Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name NLGN2P1
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr17). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chrX:71167170-71167550  UCSC
Coordinates (T2T) chrX:69601248-69601628  UCSC
Coordinates (hg19) chrX:70387020-70387400  UCSC
Strand +
Parental Sequence NM_020795.4_2
Parental seq. overlap 301 bp
Parental seq. overlap (%) 6%
Genomic Region Intragenic (NLGN3)
Retrocopy Summary NLGN2P1, located on chrX:71167170-71167550, is a retrocopy of the parental gene NLGN2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name NLGN2
Full Name neuroligin 2
Also known as -
Coordinate chr17:7405492-7419860
Strand +
Gene summary This gene encodes a member of a family of neuronal cell surface proteins. Members of this family may act as splice site-specific ligands for beta-neurexins and may be involved in the formation and remodeling of central nervous system synapses. [provided by RefSeq, Jul 2008]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes NLGN2P1
Bonobo Pan paniscus NLGN2P1
Gorilla Gorilla gorilla NLGN2P1
Orangutan Pongo abelii NLGN2P1
Gibbon Nomascus leucogenys NLGN2P1
Green monkey Chlorocebus sabaeus NLGN2P1
Rhesus Macaca mulatta NLGN2P1
Rat Rattus norvegicus Nlgn2P1
Dog Canis familiaris NLGN2P1
Panda Ailuropoda melanoleuca NLGN2P1
Greater mouse-eared bat Myotis myotis NLGN2P1
Greater horseshoe bat Rhinolophus ferrumequinum NLGN2P1
Egyptian rousette Rousettus aegyptiacus NLGN2P1
Sloth Choloepus didactylus NLGN2P1
Opossum Monodelphis domestica NLGN2P1
Crab-eating macaque Macaca fascicularis Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>NLGN2P1
AGGAGCTGGTAGAGCAGGACATCCAGCCAGCCCGCTACCACGTGGCCTTTGGCCCTGTGATTGATGGTGATGTCATTCCTGATGACCCTGAGATCCTCATGGAGCAGGGCGAGTTCCTCAACTATGACATCATGCTAGGTGTCAACCAGGGCGAGGGTCTCAAGTTTGTGGAAGGGGTGGTGGACCCTGAGGATGGTGTCTCTGGCACTGACTTTGACTATTCCGTCTCCAATTTTGTGGACAATCTGTATGGCTATCCTGAGGGTAAGGACACCCTGCGAGAGACCATCAAGTTCATGTATACAGACTGGGCAGACCGTGACAACCCTGAGACCCGCCGTAAAACACTGGTGGCACTCTTCACTGACCACCAGTGGGTGG
>NM_020795.4_2
