGTAAATAATGTTCAGAGGAAATGTGGTTGGAGTGTAGTAACTTGAATAGTGTCGTGCATAGAAAACAGCTCATTCTGAGTGAAACTGTTTATGTCCAATCAGTTCCTGAGTCAGCATCCCACTGGTTCGAAAATCTGTAACTAATCTGGTAATGTCCTTAATTTCCTCCTGCCTGTCAGTGTTCCAAAGTGTTCATCTAGTTTTCTTTTATCTTTATAATAATTACTACCATCTTTGAAAGTTCTGTTTAAGAAATGCTTAATGGGCAATGCGGGTTAGTAACTCCAGGGTCTGCGTGGCCTGGGCAGGTGAGATGGACAACTGCCTCATTACAGAAGCTTTTTATCATCAAACTAGTAAGTTTTGTGGAGGGCAAGCTATATAGATTGTTGATGAGTGGTTAGAAAATCATCTGGAATTTAGCCAGTTGAGAAGCTACAGAAGTTTCTATTTTTTTTTACAGTGGATGAACTGTTTTGCTTTTTCTGATAAAGCCACTAGGTATATCTAAATAACAACCTCGggctggacgtggtgccttatgcctgtatatgtgaacactgggaggcggaggcgggtggatcatgaggtcaagagtttgagaccagcctggccaacacagtgaaaccccgtctctactaagaatacaaattttttttgttttgagacagagtctcgctctgtcgcccaggctggagtgcaatggctcgatctcagctcactgcaacctccaccttctgggttcaagcgattctcctgcctcagcctcccgagtagctgggaatacaggcgcgtgtcaacacacccggcttaagtttttgtatttttagtagagacggggtgtcaccgtgttacccaagatggtctccatctcctgaccttgtgatccaccagcctttgcctcccaaagtgctgggattacaggcataagccaccgcgcccagcctaacaatacaaaatttagctaggcatggtggcacgtgcctgttatcacagctactcgggaggctgaggcaggagaaacgcttgaacacaggaggcagaagttgcggtaagccgagatcgtgccac

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