GCAACTTGGTCTGAATTCCAGGTCACTAACCACTTGTCTCTTCTGTTTCCCCATTCCTTTCTGTCTGCCCCATCCAATTTCCCTTGCCCTCTTCCACCTCTGTATTTTtctgtctgtccgtctgtctgtATCCTGCCTCCCTGCCCCTCTCGCTCCACCCCCCGCAGGTCGGGCCTGccttcaccttctcccatttccttccccttccccaccccgtgccccctccATGGAGAGGAACAGACCCCTTCTCTGTCCAGTCTAACCCAGGtccctccccaaccccctcctccctcctttccccccgcccctcctccctcctGGGGCGAGGGGGGCctccctccctctcccccccttctctctctctcCGAGGGGGGGGGGTCCCAGGGAGGGAGGGGGGGTCCCCCGATCAGCATGTGGCTCCTGGCGCTGTGTCTGGTGGGGCTGGCGGGGGCTCAACGCGGGGGAGGGGGTCCCGGCGGCGGCGCCCCGGGCGGCCCCGGCCTGGGCCTCGGCAGCCTCGGCGAGGAGCGCTTCCCGGTGGTGAACACGGCCTACGGGCGAGTGCGCGGTGTGCGGCGCGAGCTCAACAACGAGATCCTGGGCCCCGTCGTGCAGTTCTTGGGCGTgccctacgccacgccgcccctgggcgcccgccgcttccagccgcctgaggcgcccgcctcgtggcccggcgtgcgcaacgccaccaccctgccgcccgcctgcccgcAGAACCTGCACGGGGCGCTGCCCGCCATCATGCTGCCTGTGTGGTTCACCGACAACTTGGAGGCGGCCGCCACCTACGTGCAGAACCAGAGCGAGGACTGCCTGTACCTCAACCTCTACGTGCCCACCGAGGACGGTCCGCTCACAAAAAAACGTGACGAGGCGACGCTCAATCCGCCAGACACAGATATCCGTGACCCTGGGAAGAAGCCTGTGATGCTGTTTCTCCATGGCGGCTCCTACATGGAGGGGACCGGAAACATGTTCGATGGCTCAGTCCTGGCTGCCTATGGCAACGTCATTGTAGCCACGCTCAACTACCGTCTTGGGGTGCTCGGTTTTCTCAGCACCGGGGACCAGGCTGCAAAAGGCAACTATGGGCTCCTGGACCAGATCCAGGCCCTGCGCTGGCTCAGTGAAAACATCGCCCACTTTGGGGGCGACCCCGAGCGTATCACCATCTTTGGTTCCGGGGCAGGGGCCTCCTGCGTCAACCTTCTGATCCTCTCCCACCATTCAGAAGGGCTGTTCCAGAAGGCCATCGCCCAGAGTGGCACCGCCATTTCCAGCTGGTCTGTCAACTACCAGCCGCTCAAGTACACGCGGCTGCTGGCAGCCAAGGTGGGCTGTGACCGAGAGGACAGCGCTGAAGCTGTGGAGTGTCTGCGCCGGAAGCCCTCCCGGGAGCTGGTGGACCAGGACGTGCAGCCTGCCCGCTACCACATCGCCTTTGGGCCCGTGGTGGATGGCGACGTGGTCCCCGATGACCCTGAGATCCTCATGCAGCAGGGAGAATTCCTCAACTACGACATGCTCATCGGCGTCAACCAGGGAGAGGGCCTCAAGTTCGTGGAGGACTCTGCAGAGAGCGAGGACGGTGTGTCTGCCAGCGCCTTTGACTTCACTGTCTCCAACTTTGTGGACAACCTGTATGGCTACCCGGAAGGCAAGGATGTGCTTCGGGAGACCATCAAGTTTATGTACACAGACTGGGCCGACCGGGACAATGGCGAAATGCGCCGCAAAACCCTGCTGGCGCTCTTTACTGACCACCAATGGGTGGCACCAGCTGTGGCCACTGCCAAGCTGCACGCCGACTACCAGTCTCCCGTCTACTTTTACACCTTCTACCACCACTGCCAGGCGGAGGGCCGGCCTGAGTGGGCAGATGCGGCGCACGGGGATGAACTGCCCTATGTCTTTGGCGTGCCCATGGTGGGTGCCACCGACCTCTTCCCCTGTAACTTCTCCAAGAATGACGTCATGCTCAGTGCCGTGGTCATGACCTACTGGACCAACTTCGCCAAGACTGGGGACCCCAACCAGCCGGTGCCGCAGGATACCAAGTTCATCCACACCAAGCCCAATCGCTTCGAGGAGGTGGTGTGGAGCAAATTCAACAGCAAGGAGAAGCAGTATCTGCACATAGGCCTGAAGCCACGCGTGCGTGACAACTACCGCGCCAACAAGGTGGCCTTCTGGCTGGAGCTCGTGCCCCACCTGCACAACCTGCACACGGAGCTCTTCACCACCACCACGCGCCTGCCTCCCTACGCCACGCGCTGGCCGCCTCGTCCCCCCGCTGGCGCCCCGGGCACACGCCGGCCCCCGCCGCCTGCCACCCTGCCTCCCGAGCCCGAGCCCGAGCCCGGCCCAAGGGCCTATGACCGCTTCCCCGGGGACTCACGGGACTACTCCACGGAGCTGAGCGTCACCGTGGCCGTGGGTGCCTCCCTCCTCTTCCTCAACATCCTGGCCTTTGCTGCCCTCTACTACAAGCGGGACCGGCGGCAGGAGCTGCGGTGCAGGCGGCTTAGCCCACCTGGCGGCTCAGGCTCTGGCGTGCCTGGTGGGGGCCCCCTGCTCCCCGCCGCGGGCCGTGAGCTGCCACCAGAGGAGGAGCTGGTGTCACTGCAGCTGAAGCGGGGTGGTGGCGTCGGGGCGGACCCTGCCGAGGCTCTGCGCCCTGCCTGCCCGCCCGACTACACCCTGGCCCTGCGCCGGGCACCGGACGATGTGCCTCTCTTGGCCCCCGGGGCCCTGACCCTGCTGCCCAGTGGCCTGGGGccaccgccacccccaccgcccccctcccttcatcccttcgggcccttccccccgccccctcccaccgccaccagccacaacaacacgctaccccacccccactccaccACTCGGGTATAGGGGGTGGGTGGGGAGGCCCTCCTCCCCGGCCCTCCCTGGCCCGGCCACTCCGAAGGCAGGGAGGAGGACTTGGCAACTGGCTTTTCTCCTGTGGAGTCGTCACACGCCATCCAGCAGCGCTAAGGTGGACATGGGATTCCTCCCTGCGATGCGTGTCTTTCCCACGCAGAGAAGCCCAGTCTCTTCTCTGGATCTGGGCCTTTGAACAACTGGGGGGCGTTTTCTCCCCCCCATTGGGACACCAGTCTTCGGTGTGTGGAATGTGGTATTTTCCCGCGTGGAGGTGTGCTTTCTCACAACGGGGTGTGTTTTCCCATGTGCAGGGTGAGGTTTTTTTTTGCCACCCTGGACACATGTTGGCCCCCTCAAAGAATTTCTGTGGGGATTTGTACCCCAGAATCCTGTtcccccatcccttctcccacctcctcccctctccctccccctGGAGACCCTGGAAGTGGTGTGTTCACATACAGTGACCCTTGGCCACCAGACCACAGAGGATGGAGCCTGGGAAGCAGCGAGGAAATCACAGCCCCCTCGCCCCTGCCTCCCTTGCCCCTACCCCGGCGAAGCATGTTCCCCCCGACGCCCCCCTTGGCACAAGTCAGATGAAGCACGTTCTGCCGGGGAGGCCCTCACCTTCCAGAGAGGACAGACACAGATTTCCTGCTGGGGGAGGGAGGAGTCCACGCATCCTGATGCTGCCTGGAAGCTTATTTTCCCGTGGCCAGGACGCATTTCTCTGAGTGGAAACAGGTTCTTGCATGTGGATGTGTGTTTCCCCAGGCAGACGGCCCCTCTCTTCCCAGCACTTCCCTGCCTCCCCCAGGCCTCAGGCCCAGCACCCAGTTCCTCCTCACATGGCAGGTGAGCACAGACTTCTAGTTGGCAGGAGCTGAGGAGGGTGAACAAACCCCGAGGGAGGCCCGGCCCTTGCTCCCGAGTTGGGGGGAGGGGGTGTGGCAACGTGCCCCCCGCAGAGGCCACGCATGTTTGACCAAAGCCCTCATTGTGGTCCGAGGACAGCCTTTTCCCCAGGCCTCAGAGCATTGCTCATCCGTGCCAAACTGGGTAGGTGGATTTGAGCGGAAAGACTCCCAAAATGTGCCAAGAATTTCCCAGTCCCAGGCAGGGCAGGGGAAACTAAGGGCAAGCAGGATACAGGGCGAGGGATGTGGCAGGTGAGGGGGCTCCCGCCTGTGCCCCTTCTCCTCACCATGTCTCCCCCACCCTGCCTCAGTTCTCCGTTCCCCTTCATCTCCGTCCCCCTCTTTGAAGCTGTCCCCATCTCAGTGTCAGACCAGCCTTCTCCTCAGCTGACCACCCTCCTCTGACCCACGCCCCCTCCTTGTCTGAAAGAAAGGAGCCTTGAATGGTGGAGGGAGGCAGTGGGGAGAAAGGTCTCACCGGACAGGTTGGGAGAATGAGGTCAGCGGTGCTGGGGAACAGATGGAGGGGGCAGTGGGGACAGGGCTTGGGCAGACACCAGCAGGAATAATTTGAAATGTGTGAGGTGACTCCCCGGAGGGCCTTGGGCTTGGGCATTTGGGAAAAGAATGATGTCTGGAAGGGCTTAAGGGACACAGTGGACGAGGGGAGAGTCCTCATCTGCTGGCATTTTGTGGGGTGTTAGTGCCAAACTTGAATAGGGGCTGGGGTGCTGTCTTCCACTGACACCCAAATCCAGAATCCCTGGTCTTGAGTCCCCAGAACTTTGCCTCTTGACTGTCCCTTCTCTTCCTACCTCCATCCATGGAAAATTAGTTATTTTCTGATCCTTTCCCCTGCCTGGTCTAGCTCCTCTCCAAACAGCCATGCCCTCCAAATGCTAGAGACCTGGGCCCTGAACCCTGTAGACAGATGCCCTCAGAATTGGGGCATGGGAGGGGGGCTGGGGGACCCCATGATTCAGCCACGGACTCCAATGCCCAGCTCCTCTCCCCAAAACAATCCCGACAATCCCTTATCCCTACCCCAACCCTTTGCGGCTCTGTACACATTTTTAAACCTGGCAAAAGATGAAGAGAATATTGTAAATATAAAAGTTTAACTGTT

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